Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Reverse (-)

13766699 .. 13769961

Gene Structure 3263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27585.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAACCACCTCGTTCGTAAAAGCTCCGTCGGTTACTCCGCCTTGAGGTCCGTTTCGTACCTCCGTCAATCTGCCGTTACCTCTCCACCTCCGATTTTCTCCGCCGCCGCTTCAACCGTTCGCCAGTTCACTTCCGCCGGCTATCCTTCCAACAGTTTTCAATTGACGCCGCCGACGAATTGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTTTGTGATTGAGCGATTCGGTAAATACGCTACGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGTTCGTGGATCGTATTGCTTATGTTCATTCTCTCAAGGAAGAAGCTATCCCGATTCCGAATCAGACTGCGATTACTAAAGACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTAAGTTAGCTTCTTATGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGCTGGCTCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACTCTTGATAAGACCTTTGAGGAACGAGACACTCTCAACGAGAAGATAGTGGAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCTTCAGTGCCTTCGTTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGCGAGCTGCTATGGAAATGCAAGCTGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGAAAGGCAATCCCATATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCATCTGAAGCAGCAAAGATGGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAGCTAGAGCACAAGCAACTGCGAAAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAGAGGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACATTGCCAAGGAGGGTACGATAATGTTGCTTCCAAGTGGTGCTTCAAATCCTGCTAGCATGATTGCTCAAGCTTTAACAATGTACAAAAGCCTTGTCATCAATGGTCCAAGCAAAGATCACCAAGAAACACAAGCACTTGATGAAACAGATTTGGAAGAGTTGGAAGACATGGGTGAGAAACATATATCAGAAGGCTCTAATAACCGATCAGGCTCAATATCATTTGACACAGAGAAACCAGGTCACACCGGTGAACCACGATTTTCTCTTCAGAACCGCAACAAGGATCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

411

Amino Acids

45.02

Weight (kDa)

