FvH4_7g33130

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004436
Physical Location & Seq
Forward (+)
23646272 .. 23649888
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33130.t1

Sequence Viewer

Length: 1224 bp
ATGAACAACCTCACCAAGCTCACCTCGCTCAACGCCATCAGATCCCTCCGCCATTCTCACTCGCCGTCGCCGGCGACGGCTCTCCGGACCCTCACAACCTGCTCGTCGCTCATCCGCAACCGCTCGATCGCGTCCTCTCCGGCTGCTTCTTCGCTCCGTCCGGCGCAGAGCTTTCTCGGCGGCGTGCGACATTTCCGTGCCGGCAACAACAGCGATTCGAGAAGCCATGAGATTGCTCCTCCAATCAACTGGGGAATTCGGATTGTGCCGGAACGTATGGCTTGTGTGATTGAGCGCTTAGGGAAGTACCACGCCACTTTGCACTCTGGGATGCATTTCTTGATTCCACTTGTCGACAGAATTGCTTTCGTGCATTCGTTGAAAGAGGAAGTGTTTAATGTGCCTGACCAGACAGCTGTTACCCAAGACAATGTTAGGGTTCAGGTTGATGGGGTTATTTACCTTAAGATTGAAGACCCCCACCTGGCCTCTTATGGAGCTGAGCATCCTTTTGATGCAGCTATTCAGGTTGCTCAGGGGATCATGCGTTCTGCACTTGGGAAACTTACTCTTGACAATGCATTCAAGGAAAGGGAAAACATCAACGATGAGATAGTGAGGGGTGTCAATGAAGCTGCAACATCATATGGCTTGAAGTGCATCCGATGTGTGATAAAGGACATAAATCCTCCTCAAACAGTGAGGCAAGCAATGGAACTGCAAGCAGATGCAGAACGGAAAAAGAGAGTTAAAATTCTTGTGTCTGAAGGTGAGAGGGATGCTGCCATTAACCAAGCAGAAGGGGAGAGGCGTGCTGCATTTTTGGCTGCCGAAGGAGAACTTGCTAAAGCAGATGCAGCTTCCAAAGGAATTTCACTTGTATCTAAGAGTCTTATGGAAGAAGGGGGTATAGAGGCTGCTGGTTTGAAAGTCGCTGAGCAGTATGTTATGGCTTTTGGAAATGTCGCCAAACAGAGCACAACACTTTTACTTCCCAATGATGCTACTGGTCTCTCCTCCCAGATTTCTCAAGCCATGTTGCTTTACAAAAGGTTGGGTGGGAAACCGACCACTGGATCAACTGGAGGCTTTGAGGCCGTTACTCCCTCGGAAAAATCTCAGAGTGCCACTAAAGTGATTGAGGATGAAACAGTCGGTGAAGATAAGGCTTCAAAGTTTTCCCTTCAAAACCGGCCTGGGTTTTCTCTTCAAAACAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

408

Amino Acids

44.05

Weight (kDa)

