MD07G1302100.v1.1

Stomatin-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
36056625 .. 36060157
3533 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1302100.v1.1.491

Sequence Viewer

Length: 1227 bp
ATGAGTATGTTCAAGCTGAATTCCCTCAATTCGCTGCGAGCTCTGAGGCACCTCCACGCCTCCCAATCCGCCGGCCTCAGAGCGCTCACCACCTGCTCGTCATTAATCCTCAAACAGTCGACCCCACTTCTCTCTCCGTCTTCGTCTCCGTCTCCGTCTGCGTTCGCACCGTCGCACAATCTGCTTGCCGTTCGAAACTACCGGAGCAGCCGCGATCTAAGAAGCTATGGGATTACGCCTCCCAGGAATTGGGGCATTCGGATTGTGCCTGAGAAGAAGGCCTTTGTGATTGAGCGGTTCGGAAAGTACATCAAGACTCTGCCGTCTGGAATCCATTTCTTGATTCCGTTTGTGGATAGGATTGCTTATGTGCATTCCTTGAAAGAAGAGGTCATCAATGTTCTTGACCAGTCCGCCATTACCAAGGACAATGTCGCCCTTATGATTGATGGTGTGCTTTATGTTAGGATTGTGGATCCTATGCTGGCCTCCTATGGTGTTGACAATCCTATTAATGCAGCTATTCAGCTTGCACAGACTACCATGCGTATTGCAATCGGGAAAATCACTCTTGACAAGACATTTGAGGAAAGAGAATCCCTCAATGATGAGATAGTGACAATTCTCAACAAGGCTGCATCAGCATGGGGGTTGGAGTGCCTCCGCTATGAAATAAAGGACATAACTCCTCCTCGTGCGGTGAGGGAAGCTATGGAGATGCAAGCAGAAGCAGAACGAAAAAAGAGAGCTCAAATTCTTGAGTCTGAGGGAGAAAGGCAGGCCAACATAAACATCGCAGATGGAAAGAAGAGTGCTATAATTTTAGCGGCAGAAGGAGAAGCGCAATCCATTCTTGCTAAAGCAAATGCAACATCTAGAGGAATTTCCCTTGTGTCAAAGTCTCTCAATGAAAGTGGGGGTGCAGAGGCAGCTGCTTTGAAAATTGCTGAGCAGTACGTTGGTGCCTTTGGTAATATCGCTAAACAGGGCACAACAGTGTTGCTTCCTAGTGCTTCAAATAATCCTGCTGCCATGATCTCTCAAGCCTTAAGTATCTACAAAAGCTTGGTTAACAATCCTTCCACCCTTGGATCAACTGGAGGCACGCACAGTGATGATGCTTCATCAGAAGGATCTGATGGTGTTCGAATGATCGAGGAAACAACTAATCAAGATAATGCAAAGGAATCAGGATTTTCGCTTCAGAACCGCAAGAAAGGAGCATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

44.07

Weight (kDa)

