RchiOBHm_Chr1g0383201

Stomatin-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
67652081 .. 67655767
3687 bp
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UTR
Exon/CDS
Intron
PRQ60614

Sequence Viewer

Length: 1239 bp
ATGAACAACCTCATCAAGCTCAGCTCCCTCAACGCCTTGAGATCCCTCCGCCATTCTCAGCCGTCGGCGACGGCGACTGCGGCTCTCCGGACCCTCACCACCAGCTCGTCGCCCCTCGGCAACCGCTCGCTCGTGCCCGCTCCGTCTTCCTCGATCGTTCCCGGCGCGCAGAGTTTTCTCGGCGTTCGACATTTCCGTGGCAGCATCAACAGCGATTCCAAGAACCATGAGATTGCTCCACCAATCAACTGGGGAATTCGGATTGTGCCGGAACGTATGGCTTTTGTGATTGAGCGGTTTGGGAAGTACCACACGACTCTGCAGTCTGGGATCCATTTTCTGATTCCGTTTGTCGACAGAATTGCTTTCGTGCATTCGTTGAAAGAGGAGGTCTTTAATGTGCCAGACCAGGCAGCTATCACCCAAGACAATGTCAGGATTCAGGTTGATGGGGTTATTTACCTGAAGATTGAGGACCCCCACCTGGCCTCCTATGGATCTGTGCGTCCTTTTGATGCAGCTATTCAGCTTGCTCAGGGGATCATGCGTACAGCAATTGCGAAACTTACTCTTGACAATGCATTCAAGGAAAGAGAAAACCTCAATGATGAGATAGTGAGGGTAGTCAACGAAGCTGCAACAGCATATGGCTTGAGGTGCATCCGATATGTGATAAGGGACATAACTCCTCCTCTTGCGGTGAGGCAATCTATGGAAATGCAAGCAGATGCAGAACGCAAAAAGAGAGTTAAAATTCTTGTGTCTGAAGGTGAAAGGGATGCCGCCATTAACCAAGCAGAAGGGGAGAGGCGTGCTGCATTTTTAGCTGCAGAAGGAGAACTTGCTAAAGCAGATGCGGCTTCTAAAGGAATTTCCCTTGTATCAAAGAGTCTTATGGAAGCTGGGGGTATAGAGGCTGCTGGTTTGAAAGTCGCTGAGCAGTATGTCATTGCATTCGGAAATCTGGCGAAACAGGGCACCTCAACAGTGTTTCTTCCCAATGATGCTACTGGTGTCTCCTCCATGATTTCTCAAGCCATTTCTCTTTATAAAAGGTTGGGTGGGGATCCAACCACTGGATCAACTGGAGGCTTTAAGGCTGATACTCCCTCGAAAGAATCTCAGCATGCAACTAAGTTGATTGAGGAAACAGTTGATGGAGATAAGGCTTCAAAGTTTTCCCTTCAAAACCAGAAGGTGCCTGATGAACTTGGGTTTTCTCTTCAAAACCGCAAGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

44.67

Weight (kDa)