8.91

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 88 - 269 5.8e-33 SPFH domain / Band 7 family
Band_7_C PF16200 293 - 352 2.6e-18 C-terminal region of band_7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 131
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 4 cut(s) 49, 115, 121, 180
AclWI GGATC 3 cut(s) 36, 548, 1084
AcsI RAATTY 3 cut(s) 255, 753, 870
AcuI CTGAAG 1 cut(s) 786
AfaI GTAC 1 cut(s) 308
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 484, 1073
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 8 cut(s) 382, 473, 586, 655, 928, 1173, 1187, 1211
AjnI CCWGG 2 cut(s) 483, 1195
AleI CACNNNNGTG 1 cut(s) 1133
AloI GAACNNNNNNTCC 2 cut(s) 532, 564
AluBI AGCT 7 cut(s) 19, 171, 416, 500, 521, 635, 860
AluI AGCT 7 cut(s) 19, 171, 416, 500, 521, 635, 860
Alw21I GWGCWC 1 cut(s) 980
Alw26I GTCTC 1 cut(s) 1016
AlwI GGATC 3 cut(s) 36, 548, 1084
Aor13HI TCCGGA 1 cut(s) 84
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 3 cut(s) 486, 1095, 1193
ApeKI GCWGC 8 cut(s) 143, 518, 635, 782, 815, 827, 857, 917
ApoI RAATTY 3 cut(s) 255, 753, 870
AspLEI GCGC 2 cut(s) 166, 297
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 4 cut(s) 4, 13, 782, 1169
AvaII GGWCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 980
BbvI GCAGC 8 cut(s) 130, 530, 622, 769, 802, 814, 869, 904
BccI CCATC 2 cut(s) 44, 443
BceAI ACGGC 3 cut(s) 49, 93, 1082
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 2 cut(s) 485, 1197
BcoDI GTCTC 1 cut(s) 1016
BfoI RGCGCY 1 cut(s) 298
BfrI CTTAAG 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 9 cut(s) 144, 181, 519, 636, 783, 816, 828, 858, 918
BlpI GCTNAGC 2 cut(s) 501, 936
BlsI GCNGC 9 cut(s) 145, 182, 520, 637, 784, 817, 829, 859, 919
Bme1390I CCNGG 2 cut(s) 485, 1197
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 2 cut(s) 485, 1197
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 8 cut(s) 321, 505, 514, 669, 718, 769, 844, 991
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 1104
Bpu10I CCTNAGC 2 cut(s) 298, 534
Bpu1102I GCTNAGC 2 cut(s) 501, 936
BpuEI CTTGAG 1 cut(s) 1014
BsaI GGTCTC 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 1107, 1196
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 1073
Bse118I RCCGGY 3 cut(s) 70, 200, 1191
Bse1I ACTGG 4 cut(s) 254, 1012, 1078, 1087
Bse3DI GCAATG 1 cut(s) 717
BseAI TCCGGA 1 cut(s) 84
BseBI CCWGG 2 cut(s) 485, 1197
BseDI CCNNGG 2 cut(s) 1107, 1196
BseGI GGATG 6 cut(s) 111, 336, 505, 660, 784, 1150
BseLI CCNNNNNNNGG 2 cut(s) 484, 1073
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 4 cut(s) 492, 548, 927, 1133
BseNI ACTGG 4 cut(s) 254, 1012, 1078, 1087
BseRI GAGGAG 3 cut(s) 228, 681, 1006
BseXI GCAGC 8 cut(s) 130, 530, 622, 769, 802, 814, 869, 904
BsgI GTGCAG 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 488, 1097, 1195
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 980
BsiSI CCGG 7 cut(s) 71, 85, 140, 161, 201, 269, 1192
BslI CCNNNNNNNGG 2 cut(s) 484, 1073
BsmAI GTCTC 1 cut(s) 1016
BsmI GAATGC 2 cut(s) 373, 581
BsnI GGCC 3 cut(s) 488, 1097, 1195
Bso31I GGTCTC 1 cut(s) 1016
Bsp1286I GDGCHC 1 cut(s) 980
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 4 cut(s) 41, 126, 540, 1076
Bsp1720I GCTNAGC 2 cut(s) 501, 936
BspACI CCGC 4 cut(s) 49, 115, 121, 180
BspANI GGCC 3 cut(s) 488, 1097, 1195
BspCNI CTCAG 4 cut(s) 493, 547, 928, 1132