9.12

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 88 - 258 2.4e-35 SPFH domain / Band 7 family
Band_7_C PF16200 297 - 356 2e-22 C-terminal region of band_7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
AasI GACNNNNNNGTC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 101
AccB1I GGYRCC 2 cut(s) 48, 962
AccB7I CCANNNNNTGG 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 119
AccII CGCG 1 cut(s) 213
AciI CCGC 8 cut(s) 69, 211, 295, 414, 664, 698, 827, 1210
AclWI GGATC 4 cut(s) 470, 483, 1099, 1141
AcsI RAATTY 3 cut(s) 19, 753, 882
AcuI CTGAAG 1 cut(s) 1187
AfaI GTAC 2 cut(s) 308, 956
AfeI AGCGCT 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 249
AflII CTTAAG 1 cut(s) 1048
AgsI TTSAA 4 cut(s) 13, 382, 940, 1017
AjnI CCWGG 1 cut(s) 242
AleI CACNNNNGTG 1 cut(s) 995
AluBI AGCT 9 cut(s) 16, 41, 225, 521, 529, 710, 749, 932, 1065
AluI AGCT 9 cut(s) 16, 41, 225, 521, 529, 710, 749, 932, 1065
Alw21I GWGCWC 2 cut(s) 43, 751
Alw26I GTCTC 3 cut(s) 150, 156, 906
AlwI GGATC 4 cut(s) 470, 483, 1099, 1141
Aor51HI AGCGCT 1 cut(s) 84
AoxI GGCC 4 cut(s) 73, 279, 486, 780
ApeKI GCWGC 7 cut(s) 34, 207, 518, 635, 929, 932, 1028
ApoI RAATTY 3 cut(s) 19, 753, 882
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
AseI ATTAAT 2 cut(s) 104, 513
AspLEI GCGC 2 cut(s) 85, 844
AsuHPI GGTGA 2 cut(s) 79, 712
AsuII TTCGAA 2 cut(s) 193, 1147
BaeGI GKGCMC 1 cut(s) 992
BamHI GGATCC 1 cut(s) 475
BanI GGYRCC 2 cut(s) 48, 962
BanII GRGCYC 2 cut(s) 43, 751
BauI CACGAG 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 43, 751
BbvI GCAGC 7 cut(s) 21, 219, 530, 622, 919, 941, 1015
BccI CCATC 3 cut(s) 443, 794, 1133
BceAI ACGGC 2 cut(s) 173, 307
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 3 cut(s) 150, 156, 906
BfaI CTAG 2 cut(s) 876, 1008
BfoI RGCGCY 1 cut(s) 86
BfrI CTTAAG 1 cut(s) 1048
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 9 cut(s) 35, 208, 211, 519, 636, 828, 930, 933, 1029
BlpI GCTNAGC 1 cut(s) 948
BlsI GCNGC 9 cut(s) 36, 209, 212, 520, 637, 829, 931, 934, 1030
Bme1390I CCNGG 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 50, 477, 964
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 3 cut(s) 647, 708, 1108
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpmI CTGGAG 1 cut(s) 1119
Bpu1102I GCTNAGC 1 cut(s) 948
Bpu14I TTCGAA 2 cut(s) 193, 1147
BpuEI CTTGAG 2 cut(s) 779, 1026
BsaJI CCNNGG 3 cut(s) 242, 423, 1087
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 409, 1102
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 3 cut(s) 242, 423, 1087
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 5 cut(s) 35, 91, 261, 756, 939
BseNI ACTGG 2 cut(s) 409, 1102
BseRI GAGGAG 2 cut(s) 678, 681
BseSI GKGCMC 1 cut(s) 992
BseXI GCAGC 7 cut(s) 21, 219, 530, 622, 919, 941, 1015
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 4 cut(s) 75, 281, 488, 782
BshNI GGYRCC 2 cut(s) 48, 962
BsiHKAI GWGCWC 2 cut(s) 43, 751
BsiSI CCGG 2 cut(s) 72, 202
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 3 cut(s) 150, 156, 906
BsmBI CGTCTC 2 cut(s) 150, 156
BsmI GAATGC 2 cut(s) 255, 373
BsnI GGCC 4 cut(s) 75, 281, 488, 782
Bsp119I TTCGAA 2 cut(s) 193, 1147
Bsp1286I GDGCHC 3 cut(s) 43, 751, 992
Bsp143I GATC 6 cut(s) 214, 475, 1035, 1091, 1133, 1152
Bsp1720I GCTNAGC 1 cut(s) 948
BspACI CCGC 8 cut(s) 69, 211, 295, 414, 664, 698, 827, 1210
BspANI GGCC 4 cut(s) 75, 281, 488, 782
BspCNI CTCAG 5 cut(s) 36, 90, 262, 757, 940
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 50, 477, 964