9.11

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 88 - 269 1.5e-31 SPFH domain / Band 7 family
Band_7_C PF16200 294 - 353 2.9e-17 C-terminal region of band_7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1050
AasI GACNNNNNNGTC 1 cut(s) 322
AccB1I GGYRCC 2 cut(s) 977, 1198
AccB7I CCANNNNNTGG 1 cut(s) 1076
AccBSI CCGCTC 3 cut(s) 126, 140, 295
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 9 cut(s) 49, 80, 124, 138, 295, 698, 783, 857, 1231
AclWI GGATC 8 cut(s) 36, 325, 338, 505, 548, 1061, 1074, 1087
AcsI RAATTY 3 cut(s) 255, 753, 870
AcuI CTGAAG 2 cut(s) 485, 786
AfaI GTAC 2 cut(s) 308, 550
AfiI CCNNNNNNNGG 2 cut(s) 484, 1076
AgsI TTSAA 6 cut(s) 382, 586, 928, 1173, 1187, 1226
AjnI CCWGG 2 cut(s) 408, 483
AluBI AGCT 9 cut(s) 19, 24, 105, 416, 521, 529, 635, 827, 902
AluI AGCT 9 cut(s) 19, 24, 105, 416, 521, 529, 635, 827, 902
Alw26I GTCTC 1 cut(s) 1021
AlwI GGATC 8 cut(s) 36, 325, 338, 505, 548, 1061, 1074, 1087
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 1 cut(s) 486
ApeKI GCWGC 7 cut(s) 201, 413, 518, 635, 815, 827, 917
ApoI RAATTY 3 cut(s) 255, 753, 870
AspLEI GCGC 2 cut(s) 167, 169
AspS9I GGNCC 2 cut(s) 90, 475
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 4 cut(s) 88, 412, 712, 782
AvaII GGWCC 2 cut(s) 90, 475
BaeGI GKGCMC 2 cut(s) 138, 980
BamHI GGATCC 2 cut(s) 330, 1066
BanI GGYRCC 2 cut(s) 977, 1198
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 7 cut(s) 213, 425, 530, 622, 802, 814, 904
BccI CCATC 2 cut(s) 443, 1151
BceAI ACGGC 2 cut(s) 46, 87
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 2 cut(s) 410, 485
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 1021
BfmI CTRYAG 2 cut(s) 320, 828
BlpI GCTNAGC 2 cut(s) 20, 936
Bme1390I CCNGG 3 cut(s) 162, 410, 485
Bme18I GGWCC 2 cut(s) 90, 475
BmgT120I GGNCC 2 cut(s) 90, 475
BmiI GGNNCC 6 cut(s) 92, 332, 477, 979, 1068, 1200
BmrFI CCNGG 3 cut(s) 162, 410, 485
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 7 cut(s) 213, 505, 669, 718, 769, 844, 994
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpmI CTGGAG 1 cut(s) 1107
Bpu10I CCTNAGC 1 cut(s) 534
Bpu1102I GCTNAGC 2 cut(s) 20, 936
BpuEI CTTGAG 3 cut(s) 58, 673, 1017
BpuMI CCSGG 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 115, 196
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 1076
Bse1I ACTGG 4 cut(s) 254, 1015, 1081, 1090
Bse3DI GCAATG 1 cut(s) 948
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 2 cut(s) 410, 485
BseDI CCNNGG 2 cut(s) 115, 196
BseGI GGATG 2 cut(s) 660, 784
BseLI CCNNNNNNNGG 2 cut(s) 484, 1076
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 5 cut(s) 34, 71, 548, 927, 1136
BseNI ACTGG 4 cut(s) 254, 1015, 1081, 1090
BsePI GCGCGC 1 cut(s) 165
BseRI GAGGAG 4 cut(s) 401, 678, 681, 1009
BseSI GKGCMC 2 cut(s) 138, 980
BseXI GCAGC 7 cut(s) 213, 425, 530, 622, 802, 814, 904
BseYI CCCAGC 1 cut(s) 902
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 488
BshNI GGYRCC 2 cut(s) 977, 1198
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 3 cut(s) 88, 162, 269
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 2 cut(s) 484, 1076
BsmAI GTCTC 1 cut(s) 1021
BsmFI GGGAC 1 cut(s) 692
BsmI GAATGC 3 cut(s) 373, 581, 953
BsnI GGCC 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 138, 980
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 7 cut(s) 41, 153, 330, 497, 540, 1066, 1079
Bsp1720I GCTNAGC 2 cut(s) 20, 936
BspACI CCGC 9 cut(s) 49, 80, 124, 138, 295, 698, 783, 857, 1231
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 5 cut(s) 33, 70, 547, 928, 1135
BspEI TCCGGA 1 cut(s) 87
