Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Reverse (-)

30299885 .. 30302510

Gene Structure 2626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1208300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCGGTCGGACTCTTCGCCGCCACAACCCCCACCCCCTTCCGCCTAATCCAGTCCTCCTACGTCATTCCAAAACCCAACCCCGCCACCGTCTTCTTCCCAAATCTCCGCCACCAGAAGTCGGCACTCCACAGGACTCGCCGGAAACTCTGTTTCACCGTCTATGTAGTGATGGAGGGCCAAAAACAGGTAACCCACCTCGACAATTCCGCCGGAAAAGCCCCGGAAGCCGATGATTCTCAGATCCCAATCGTAATTCCGTCGGTTCGCGTGGCGGAGAGGCTGTCGAGGAAGAAGTCGGAGAGGTTCACTTACCTTGTCGCTGCCGTGATGTCCAGCTTTGGGATTACTTCCATGGCTGTCATGGCTGTTTACTACAGATTTTACTGGCAAATGGAGGGTGGGAATGTGCCTATGTCTGAAATGCTGGGTACATTTGCTCTATCTGTTGGTGCTGCTGTGGGAATGGAGTTTTGGGCAAGATGGGCACATAAAGCTCTCTGGCACGCTTCCTTATGGCATATGCACGAGTCGCACCACCGGCCTAGAGAAGGTCCGTTCGAGCTCAACGATGTGTTTGCGATAATCAACGCGGTTCCGGCAATCGCCCTCCTTAATTACGGTTTCTTCCACAAAGGCCTGGTTCCTGGTCTTTGTTTTGGTGCTGGCCTTGGAATTACGGTGTTCGGCATGGCGTATATGTTTGTCCACGATGGTCTCGTGCATAAAAGATTCCCAGTGGGGCCCATAGCCAACGTGCCCTATTTGAGAAAGGTTGCTGCAGCTCATCAGCTCCACCACTCAGAGAAATTCGAGGGTGTCCCATATGGGTTGTTTCTTGGACCTAAGGAACTCGAAGAAGTGGGAGGACTAGATGAGTTGGACAAGGAGATCAATAGAAGAATCAAAGCATACAATACAAGGGCTTCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

312

Amino Acids

34.78

Weight (kDa)