6.35

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	65 - 235	2.5e-35	SPFH domain / Band 7 family
Band_7_C	PF16200	286 - 344	8.3e-24	C-terminal region of band_7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	253
AccIII	TCCGGA	2 cut(s)	189, 199
AciI	CCGC	9 cut(s)	39, 102, 105, 108, 135, 170, 893, 1216, 1229
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	5 cut(s)	294, 401, 414, 1220, 1233
AcuI	CTGAAG	5 cut(s)	569, 678, 717, 783, 1193
AcyI	GRCGYC	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	4 cut(s)	59, 456, 955, 1022
AfiI	CCNNNNNNNGG	3 cut(s)	45, 626, 1222
AgeI	ACCGGT	1 cut(s)	1187
AgsI	TTSAA	3 cut(s)	114, 161, 984
AjnI	CCWGG	3 cut(s)	780, 846, 1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	964, 996
AleI	CACNNNNGTG	1 cut(s)	1188
Alw21I	GWGCWC	2 cut(s)	796, 829
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	5 cut(s)	294, 401, 414, 1220, 1233
Aor13HI	TCCGGA	2 cut(s)	189, 199
AoxI	GGCC	1 cut(s)	844
ApeKI	GCWGC	3 cut(s)	566, 638, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	1017, 1049
AsiGI	ACCGGT	1 cut(s)	1187
AspS9I	GGNCC	3 cut(s)	48, 778, 1043
AsuHPI	GGTGA	5 cut(s)	796, 812, 1049, 1124, 1202
AsuNHI	GCTAGC	1 cut(s)	992
AvaII	GGWCC	3 cut(s)	48, 778, 1043
BaeI	ACNNNNGTAYC	2 cut(s)	352, 385
BamHI	GGATCC	2 cut(s)	406, 1225
BanII	GRGCYC	1 cut(s)	682
BbsI	GAAGAC	2 cut(s)	575, 1110
Bbv12I	GWGCWC	2 cut(s)	796, 829
BbvI	GCAGC	3 cut(s)	553, 625, 779
BccI	CCATC	4 cut(s)	374, 563, 725, 769
BceAI	ACGGC	2 cut(s)	59, 238
BcgI	CGANNNNNNTGC	2 cut(s)	946, 980
BciT130I	CCWGG	3 cut(s)	782, 848, 1179
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	3 cut(s)	818, 822, 993
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	7 cut(s)	105, 108, 170, 567, 639, 768, 894
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	7 cut(s)	106, 109, 171, 568, 640, 769, 895
Bme1390I	CCNGG	3 cut(s)	782, 848, 1179
Bme18I	GGWCC	3 cut(s)	48, 778, 1043
BmgT120I	GGNCC	3 cut(s)	48, 778, 1043
BmiI	GGNNCC	2 cut(s)	408, 1227
BmrFI	CCNGG	3 cut(s)	782, 848, 1179
BmrI	ACTGGG	2 cut(s)	586, 888
BmsI	GCATC	1 cut(s)	767
BmtI	GCTAGC	1 cut(s)	996
BmuI	ACTGGG	2 cut(s)	586, 888
BoxI	GACNNNNGTC	1 cut(s)	579
BpiI	GAAGAC	2 cut(s)	575, 1110
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	5 cut(s)	64, 296, 710, 854, 990
Bsa29I	ATCGAT	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	945
BsaWI	WCCGGW	3 cut(s)	189, 199, 1187
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 626, 1222
Bse118I	RCCGGY	2 cut(s)	137, 1187
Bse1I	ACTGG	3 cut(s)	124, 581, 883
Bse3DI	GCAATG	2 cut(s)	723, 939
BseAI	TCCGGA	2 cut(s)	189, 199
BseBI	CCWGG	3 cut(s)	782, 848, 1179
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	945
BseLI	CCNNNNNNNGG	3 cut(s)	45, 626, 1222
BseMI	GCAATG	2 cut(s)	723, 939
BseMII	CTCAG	3 cut(s)	479, 654, 875
BseNI	ACTGG	3 cut(s)	124, 581, 883
BseXI	GCAGC	3 cut(s)	553, 625, 779
BshFI	GGCC	1 cut(s)	846
BshTI	ACCGGT	1 cut(s)	1187
BshVI	ATCGAT	1 cut(s)	378
BsiHKAI	GWGCWC	2 cut(s)	796, 829
BsiSI	CCGG	4 cut(s)	138, 190, 200, 1188
BslFI	GGGAC	1 cut(s)	850
BslI	CCNNNNNNNGG	3 cut(s)	45, 626, 1222
BsmAI	GTCTC	1 cut(s)	519
BsmFI	GGGAC	1 cut(s)	850
BsnI	GGCC	1 cut(s)	846
Bsp1286I	GDGCHC	3 cut(s)	682, 796, 829
Bsp13I	TCCGGA	2 cut(s)	189, 199
Bsp1407I	TGTACA	2 cut(s)	454, 1020
Bsp143I	GATC	6 cut(s)	286, 406, 495, 1054, 1145, 1225
Bsp1720I	GCTNAGC	1 cut(s)	663
BspACI	CCGC	9 cut(s)	39, 102, 105, 108, 135, 170, 893, 1216, 1229
BspANI	GGCC	1 cut(s)	846
BspCNI	CTCAG	3 cut(s)	478, 655, 874
BspDI	ATCGAT	1 cut(s)	378
BspEI	TCCGGA	2 cut(s)	189, 199