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 6 cut(s) 92, 332, 477, 979, 1068, 1200
BspMAI CTGCAG 2 cut(s) 324, 832
BspPI GGATC 8 cut(s) 36, 325, 338, 505, 548, 1061, 1074, 1087
BspT107I GGYRCC 2 cut(s) 977, 1198
BsrBI CCGCTC 3 cut(s) 126, 140, 295
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 4 cut(s) 254, 1015, 1081, 1090
BssECI CCNNGG 2 cut(s) 115, 196
BssHII GCGCGC 1 cut(s) 165
BssMI GATC 7 cut(s) 41, 153, 330, 497, 540, 1066, 1079
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 410, 485
Bst4CI ACNGT 2 cut(s) 988, 1153
Bst6I CTCTTC 1 cut(s) 1227
BstC8I GCNNGC 7 cut(s) 128, 138, 167, 531, 723, 813, 1128
BstDEI CTNAG 6 cut(s) 20, 57, 534, 936, 1122, 1134
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 2 cut(s) 660, 784
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 2 cut(s) 167, 169
BstKTI GATC 7 cut(s) 44, 156, 333, 500, 543, 1069, 1082
BstMAI GTCTC 1 cut(s) 1021
BstMBI GATC 7 cut(s) 41, 153, 330, 497, 540, 1066, 1079
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 6 cut(s) 80, 210, 641, 657, 824, 857
BstNI CCWGG 2 cut(s) 410, 485
BstNSI RCATGY 1 cut(s) 1130
BstSCI CCNGG 3 cut(s) 160, 408, 483
BstSFI CTRYAG 2 cut(s) 320, 828
BstSLI GKGCMC 2 cut(s) 138, 980
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 7 cut(s) 213, 425, 530, 622, 802, 814, 904
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 4 cut(s) 41, 330, 497, 1066
BstXI CCANNNNNNTGG 1 cut(s) 249
BstYI RGATCY 4 cut(s) 41, 330, 497, 1066
BsuRI GGCC 1 cut(s) 488
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 2 cut(s) 660, 784
BtsIMutI CAGTG 2 cut(s) 993, 1074
Cac8I GCNNGC 7 cut(s) 128, 138, 167, 531, 723, 813, 1128
CfoI GCGC 2 cut(s) 167, 169
Cfr13I GGNCC 2 cut(s) 90, 475
CseI GACGC 1 cut(s) 494
Csp6I GTAC 2 cut(s) 307, 549
CviAII CATG 4 cut(s) 227, 544, 1024, 1127
CviQI GTAC 2 cut(s) 307, 549
DdeI CTNAG 6 cut(s) 20, 57, 534, 936, 1122, 1134
DpnI GATC 7 cut(s) 43, 155, 332, 499, 542, 1068, 1081
DpnII GATC 7 cut(s) 41, 153, 330, 497, 540, 1066, 1079
DrdI GACNNNNNNGTC 1 cut(s) 322
DseDI GACNNNNNNGTC 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 1227
EarI CTCTTC 1 cut(s) 1227
EciI GGCGGA 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 90, 475
Eco57I CTGAAG 2 cut(s) 485, 786
EcoO109I RGGNCCY 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 408, 483
EcoT22I ATGCAT 1 cut(s) 583
FaeI CATG 4 cut(s) 230, 547, 1027, 1130
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FaqI GGGAC 1 cut(s) 692
FatI CATG 4 cut(s) 226, 543, 1023, 1126
FauI CCCGC 1 cut(s) 145
FauNDI CATATG 1 cut(s) 646
FblI GTMKAC 1 cut(s) 354
FokI GGATG 2 cut(s) 647, 791
GlaI GCGC 2 cut(s) 166, 168
GsaI CCCAGC 1 cut(s) 906
GsuI CTGGAG 1 cut(s) 1107
HaeIII GGCC 1 cut(s) 488
HapII CCGG 3 cut(s) 88, 162, 269
HgaI GACGC 1 cut(s) 494
HhaI GCGC 2 cut(s) 167, 169
Hin1II CATG 4 cut(s) 230, 547, 1027, 1130
Hin6I GCGC 2 cut(s) 165, 167
HinP1I GCGC 2 cut(s) 165, 167
HincII GTYRAC 2 cut(s) 355, 628
HindII GTYRAC 2 cut(s) 355, 628
HinfI GANTC 6 cut(s) 215, 316, 343, 439, 889, 1118
HpaII CCGG 3 cut(s) 88, 162, 269
HphI GGTGA 4 cut(s) 88, 412, 712, 782
Hpy166II GTNNAC 2 cut(s) 355, 628
Hpy188I TCNGA 5 cut(s) 261, 342, 665, 766, 959
Hpy188III TCNNGA 3 cut(s) 88, 436, 572
Hpy8I GTNNAC 2 cut(s) 355, 628
Hpy99I CGWCG 3 cut(s) 67, 73, 112
HpyAV CCTTC 5 cut(s) 761, 794, 827, 1189, 1193
HpyCH4III ACNGT 2 cut(s) 988, 1153
HpyCH4IV ACGT 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 210, 641, 657, 824, 857
HpyF3I CTNAG 6 cut(s) 20, 57, 534, 936, 1122, 1134
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 4 cut(s) 230, 547, 1027, 1130