9.52

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	152 - 280	2.9e-14	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	270, 593
AciI	CCGC	8 cut(s)	5, 21, 43, 84, 109, 210, 275, 593
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	809
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	4 cut(s)	121, 187, 342, 551
AjnI	CCWGG	2 cut(s)	639, 646
AjuI	GAANNNNNNNTTGG	2 cut(s)	457, 489
AluBI	AGCT	5 cut(s)	339, 497, 565, 785, 793
AluI	AGCT	5 cut(s)	339, 497, 565, 785, 793
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	5 cut(s)	178, 542, 637, 667, 743
ApaI	GGGCCC	1 cut(s)	747
ApeKI	GCWGC	4 cut(s)	323, 455, 779, 782
ApoI	RAATTY	1 cut(s)	809
AspS9I	GGNCC	5 cut(s)	178, 554, 743, 744, 842
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	554, 842
AxyI	CCTNAGG	1 cut(s)	846
BaeGI	GKGCMC	3 cut(s)	490, 747, 762
BanII	GRGCYC	2 cut(s)	567, 747
BauI	CACGAG	2 cut(s)	527, 719
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	310, 442, 766, 794
BccI	CCATC	3 cut(s)	166, 477, 707
BceAI	ACGGC	1 cut(s)	311
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	2 cut(s)	641, 648
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	722
BfaI	CTAG	3 cut(s)	546, 872, 934
BfmI	CTRYAG	2 cut(s)	376, 780
BisI	GCNGC	5 cut(s)	21, 324, 456, 780, 783
BlsI	GCNGC	5 cut(s)	22, 325, 457, 781, 784
Bme1390I	CCNGG	3 cut(s)	224, 641, 648
Bme18I	GGWCC	2 cut(s)	554, 842
BmgT120I	GGNCC	5 cut(s)	178, 554, 743, 744, 842
BmiI	GGNNCC	4 cut(s)	597, 645, 744, 745
BmrFI	CCNGG	3 cut(s)	224, 641, 648
BmrI	ACTGGG	1 cut(s)	731
BmuI	ACTGGG	1 cut(s)	731
BpiI	GAAGAC	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	222, 354, 670
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 187, 342, 551
Bse118I	RCCGGY	1 cut(s)	540
Bse1I	ACTGG	3 cut(s)	52, 392, 737
Bse21I	CCTNAGG	1 cut(s)	846
Bse8I	GATNNNNATC	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	641, 648
BseDI	CCNNGG	3 cut(s)	222, 354, 670
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	4 cut(s)	121, 187, 342, 551
BseMII	CTCAG	2 cut(s)	254, 816
BseNI	ACTGG	3 cut(s)	52, 392, 737
BseSI	GKGCMC	3 cut(s)	490, 747, 762
BseXI	GCAGC	4 cut(s)	310, 442, 766, 794
BseYI	CCCAGC	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	270, 593
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	5 cut(s)	180, 544, 639, 669, 745
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	5 cut(s)	142, 213, 224, 541, 599
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	4 cut(s)	121, 187, 342, 551
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	5 cut(s)	180, 544, 639, 669, 745
Bso31I	GGTCTC	1 cut(s)	722
Bsp120I	GGGCCC	1 cut(s)	743
Bsp1286I	GDGCHC	4 cut(s)	490, 567, 747, 762
Bsp143I	GATC	2 cut(s)	243, 891
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	8 cut(s)	5, 21, 43, 84, 109, 210, 275, 593
BspANI	GGCC	5 cut(s)	180, 544, 639, 669, 745
BspCNI	CTCAG	2 cut(s)	253, 815
BspFNI	CGCG	2 cut(s)	270, 593
BspLI	GGNNCC	4 cut(s)	597, 645, 744, 745
BspMAI	CTGCAG	1 cut(s)	784
BspPI	GGATC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	540
BsrI	ACTGG	3 cut(s)	52, 392, 737
BssAI	RCCGGY	1 cut(s)	540
BssECI	CCNNGG	3 cut(s)	222, 354, 670
BssMI	GATC	2 cut(s)	243, 891
BssSI	CACGAG	2 cut(s)	527, 719
BssT1I	CCWWGG	2 cut(s)	354, 670
Bst2BI	CACGAG	2 cut(s)	527, 719
Bst2UI	CCWGG	2 cut(s)	641, 648
Bst4CI	ACNGT	4 cut(s)	91, 160, 623, 682
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	507, 667
BstDEI	CTNAG	3 cut(s)	240, 802, 846
BstDSI	CCRYGG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	190
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstFNI	CGCG	2 cut(s)	270, 593
BstKTI	GATC	2 cut(s)	246, 894
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	2 cut(s)	243, 891
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	218, 227, 365, 485, 494, 532, 541, 599
BstNI	CCWGG	2 cut(s)	641, 648
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	222, 639, 646
BstSFI	CTRYAG	2 cut(s)	376, 780
BstSLI	GKGCMC	3 cut(s)	490, 747, 762
BstUI	CGCG	2 cut(s)	270, 593
BstV1I	GCAGC	4 cut(s)	310, 442, 766, 794
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	5 cut(s)	180, 544, 639, 669, 745
BtgI	CCRYGG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	744
Cac8I	GCNNGC	2 cut(s)	507, 667
Cfr10I	RCCGGY	1 cut(s)	540
Cfr13I	GGNCC	5 cut(s)	178, 554, 743, 744, 842
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	3 cut(s)	355, 364, 691
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	3 cut(s)	240, 802, 846