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 4 cut(s) 470, 483, 1099, 1141
BspT104I TTCGAA 2 cut(s) 193, 1147
BspT107I GGYRCC 2 cut(s) 48, 962
BspTI CTTAAG 1 cut(s) 1048
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 2 cut(s) 409, 1102
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 242, 423, 1087
BssMI GATC 6 cut(s) 214, 475, 1035, 1091, 1133, 1152
BssSI CACGAG 1 cut(s) 693
BssT1I CCWWGG 2 cut(s) 423, 1087
Bst2BI CACGAG 1 cut(s) 693
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 4 cut(s) 117, 171, 997, 1112
Bst6I CTCTTC 2 cut(s) 381, 803
BstAFI CTTAAG 1 cut(s) 1048
BstAPI GCANNNNNTGC 1 cut(s) 181
BstBI TTCGAA 2 cut(s) 193, 1147
BstC8I GCNNGC 8 cut(s) 39, 73, 186, 486, 531, 723, 780, 1106
BstDEI CTNAG 6 cut(s) 44, 77, 218, 270, 765, 948
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 844
BstKTI GATC 6 cut(s) 217, 478, 1038, 1094, 1136, 1155
BstMAI GTCTC 3 cut(s) 150, 156, 906
BstMBI GATC 6 cut(s) 214, 475, 1035, 1091, 1133, 1152
BstMWI GCNNNNNNNGC 3 cut(s) 181, 641, 929
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 992
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 7 cut(s) 21, 219, 530, 622, 919, 941, 1015
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 475, 1133
BstYI RGATCY 2 cut(s) 475, 1133
BsuRI GGCC 4 cut(s) 75, 281, 488, 782
BtgZI GCGATG 1 cut(s) 778
BtsIMutI CAGTG 2 cut(s) 1002, 1117
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 8 cut(s) 39, 73, 186, 486, 531, 723, 780, 1106
CfoI GCGC 2 cut(s) 85, 844
Cfr10I RCCGGY 1 cut(s) 71
Csp6I GTAC 2 cut(s) 307, 955
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviAII CATG 3 cut(s) 544, 645, 1033
CviQI GTAC 2 cut(s) 307, 955
DdeI CTNAG 6 cut(s) 44, 77, 218, 270, 765, 948
DpnI GATC 6 cut(s) 216, 477, 1037, 1093, 1135, 1154
DpnII GATC 6 cut(s) 214, 475, 1035, 1091, 1133, 1152
DrdI GACNNNNNNGTC 1 cut(s) 322
DseDI GACNNNNNNGTC 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 381, 803
EarI CTCTTC 2 cut(s) 381, 803
EciI GGCGGA 2 cut(s) 58, 403
Ecl136II GAGCTC 2 cut(s) 41, 749
Eco130I CCWWGG 2 cut(s) 423, 1087
Eco147I AGGCCT 1 cut(s) 281
Eco24I GRGCYC 2 cut(s) 43, 751
Eco47III AGCGCT 1 cut(s) 84
Eco53kI GAGCTC 2 cut(s) 41, 749
Eco57I CTGAAG 1 cut(s) 1187
EcoICRI GAGCTC 2 cut(s) 41, 749
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 2 cut(s) 423, 1087
EcoT38I GRGCYC 2 cut(s) 43, 751
ErhI CCWWGG 2 cut(s) 423, 1087
Esp3I CGTCTC 2 cut(s) 150, 156
FaeI CATG 3 cut(s) 547, 648, 1036
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 3 cut(s) 543, 644, 1032
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 9 cut(s) 35, 208, 211, 519, 636, 828, 930, 933, 1029
FriOI GRGCYC 2 cut(s) 43, 751
Fsp4HI GCNGC 9 cut(s) 35, 208, 211, 519, 636, 828, 930, 933, 1029
FspBI CTAG 2 cut(s) 876, 1008
GlaI GCGC 2 cut(s) 84, 843
GluI GCNGC 9 cut(s) 35, 208, 211, 519, 636, 828, 930, 933, 1029
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 4 cut(s) 75, 281, 488, 782
HapII CCGG 2 cut(s) 72, 202
HhaI GCGC 2 cut(s) 85, 844
Hin1II CATG 3 cut(s) 547, 648, 1036
Hin6I GCGC 2 cut(s) 83, 842
HinP1I GCGC 2 cut(s) 83, 842
HincII GTYRAC 3 cut(s) 120, 502, 1072
HindII GTYRAC 3 cut(s) 120, 502, 1072
HindIII AAGCTT 1 cut(s) 1063
HinfI GANTC 6 cut(s) 316, 330, 343, 596, 761, 1187
HpaI GTTAAC 1 cut(s) 1072
HpaII CCGG 2 cut(s) 72, 202
HphI GGTGA 2 cut(s) 79, 712
Hpy166II GTNNAC 3 cut(s) 120, 502, 1072
Hpy188I TCNGA 8 cut(s) 45, 80, 261, 302, 766, 1129, 1138, 1206
Hpy8I GTNNAC 3 cut(s) 120, 502, 1072
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 4 cut(s) 271, 827, 1089, 1124