HspAI GCGC 2 cut(s) 165, 167
Kpn2I TCCGGA 1 cut(s) 87
Kzo9I GATC 7 cut(s) 41, 153, 330, 497, 540, 1066, 1079
LmnI GCTCC 3 cut(s) 29, 145, 241
Lsp1109I GCAGC 7 cut(s) 213, 425, 530, 622, 802, 814, 904
LweI GCATC 7 cut(s) 213, 505, 669, 718, 769, 844, 994
MaeII ACGT 1 cut(s) 274
MalI GATC 7 cut(s) 43, 155, 332, 499, 542, 1068, 1081
MbiI CCGCTC 3 cut(s) 126, 140, 295
MboI GATC 7 cut(s) 41, 153, 330, 497, 540, 1066, 1079
MboII GAAGA 4 cut(s) 138, 478, 986, 1214
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 4 cut(s) 41, 330, 497, 1066
MhlI GDGCHC 2 cut(s) 138, 980
MluCI AATT 5 cut(s) 255, 360, 555, 753, 870
MlyI GAGTC 2 cut(s) 310, 898
MmeI TCCRAC 1 cut(s) 1094
Mph1103I ATGCAT 1 cut(s) 583
MroI TCCGGA 1 cut(s) 87
MseI TTAA 4 cut(s) 396, 750, 789, 1095
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 3 cut(s) 88, 162, 269
MspR9I CCNGG 3 cut(s) 162, 410, 485
MunI CAATTG 1 cut(s) 555
Mva1269I GAATGC 3 cut(s) 373, 581, 953
MvaI CCWGG 2 cut(s) 410, 485
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 6 cut(s) 80, 210, 641, 657, 824, 857
NciI CCSGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 646
NdeII GATC 7 cut(s) 41, 153, 330, 497, 540, 1066, 1079
NlaIII CATG 4 cut(s) 230, 547, 1027, 1130
NlaIV GGNNCC 6 cut(s) 92, 332, 477, 979, 1068, 1200
NmeAIII GCCGAG 2 cut(s) 96, 159
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 1 cut(s) 1130
PaeI GCATGC 1 cut(s) 1130
PauI GCGCGC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 193
PctI GAATGC 3 cut(s) 373, 581, 953
PfeI GAWTC 4 cut(s) 215, 343, 439, 1118
PflFI GACNNNGTC 1 cut(s) 431
PflMI CCANNNNNTGG 1 cut(s) 1076
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 2 cut(s) 310, 897
PpsI GAGTC 2 cut(s) 310, 897
PpuMI RGGWCCY 1 cut(s) 475
PsiI TTATAA 1 cut(s) 1050
Psp5II RGGWCCY 1 cut(s) 475
Psp6I CCWGG 2 cut(s) 408, 483
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 2 cut(s) 408, 483
PspN4I GGNNCC 6 cut(s) 92, 332, 477, 979, 1068, 1200
PspPI GGNCC 2 cut(s) 90, 475
PspPPI RGGWCCY 1 cut(s) 475
PstI CTGCAG 2 cut(s) 324, 832
PsuI RGATCY 4 cut(s) 41, 330, 497, 1066
PsyI GACNNNGTC 1 cut(s) 431
PteI GCGCGC 1 cut(s) 165
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 2 cut(s) 308, 550
RsaNI GTAC 2 cut(s) 307, 549
RseI CAYNNNNRTG 1 cut(s) 195
SalI GTCGAC 1 cut(s) 353
SaqAI TTAA 4 cut(s) 396, 750, 789, 1095
Sau3AI GATC 7 cut(s) 41, 153, 330, 497, 540, 1066, 1079
Sau96I GGNCC 2 cut(s) 90, 475
SchI GAGTC 2 cut(s) 310, 898
ScrFI CCNGG 3 cut(s) 162, 410, 485
SduI GDGCHC 2 cut(s) 138, 980
SfaNI GCATC 7 cut(s) 213, 505, 669, 718, 769, 844, 994
SfcI CTRYAG 2 cut(s) 320, 828
SinI GGWCC 2 cut(s) 90, 475
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 3 cut(s) 37, 652, 1032
SmoI CTYRAG 3 cut(s) 37, 652, 1032
SphI GCATGC 1 cut(s) 1130
Sse9I AATT 5 cut(s) 255, 360, 555, 753, 870
SsiI CCGC 9 cut(s) 49, 80, 124, 138, 295, 698, 783, 857, 1231
StyD4I CCNGG 3 cut(s) 160, 408, 483
TaaI ACNGT 2 cut(s) 988, 1153
TaiI ACGT 1 cut(s) 277
TaqI TCGA 4 cut(s) 152, 187, 354, 1112
TasI AATT 5 cut(s) 255, 360, 555, 753, 870
TauI GCSGC 3 cut(s) 83, 785, 860
TfiI GAWTC 4 cut(s) 215, 343, 439, 1118
Tru1I TTAA 4 cut(s) 396, 750, 789, 1095
Tru9I TTAA 4 cut(s) 396, 750, 789, 1095
TscAI CASTG 2 cut(s) 993, 1081
TseI GCWGC 7 cut(s) 201, 413, 518, 635, 815, 827, 917
TspDTI ATGAA 2 cut(s) 17, 1221
TspGWI ACGGA 3 cut(s) 132, 185, 336
TspRI CASTG 2 cut(s) 993, 1081
Tth111I GACNNNGTC 1 cut(s) 431
Van91I CCANNNNNTGG 1 cut(s) 1076
VpaK11BI GGWCC 2 cut(s) 90, 475
XapI RAATTY 3 cut(s) 255, 753, 870
XceI RCATGY 1 cut(s) 1130
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.