Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Forward (+)

1393120 .. 1393773

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAACTGCAAGCAGATGCAGAACGGAAAAAGAGAGTTAAAATTCTTGTGTCTGAAGGTTCATCAAGTGGCAAGTCAAATTCCCTTAAATCTACTATTCTTTCTCAGGTGAGAGGGATGCCACCATTTACCAAGCAGAAGGGGAGAGGCGTGCTGCATTTTTGGCTGCCGAAGAACACAACACTTTCACTTCCCAATGATGCTACTGGTCTCTCCTCCCAGATTTCTCAAGCTATGTTGCTTTACAAAAGGTTGGGTGGAAAACCGACCACTGGATCAACTGGAGGCTTTGAGGCTGTTACTCCCTCGGAAAAATCTCAGAGTGCCACTAAAGTGGTCGAGGATGAAACAGTCGGTGAAGAGAAGGCTTCAAAGTTTTCCCTTCAAAACCGGCCTGGGTTTTCTCTTCAAAACGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

141

Amino Acids

15.11

Weight (kDa)

9.89

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	42, 79
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	372, 386, 410
AjnI	CCWGG	1 cut(s)	394
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	154, 166
ApoI	RAATTY	2 cut(s)	42, 79
AsuHPI	GGTGA	2 cut(s)	121, 368
BbvI	GCAGC	2 cut(s)	141, 153
BciT130I	CCWGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	155, 167
BlsI	GCNGC	2 cut(s)	156, 168
Bme1390I	CCNGG	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	7, 108, 190
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	306, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	3 cut(s)	211, 277, 286
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	306, 395
BseGI	GGATG	2 cut(s)	123, 349
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	119, 332
BseNI	ACTGG	3 cut(s)	211, 277, 286
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	141, 153
BshFI	GGCC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	394
Bso31I	GGTCTC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	2 cut(s)	118, 331
BspPI	GGATC	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	390
BsrI	ACTGG	3 cut(s)	211, 277, 286
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	306, 395
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	354, 411
BstC8I	GCNNGC	2 cut(s)	12, 152
BstDEI	CTNAG	2 cut(s)	105, 318
BstF5I	GGATG	2 cut(s)	123, 349
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	141, 153
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	123, 349
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	12, 152
Cfr10I	RCCGGY	1 cut(s)	390
CviJI	RGCY	6 cut(s)	166, 233, 288, 296, 368, 394
CviKI_1	RGCY	6 cut(s)	166, 233, 288, 296, 368, 394
DdeI	CTNAG	2 cut(s)	105, 318
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	354, 411
EarI	CTCTTC	2 cut(s)	354, 411
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	394
FaiI	YATR	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	155, 167
FokI	GGATG	2 cut(s)	130, 356
Fsp4HI	GCNGC	2 cut(s)	155, 167
GluI	GCNGC	2 cut(s)	155, 167
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	1 cut(s)	391
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	2 cut(s)	121, 368
Hpy188I	TCNGA	3 cut(s)	55, 310, 321
HpyAV	CCTTC	4 cut(s)	50, 133, 358, 392
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	10, 20, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	105, 318
Kzo9I	GATC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	92, 192, 233, 258, 267, 381, 404, 408
Lsp1109I	GCAGC	2 cut(s)	141, 153
LweI	GCATC	3 cut(s)	7, 108, 190
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	184, 371, 398
MluCI	AATT	2 cut(s)	42, 79
MnlI	CCTC	7 cut(s)	107, 140, 226, 278, 286, 316, 334
MseI	TTAA	2 cut(s)	39, 87
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	1 cut(s)	275
OliI	CACNNNNGTG	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	156, 168
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	39, 87
SatI	GCNGC	2 cut(s)	155, 167
Sau3AI	GATC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	4 cut(s)	61, 111, 235, 254
SfaNI	GCATC	3 cut(s)	7, 108, 190
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	42, 79
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	42, 79
Tru1I	TTAA	2 cut(s)	39, 87
Tru9I	TTAA	2 cut(s)	39, 87
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	2 cut(s)	154, 166
TspDTI	ATGAA	2 cut(s)	51, 360
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	277
XapI	RAATTY	2 cut(s)	42, 79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.