BspLI	GGNNCC	2 cut(s)	408, 1227
BspOI	GCTAGC	1 cut(s)	996
BspPI	GGATC	5 cut(s)	294, 401, 414, 1220, 1233
BsrDI	GCAATG	2 cut(s)	723, 939
BsrFI	RCCGGY	2 cut(s)	137, 1187
BsrGI	TGTACA	2 cut(s)	454, 1020
BsrI	ACTGG	3 cut(s)	124, 581, 883
BssAI	RCCGGY	2 cut(s)	137, 1187
BssECI	CCNNGG	1 cut(s)	945
BssMI	GATC	6 cut(s)	286, 406, 495, 1054, 1145, 1225
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	945
Bst2UI	CCWGG	3 cut(s)	782, 848, 1179
Bst4CI	ACNGT	2 cut(s)	118, 155
Bst6I	CTCTTC	2 cut(s)	1089, 1212
BstACI	GRCGYC	1 cut(s)	167
BstAUI	TGTACA	2 cut(s)	454, 1020
BstC8I	GCNNGC	5 cut(s)	139, 462, 636, 654, 994
BstDEI	CTNAG	4 cut(s)	411, 465, 663, 861
BstKTI	GATC	6 cut(s)	289, 409, 498, 1057, 1148, 1228
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	6 cut(s)	286, 406, 495, 1054, 1145, 1225
BstMWI	GCNNNNNNNGC	3 cut(s)	484, 764, 818
BstNI	CCWGG	3 cut(s)	782, 848, 1179
BstPAI	GACNNNNGTC	1 cut(s)	579
BstSCI	CCNGG	3 cut(s)	780, 846, 1177
BstV1I	GCAGC	3 cut(s)	553, 625, 779
BstV2I	GAAGAC	2 cut(s)	575, 1110
BstX2I	RGATCY	2 cut(s)	406, 1225
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	2 cut(s)	406, 1225
Bsu15I	ATCGAT	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	846
BsuTUI	ATCGAT	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	593
Cac8I	GCNNGC	5 cut(s)	139, 462, 636, 654, 994
Cfr10I	RCCGGY	2 cut(s)	137, 1187
Cfr13I	GGNCC	3 cut(s)	48, 778, 1043
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	175
CsiI	ACCWGGT	2 cut(s)	780, 1177
Csp6I	GTAC	4 cut(s)	58, 455, 954, 1021
CspAI	ACCGGT	1 cut(s)	1187
CviAII	CATG	3 cut(s)	626, 997, 1108
CviQI	GTAC	4 cut(s)	58, 455, 954, 1021
DdeI	CTNAG	4 cut(s)	411, 465, 663, 861
DpnI	GATC	6 cut(s)	288, 408, 497, 1056, 1147, 1227
DpnII	GATC	6 cut(s)	286, 406, 495, 1054, 1145, 1225
DraIII	CACNNNGTG	1 cut(s)	800
DrdI	GACNNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	1089, 1212
EarI	CTCTTC	2 cut(s)	1089, 1212
EciI	GGCGGA	3 cut(s)	28, 91, 124
Eco130I	CCWWGG	1 cut(s)	945
Eco147I	AGGCCT	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	682
Eco47I	GGWCC	3 cut(s)	48, 778, 1043
Eco57I	CTGAAG	5 cut(s)	569, 678, 717, 783, 1193
EcoRII	CCWGG	3 cut(s)	780, 846, 1177
EcoT14I	CCWWGG	1 cut(s)	945
EcoT38I	GRGCYC	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	3 cut(s)	629, 1000, 1111
FalI	AAGNNNNNCTT	2 cut(s)	964, 996
FaqI	GGGAC	1 cut(s)	850
FatI	CATG	3 cut(s)	625, 996, 1107
Fnu4HI	GCNGC	7 cut(s)	105, 108, 170, 567, 639, 768, 894
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	7 cut(s)	105, 108, 170, 567, 639, 768, 894
FspBI	CTAG	3 cut(s)	818, 822, 993
GluI	GCNGC	7 cut(s)	105, 108, 170, 567, 639, 768, 894
HaeIII	GGCC	1 cut(s)	846
HapII	CCGG	4 cut(s)	138, 190, 200, 1188
HgaI	GACGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	629, 1000, 1111
HindIII	AAGCTT	1 cut(s)	1008
HinfI	GANTC	9 cut(s)	186, 228, 262, 331, 337, 436, 685, 692, 787
HpaII	CCGG	4 cut(s)	138, 190, 200, 1188
HphI	GGTGA	5 cut(s)	796, 812, 1049, 1124, 1202
Hpy166II	GTNNAC	2 cut(s)	129, 1193
Hpy188I	TCNGA	8 cut(s)	93, 336, 342, 468, 697, 763, 1129, 1212
Hpy188III	TCNNGA	5 cut(s)	190, 200, 328, 503, 689
Hpy8I	GTNNAC	2 cut(s)	129, 1193
Hpy99I	CGWCG	4 cut(s)	32, 178, 250, 259
HpyAV	CCTTC	6 cut(s)	156, 202, 602, 692, 940, 1124
HpyCH4III	ACNGT	2 cut(s)	118, 155
HpyCH4IV	ACGT	3 cut(s)	248, 363, 393
HpyCH4V	TGCA	3 cut(s)	569, 652, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	484, 764, 818
HpyF3I	CTNAG	4 cut(s)	411, 465, 663, 861
HpySE526I	ACGT	3 cut(s)	248, 363, 393
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	3 cut(s)	629, 1000, 1111