DpnI	GATC	2 cut(s)	245, 893
DpnII	GATC	2 cut(s)	243, 891
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	4 cut(s)	32, 98, 199, 290
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	354, 670
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	2 cut(s)	567, 747
Eco31I	GGTCTC	1 cut(s)	722
Eco47I	GGWCC	2 cut(s)	554, 842
Eco53kI	GAGCTC	1 cut(s)	565
Eco81I	CCTNAGG	1 cut(s)	846
Eco91I	GGTNACC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	743
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	639, 646
EcoT14I	CCWWGG	2 cut(s)	354, 670
EcoT38I	GRGCYC	2 cut(s)	567, 747
ErhI	CCWWGG	2 cut(s)	354, 670
FaeI	CATG	3 cut(s)	358, 367, 694
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	3 cut(s)	354, 363, 690
FauI	CCCGC	1 cut(s)	91
FauNDI	CATATG	2 cut(s)	522, 826
Fnu4HI	GCNGC	5 cut(s)	21, 324, 456, 780, 783
FriOI	GRGCYC	2 cut(s)	567, 747
Fsp4HI	GCNGC	5 cut(s)	21, 324, 456, 780, 783
FspBI	CTAG	3 cut(s)	546, 872, 934
GluI	GCNGC	5 cut(s)	21, 324, 456, 780, 783
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	5 cut(s)	180, 544, 639, 669, 745
HapII	CCGG	5 cut(s)	142, 213, 224, 541, 599
Hin1II	CATG	3 cut(s)	358, 367, 694
HinfI	GANTC	6 cut(s)	12, 136, 236, 530, 732, 903
HpaII	CCGG	5 cut(s)	142, 213, 224, 541, 599
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	3 cut(s)	309, 373, 709
Hpy188I	TCNGA	5 cut(s)	11, 243, 301, 421, 805
Hpy8I	GTNNAC	3 cut(s)	309, 373, 709
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	49, 545
HpyCH4III	ACNGT	4 cut(s)	91, 160, 623, 682
HpyCH4IV	ACGT	2 cut(s)	63, 756
HpyCH4V	TGCA	3 cut(s)	526, 724, 782
HpyF10VI	GCNNNNNNNGC	8 cut(s)	218, 227, 365, 485, 494, 532, 541, 599
HpyF3I	CTNAG	3 cut(s)	240, 802, 846
HpySE526I	ACGT	2 cut(s)	63, 756
Hsp92II	CATG	3 cut(s)	358, 367, 694
Kzo9I	GATC	2 cut(s)	243, 891
LmnI	GCTCC	1 cut(s)	798
Lsp1109I	GCAGC	4 cut(s)	310, 442, 766, 794
MaeI	CTAG	3 cut(s)	546, 872, 934
MaeII	ACGT	2 cut(s)	63, 756
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	245, 893
MboI	GATC	2 cut(s)	243, 891
MboII	GAAGA	7 cut(s)	7, 85, 88, 304, 619, 869, 912
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	4 cut(s)	490, 567, 747, 762
MluCI	AATT	5 cut(s)	205, 255, 616, 675, 809
MlyI	GAGTC	3 cut(s)	6, 130, 539
MmeI	TCCRAC	2 cut(s)	279, 861
MseI	TTAA	1 cut(s)	615
MspI	CCGG	5 cut(s)	142, 213, 224, 541, 599
MspR9I	CCNGG	3 cut(s)	224, 641, 648
MvaI	CCWGG	2 cut(s)	641, 648
MvnI	CGCG	2 cut(s)	270, 593
MwoI	GCNNNNNNNGC	8 cut(s)	218, 227, 365, 485, 494, 532, 541, 599
NciI	CCSGG	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	354
NdeI	CATATG	2 cut(s)	522, 826
NdeII	GATC	2 cut(s)	243, 891
NlaIII	CATG	3 cut(s)	358, 367, 694
NlaIV	GGNNCC	4 cut(s)	597, 645, 744, 745
PceI	AGGCCT	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	2 cut(s)	567, 717
PfeI	GAWTC	3 cut(s)	236, 732, 903
PkrI	GCNGC	5 cut(s)	22, 325, 457, 781, 784
PleI	GAGTC	3 cut(s)	6, 130, 538
PpsI	GAGTC	3 cut(s)	6, 130, 538
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	639, 646
PspEI	GGTNACC	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	2 cut(s)	639, 646
PspN4I	GGNNCC	4 cut(s)	597, 645, 744, 745
PspOMI	GGGCCC	1 cut(s)	743
PspPI	GGNCC	5 cut(s)	178, 554, 743, 744, 842
PstI	CTGCAG	1 cut(s)	784
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	5 cut(s)	21, 324, 456, 780, 783
Sau3AI	GATC	2 cut(s)	243, 891
Sau96I	GGNCC	5 cut(s)	178, 554, 743, 744, 842
SchI	GAGTC	3 cut(s)	6, 130, 539
ScrFI	CCNGG	3 cut(s)	224, 641, 648
SduI	GDGCHC	4 cut(s)	490, 567, 747, 762
SfcI	CTRYAG	2 cut(s)	376, 780
SinI	GGWCC	2 cut(s)	554, 842
Sse9I	AATT	5 cut(s)	205, 255, 616, 675, 809
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	8 cut(s)	5, 21, 43, 84, 109, 210, 275, 593
SspMI	CTAG	3 cut(s)	546, 872, 934
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	3 cut(s)	222, 639, 646
StyI	CCWWGG	2 cut(s)	354, 670
TaaI	ACNGT	4 cut(s)	91, 160, 623, 682
TaiI	ACGT	2 cut(s)	66, 759
TaqI	TCGA	5 cut(s)	201, 287, 561, 813, 855
TasI	AATT	5 cut(s)	205, 255, 616, 675, 809
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	3 cut(s)	236, 732, 903
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	744
TseI	GCWGC	4 cut(s)	323, 455, 779, 782
TspGWI	ACGGA	2 cut(s)	249, 546
TspRI	CASTG	1 cut(s)	744
VpaK11BI	GGWCC	2 cut(s)	554, 842
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	1 cut(s)	809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XspI	CTAG	3 cut(s)	546, 872, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.