Rorug01G0439500

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004436
Physical Location & Seq
Reverse (-)
53815928 .. 53817343
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0439500.1

Sequence Viewer

Length: 525 bp
ATGTCGAGGATGATGGAGACCCTAACTCTTGGAAGAGTGGTAGGAGAGGTTGTGGACATGTTCACCCCAACTGTGAAAATGGATGTAATTTACAGTAGCAACAAACAAGTTTCTAATGGCCATGAGCTCATGCCTTCTGTCATTACTGCTAAGCCTCGCGTCGACATCGGAGGTGAAGATATGAGGGCTGCTTATACATTAGTTATGACAGATCCTGATTTCCCAAGCCCCAGTGATCCATACTTGAGAGAACATCTCCACTGGTTGGTGACAGATATTCCTGGTACCACTGATGTCTCCTTTGGAAGAGAAGTTGTGGAGTATGAAACTCCGAAACCGGTGCTGGGGATTCACCGTTTCGTGTTTCTGCTGTTCAAGCAGGCCAGAGGAAGGCAGACGGTGAGAGTTCCGGCGTCACAGGACAACTTCAACACAAGACAATTTTCACAAGAGAATGGTCTTGGCCTGCCTGTGGCTGCTGTCTACTTCAATGCACAAAGAGAAACTGCTGCCAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

174

Amino Acids

19.65

Weight (kDa)

6.92

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 60 - 162 4.2e-11 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 265
AccI GTMKAC 2 cut(s) 162, 483
AccII CGCG 1 cut(s) 159
AclWI GGATC 2 cut(s) 206, 230
AcoI YGGCCR 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
AflIII ACRYGT 1 cut(s) 57
AgeI ACCGGT 1 cut(s) 337
AgsI TTSAA 3 cut(s) 376, 430, 490
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 11, 301
AlwI GGATC 2 cut(s) 206, 230
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 3 cut(s) 118, 381, 463
ApeKI GCWGC 3 cut(s) 188, 476, 509
AsiGI ACCGGT 1 cut(s) 337
Asp718I GGTACC 1 cut(s) 284
AsuHPI GGTGA 5 cut(s) 55, 185, 280, 344, 412
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 175, 463, 496
BccI CCATC 1 cut(s) 7
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 11, 301
BisI GCNGC 3 cut(s) 189, 477, 510
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 190, 478, 511
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 240, 272
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 231, 266
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 15, 88
BseLI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
BseNI ACTGG 2 cut(s) 231, 266
BseXI GCAGC 3 cut(s) 175, 463, 496
BseYI CCCAGC 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 120, 383, 465
BshNI GGYRCC 1 cut(s) 284
BshTI ACCGGT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 338, 410
BslI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
BsmAI GTCTC 2 cut(s) 11, 301
BsnI GGCC 3 cut(s) 120, 383, 465
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 211, 235
Bsp1720I GCTNAGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 120, 383, 465
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 2 cut(s) 206, 230
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 2 cut(s) 231, 266
BssAI RCCGGY 1 cut(s) 337
BssMI GATC 2 cut(s) 211, 235
BssNI GRCGYC 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 4 cut(s) 73, 95, 356, 400
Bst6I CTCTTC 2 cut(s) 28, 301
BstACI GRCGYC 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 381, 467
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 15, 88
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 2 cut(s) 214, 238
BstMAI GTCTC 2 cut(s) 11, 301
BstMBI GATC 2 cut(s) 211, 235
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 175, 463, 496
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 120, 383, 465
BtsCI GGATG 2 cut(s) 15, 88
BtsIMutI CAGTG 3 cut(s) 238, 259, 288
Cac8I GCNNGC 2 cut(s) 381, 467
CaiI CAGNNNCTG 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 337
CseI GACGC 2 cut(s) 148, 402
Csp6I GTAC 1 cut(s) 285
CspAI ACCGGT 1 cut(s) 337
CviAII CATG 3 cut(s) 58, 122, 130
CviJI RGCY 8 cut(s) 120, 127, 154, 188, 228, 383, 465, 476
CviKI_1 RGCY 8 cut(s) 120, 127, 154, 188, 228, 383, 465, 476
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 213, 237
DpnII GATC 2 cut(s) 211, 235
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 28, 301
EarI CTCTTC 2 cut(s) 28, 301
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 3 cut(s) 61, 125, 133
FaiI YATR 8 cut(s) 59, 123, 131, 182, 195, 206, 241, 324
FatI CATG 3 cut(s) 57, 121, 129
FblI GTMKAC 2 cut(s) 162, 483
Fnu4HI GCNGC 3 cut(s) 189, 477, 510
FokI GGATG 2 cut(s) 22, 95
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 189, 477, 510
GluI GCNGC 3 cut(s) 189, 477, 510
GsaI CCCAGC 1 cut(s) 347
HaeIII GGCC 3 cut(s) 120, 383, 465
HapII CCGG 2 cut(s) 338, 410
HgaI GACGC 2 cut(s) 148, 402
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 3 cut(s) 61, 125, 133
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 349
HpaII CCGG 2 cut(s) 338, 410
HphI GGTGA 5 cut(s) 55, 185, 280, 344, 412
Hpy166II GTNNAC 4 cut(s) 55, 63, 163, 484
Hpy188I TCNGA 2 cut(s) 170, 333
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 4 cut(s) 55, 63, 163, 484
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 144, 384
HpyCH4III ACNGT 4 cut(s) 73, 95, 356, 400
HpyCH4V TGCA 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 3 cut(s) 61, 125, 133
KpnI GGTACC 1 cut(s) 288
Kzo9I GATC 2 cut(s) 211, 235
Lsp1109I GCAGC 3 cut(s) 175, 463, 496
MaeIII GTNAC 2 cut(s) 268, 414
MalI GATC 2 cut(s) 213, 237
MboI GATC 2 cut(s) 211, 235
MboII GAAGA 3 cut(s) 45, 188, 318
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 2 cut(s) 87, 440
MluNI TGGCCA 1 cut(s) 120
MnlI CCTC 5 cut(s) 40, 164, 165, 177, 380
Mox20I TGGCCA 1 cut(s) 120
MscI TGGCCA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 120
MspI CCGG 2 cut(s) 338, 410
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 2 cut(s) 211, 235
NlaIII CATG 3 cut(s) 61, 125, 133
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 268, 414
NspI RCATGY 1 cut(s) 61
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 265
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 3 cut(s) 190, 478, 511
PscI ACATGT 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SacI GAGCTC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 3 cut(s) 189, 477, 510
Sau3AI GATC 2 cut(s) 211, 235
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 129
SetI ASST 3 cut(s) 51, 129, 175
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 87, 440
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 4 cut(s) 73, 95, 356, 400
TaqI TCGA 2 cut(s) 5, 162
TasI AATT 2 cut(s) 87, 440
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 3 cut(s) 238, 266, 295
TseFI GTSAC 2 cut(s) 268, 414
TseI GCWGC 3 cut(s) 188, 476, 509
Tsp45I GTSAC 2 cut(s) 268, 414
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 3 cut(s) 238, 266, 295
Van91I CCANNNNNTGG 1 cut(s) 265
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 162, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.