Kpn2I	TCCGGA	2 cut(s)	189, 199
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	6 cut(s)	286, 406, 495, 1054, 1145, 1225
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	3 cut(s)	553, 625, 779
LweI	GCATC	1 cut(s)	767
MabI	ACCWGGT	2 cut(s)	780, 1177
MaeI	CTAG	3 cut(s)	818, 822, 993
MaeII	ACGT	3 cut(s)	248, 363, 393
MaeIII	GTNAC	4 cut(s)	32, 76, 935, 1181
MalI	GATC	6 cut(s)	288, 408, 497, 1056, 1147, 1227
MboI	GATC	6 cut(s)	286, 406, 495, 1054, 1145, 1225
MboII	GAAGA	6 cut(s)	329, 553, 575, 1106, 1115, 1199
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	2 cut(s)	406, 1225
MhlI	GDGCHC	3 cut(s)	682, 796, 829
MluCI	AATT	2 cut(s)	161, 178
MlyI	GAGTC	2 cut(s)	445, 701
MmeI	TCCRAC	2 cut(s)	174, 1080
MroI	TCCGGA	2 cut(s)	189, 199
MroNI	GCCGGC	1 cut(s)	137
MseI	TTAA	2 cut(s)	396, 1013
MslI	CAYNNNNRTG	2 cut(s)	378, 1188
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	4 cut(s)	138, 190, 200, 1188
MspR9I	CCNGG	3 cut(s)	782, 848, 1179
MunI	CAATTG	1 cut(s)	161
MvaI	CCWGG	3 cut(s)	782, 848, 1179
MwoI	GCNNNNNNNGC	3 cut(s)	484, 764, 818
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	6 cut(s)	286, 406, 495, 1054, 1145, 1225
NgoMIV	GCCGGC	1 cut(s)	137
NheI	GCTAGC	1 cut(s)	992
NlaIII	CATG	3 cut(s)	629, 1000, 1111
NlaIV	GGNNCC	2 cut(s)	408, 1227
NmuCI	GTSAC	1 cut(s)	1181
OliI	CACNNNNGTG	1 cut(s)	1188
PceI	AGGCCT	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	2 cut(s)	173, 251
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	7 cut(s)	186, 228, 262, 331, 337, 685, 787
PinAI	ACCGGT	1 cut(s)	1187
PkrI	GCNGC	7 cut(s)	106, 109, 171, 568, 640, 769, 895
PleI	GAGTC	2 cut(s)	444, 700
PpsI	GAGTC	2 cut(s)	444, 700
PshAI	GACNNNNGTC	1 cut(s)	579
Psp1406I	AACGTT	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	780, 846, 1177
PspGI	CCWGG	3 cut(s)	780, 846, 1177
PspN4I	GGNNCC	2 cut(s)	408, 1227
PspPI	GGNCC	3 cut(s)	48, 778, 1043
PsrI	GAACNNNNNNTAC	2 cut(s)	727, 759
PsuI	RGATCY	2 cut(s)	406, 1225
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	4 cut(s)	59, 456, 955, 1022
RsaNI	GTAC	4 cut(s)	58, 455, 954, 1021
RseI	CAYNNNNRTG	2 cut(s)	378, 1188
SaqAI	TTAA	2 cut(s)	396, 1013
SatI	GCNGC	7 cut(s)	105, 108, 170, 567, 639, 768, 894
Sau3AI	GATC	6 cut(s)	286, 406, 495, 1054, 1145, 1225
Sau96I	GGNCC	3 cut(s)	48, 778, 1043
SchI	GAGTC	2 cut(s)	445, 701
ScrFI	CCNGG	3 cut(s)	782, 848, 1179
SduI	GDGCHC	3 cut(s)	682, 796, 829
SexAI	ACCWGGT	2 cut(s)	780, 1177
SfaNI	GCATC	1 cut(s)	767
SgrAI	CRCCGGYG	1 cut(s)	1187
SinI	GGWCC	3 cut(s)	48, 778, 1043
SmiMI	CAYNNNNRTG	2 cut(s)	378, 1188
SmlI	CTYRAG	5 cut(s)	43, 311, 689, 869, 1005
SmoI	CTYRAG	5 cut(s)	43, 311, 689, 869, 1005
Sse9I	AATT	2 cut(s)	161, 178
SseBI	AGGCCT	1 cut(s)	846
SsiI	CCGC	9 cut(s)	39, 102, 105, 108, 135, 170, 893, 1216, 1229
SspMI	CTAG	3 cut(s)	818, 822, 993
StuI	AGGCCT	1 cut(s)	846
StyD4I	CCNGG	3 cut(s)	780, 846, 1177
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	2 cut(s)	118, 155
TaiI	ACGT	3 cut(s)	251, 366, 396
TaqI	TCGA	2 cut(s)	378, 790
TasI	AATT	2 cut(s)	161, 178
TatI	WGTACW	2 cut(s)	454, 1020
TauI	GCSGC	4 cut(s)	107, 110, 172, 896
TfiI	GAWTC	7 cut(s)	186, 228, 262, 331, 337, 685, 787
Tru1I	TTAA	2 cut(s)	396, 1013
Tru9I	TTAA	2 cut(s)	396, 1013
TscAI	CASTG	1 cut(s)	593
TseFI	GTSAC	1 cut(s)	1181
TseI	GCWGC	3 cut(s)	566, 638, 767
Tsp45I	GTSAC	1 cut(s)	1181
TspDTI	ATGAA	4 cut(s)	17, 254, 293, 1095
TspGWI	ACGGA	4 cut(s)	16, 40, 53, 267
TspRI	CASTG	1 cut(s)	593
VpaK11BI	GGWCC	3 cut(s)	48, 778, 1043
XspI	CTAG	3 cut(s)	818, 822, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.