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 3 cut(s) 36, 548, 1084
BspTI CTTAAG 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 1016
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 717
BsrFI RCCGGY 3 cut(s) 70, 200, 1191
BsrI ACTGG 4 cut(s) 254, 1012, 1078, 1087
BssAI RCCGGY 3 cut(s) 70, 200, 1191
BssECI CCNNGG 2 cut(s) 1107, 1196
BssMI GATC 4 cut(s) 41, 126, 540, 1076
Bst2UI CCWGG 2 cut(s) 485, 1197
Bst4CI ACNGT 2 cut(s) 700, 1153
Bst6I CTCTTC 1 cut(s) 1212
BstAFI CTTAAG 1 cut(s) 464
BstC8I GCNNGC 6 cut(s) 72, 185, 202, 708, 723, 813
BstDEI CTNAG 6 cut(s) 298, 501, 534, 885, 936, 1119
BstF5I GGATG 6 cut(s) 111, 336, 505, 660, 784, 1150
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 2 cut(s) 166, 297
BstKTI GATC 4 cut(s) 44, 129, 543, 1079
BstMAI GTCTC 1 cut(s) 1016
BstMBI GATC 4 cut(s) 41, 126, 540, 1076
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 6 cut(s) 25, 177, 210, 657, 824, 857
BstNI CCWGG 2 cut(s) 485, 1197
BstSCI CCNGG 2 cut(s) 483, 1195
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 8 cut(s) 130, 530, 622, 769, 802, 814, 869, 904
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 249
BstYI RGATCY 1 cut(s) 41
BsuRI GGCC 3 cut(s) 488, 1097, 1195
BtsCI GGATG 6 cut(s) 111, 336, 505, 660, 784, 1150
BtsIMutI CAGTG 2 cut(s) 705, 1071
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 6 cut(s) 72, 185, 202, 708, 723, 813
CfoI GCGC 2 cut(s) 166, 297
Cfr10I RCCGGY 3 cut(s) 70, 200, 1191
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 227, 544, 1036
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 6 cut(s) 298, 501, 534, 885, 936, 1119
DpnI GATC 4 cut(s) 43, 128, 542, 1078
DpnII GATC 4 cut(s) 41, 126, 540, 1076
Eam1104I CTCTTC 1 cut(s) 1212
EarI CTCTTC 1 cut(s) 1212
EciI GGCGGA 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 1016
Eco47I GGWCC 1 cut(s) 87
Eco47III AGCGCT 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 786
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 483, 1195
EcoT22I ATGCAT 2 cut(s) 336, 583
FaeI CATG 3 cut(s) 230, 547, 1039
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FatI CATG 3 cut(s) 226, 543, 1035
FauNDI CATATG 1 cut(s) 646
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 9 cut(s) 144, 181, 519, 636, 783, 816, 828, 858, 918
FokI GGATG 6 cut(s) 98, 343, 492, 647, 791, 1157
Fsp4HI GCNGC 9 cut(s) 144, 181, 519, 636, 783, 816, 828, 858, 918
GlaI GCGC 2 cut(s) 165, 296
GluI GCNGC 9 cut(s) 144, 181, 519, 636, 783, 816, 828, 858, 918
GsuI CTGGAG 1 cut(s) 1104
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 3 cut(s) 488, 1097, 1195
HapII CCGG 7 cut(s) 71, 85, 140, 161, 201, 269, 1192
HgaI GACGC 1 cut(s) 120
HhaI GCGC 2 cut(s) 166, 297
Hin1II CATG 3 cut(s) 230, 547, 1039
Hin6I GCGC 2 cut(s) 164, 295
HinP1I GCGC 2 cut(s) 164, 295
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 3 cut(s) 215, 343, 889
HpaII CCGG 7 cut(s) 71, 85, 140, 161, 201, 269, 1192
HphI GGTGA 4 cut(s) 4, 13, 782, 1169
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 6 cut(s) 41, 261, 665, 766, 1111, 1122
Hpy188III TCNNGA 4 cut(s) 85, 219, 340, 572
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 3 cut(s) 70, 79, 109
HpyAV CCTTC 5 cut(s) 761, 794, 827, 896, 1193
HpyCH4III ACNGT 2 cut(s) 700, 1153
HpyCH4IV ACGT 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 177, 210, 657, 824, 857
HpyF3I CTNAG 6 cut(s) 298, 501, 534, 885, 936, 1119
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 3 cut(s) 230, 547, 1039
HspAI GCGC 2 cut(s) 164, 295
Kpn2I TCCGGA 1 cut(s) 84
KroI GCCGGC 2 cut(s) 70, 200
KroNI GCCGGC 2 cut(s) 72, 202
Kzo9I GATC 4 cut(s) 41, 126, 540, 1076
LmnI GCTCC 3 cut(s) 159, 241, 497
Lsp1109I GCAGC 8 cut(s) 130, 530, 622, 769, 802, 814, 869, 904
LweI GCATC 8 cut(s) 321, 505, 514, 669, 718, 769, 844, 991
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 418, 1099
MalI GATC 4 cut(s) 43, 128, 542, 1078
MbiI CCGCTC 1 cut(s) 123
MboI GATC 4 cut(s) 41, 126, 540, 1076
MboII GAAGA 5 cut(s) 141, 485, 911, 1172, 1199
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 980
MluCI AATT 4 cut(s) 255, 360, 753, 870
MlyI GAGTC 1 cut(s) 898
Mph1103I ATGCAT 2 cut(s) 336, 583
MreI CGCCGGCG 1 cut(s) 70
MroI TCCGGA 1 cut(s) 84
MroNI GCCGGC 2 cut(s) 70, 200
MseI TTAA 4 cut(s) 396, 465, 750, 789
MslI CAYNNNNRTG 2 cut(s) 195, 1133
MspA1I CMGCKG 1 cut(s) 416
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 7 cut(s) 71, 85, 140, 161, 201, 269, 1192
MspR9I CCNGG 2 cut(s) 485, 1197
Mva1269I GAATGC 2 cut(s) 373, 581
MvaI CCWGG 2 cut(s) 485, 1197
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 6 cut(s) 25, 177, 210, 657, 824, 857
NaeI GCCGGC 2 cut(s) 72, 202
NdeI CATATG 1 cut(s) 646
NdeII GATC 4 cut(s) 41, 126, 540, 1076
NgoMIV GCCGGC 2 cut(s) 70, 200
NlaIII CATG 3 cut(s) 230, 547, 1039
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 156
NsiI ATGCAT 2 cut(s) 336, 583
OliI CACNNNNGTG 1 cut(s) 1133
PctI GAATGC 2 cut(s) 373, 581
PdiI GCCGGC 2 cut(s) 72, 202
PfeI GAWTC 2 cut(s) 215, 343
PkrI GCNGC 9 cut(s) 145, 182, 520, 637, 784, 817, 829, 859, 919
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 1 cut(s) 897
PpsI GAGTC 1 cut(s) 897
Psp6I CCWGG 2 cut(s) 483, 1195
PspGI CCWGG 2 cut(s) 483, 1195
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 87
PsuI RGATCY 1 cut(s) 41
PvuI CGATCG 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 2 cut(s) 195, 1133
SalI GTCGAC 1 cut(s) 353
SaqAI TTAA 4 cut(s) 396, 465, 750, 789
SatI GCNGC 9 cut(s) 144, 181, 519, 636, 783, 816, 828, 858, 918
Sau3AI GATC 4 cut(s) 41, 126, 540, 1076
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 1 cut(s) 898
ScrFI CCNGG 2 cut(s) 485, 1197
SduI GDGCHC 1 cut(s) 980
SfaNI GCATC 8 cut(s) 321, 505, 514, 669, 718, 769, 844, 991
SgrAI CRCCGGYG 1 cut(s) 70
SinI GGWCC 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 195, 1133
SmlI CTYRAG 2 cut(s) 464, 1029
SmoI CTYRAG 2 cut(s) 464, 1029
Sse9I AATT 4 cut(s) 255, 360, 753, 870
SsiI CCGC 4 cut(s) 49, 115, 121, 180
StyD4I CCNGG 2 cut(s) 483, 1195
TaaI ACNGT 2 cut(s) 700, 1153
TaiI ACGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 125, 218, 354
TasI AATT 4 cut(s) 255, 360, 753, 870
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 2 cut(s) 215, 343
Tru1I TTAA 4 cut(s) 396, 465, 750, 789
Tru9I TTAA 4 cut(s) 396, 465, 750, 789
TscAI CASTG 2 cut(s) 705, 1078
TseI GCWGC 8 cut(s) 143, 518, 635, 782, 815, 827, 857, 917
TspDTI ATGAA 3 cut(s) 17, 645, 1161
TspGWI ACGGA 3 cut(s) 146, 185, 751
TspRI CASTG 2 cut(s) 705, 1078
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 3 cut(s) 255, 753, 870
XmiI GTMKAC 1 cut(s) 354
Zsp2I ATGCAT 2 cut(s) 336, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.