HpyCH4III ACNGT 4 cut(s) 117, 171, 997, 1112
HpyCH4IV ACGT 1 cut(s) 957
HpyCH4V TGCA 9 cut(s) 373, 518, 533, 554, 638, 721, 869, 923, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 641, 929
HpyF3I CTNAG 6 cut(s) 44, 77, 218, 270, 765, 948
HpySE526I ACGT 1 cut(s) 957
Hsp92II CATG 3 cut(s) 547, 648, 1036
HspAI GCGC 2 cut(s) 83, 842
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 1072
Kzo9I GATC 6 cut(s) 214, 475, 1035, 1091, 1133, 1152
LmnI GCTCC 2 cut(s) 204, 1220
Lsp1109I GCAGC 7 cut(s) 21, 219, 530, 622, 919, 941, 1015
LweI GCATC 3 cut(s) 647, 708, 1108
MaeI CTAG 2 cut(s) 876, 1008
MaeII ACGT 1 cut(s) 957
MaeIII GTNAC 1 cut(s) 616
MalI GATC 6 cut(s) 216, 477, 1037, 1093, 1135, 1154
MbiI CCGCTC 1 cut(s) 295
MboI GATC 6 cut(s) 214, 475, 1035, 1091, 1133, 1152
MboII GAAGA 4 cut(s) 132, 286, 398, 820
MflI RGATCY 2 cut(s) 475, 1133
MhlI GDGCHC 3 cut(s) 43, 751, 992
MluCI AATT 8 cut(s) 19, 28, 247, 621, 753, 819, 882, 942
MlyI GAGTC 2 cut(s) 310, 770
MmeI TCCRAC 1 cut(s) 633
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 4 cut(s) 104, 513, 1049, 1071
MslI CAYNNNNRTG 3 cut(s) 643, 995, 1113
MspA1I CMGCKG 1 cut(s) 932
MspCI CTTAAG 1 cut(s) 1048
MspI CCGG 2 cut(s) 72, 202
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 2 cut(s) 255, 373
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 181, 641, 929
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 6 cut(s) 214, 475, 1035, 1091, 1133, 1152
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 3 cut(s) 547, 648, 1036
NlaIV GGNNCC 3 cut(s) 50, 477, 964
NmuCI GTSAC 1 cut(s) 616
NspV TTCGAA 2 cut(s) 193, 1147
OliI CACNNNNGTG 1 cut(s) 995
PaqCI CACCTGC 1 cut(s) 101
PceI AGGCCT 1 cut(s) 281
PctI GAATGC 2 cut(s) 255, 373
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 4 cut(s) 330, 343, 596, 1187
PflFI GACNNNGTC 1 cut(s) 431
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 9 cut(s) 36, 209, 212, 520, 637, 829, 931, 934, 1030
PleI GAGTC 2 cut(s) 310, 769
PpsI GAGTC 2 cut(s) 310, 769
PshBI ATTAAT 2 cut(s) 104, 513
Psp124BI GAGCTC 2 cut(s) 43, 751
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 3 cut(s) 50, 477, 964
PsuI RGATCY 2 cut(s) 475, 1133
PsyI GACNNNGTC 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 2 cut(s) 308, 956
RsaNI GTAC 2 cut(s) 307, 955
RseI CAYNNNNRTG 3 cut(s) 643, 995, 1113
SacI GAGCTC 2 cut(s) 43, 751
SalI GTCGAC 1 cut(s) 118
SaqAI TTAA 4 cut(s) 104, 513, 1049, 1071
SatI GCNGC 9 cut(s) 35, 208, 211, 519, 636, 828, 930, 933, 1029
Sau3AI GATC 6 cut(s) 214, 475, 1035, 1091, 1133, 1152
SchI GAGTC 2 cut(s) 310, 770
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 3 cut(s) 43, 751, 992
SfaNI GCATC 3 cut(s) 647, 708, 1108
SfuI TTCGAA 2 cut(s) 193, 1147
SmiMI CAYNNNNRTG 3 cut(s) 643, 995, 1113
SmlI CTYRAG 3 cut(s) 758, 1041, 1048
SmoI CTYRAG 3 cut(s) 758, 1041, 1048
Sse9I AATT 8 cut(s) 19, 28, 247, 621, 753, 819, 882, 942
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 8 cut(s) 69, 211, 295, 414, 664, 698, 827, 1210
SspMI CTAG 2 cut(s) 876, 1008
SstI GAGCTC 2 cut(s) 43, 751
StuI AGGCCT 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 2 cut(s) 423, 1087
TaaI ACNGT 4 cut(s) 117, 171, 997, 1112
TaiI ACGT 1 cut(s) 960
TaqI TCGA 4 cut(s) 119, 193, 1147, 1155
TasI AATT 8 cut(s) 19, 28, 247, 621, 753, 819, 882, 942
TatI WGTACW 1 cut(s) 306
TauI GCSGC 2 cut(s) 213, 830
TfiI GAWTC 4 cut(s) 330, 343, 596, 1187
Tru1I TTAA 4 cut(s) 104, 513, 1049, 1071
Tru9I TTAA 4 cut(s) 104, 513, 1049, 1071
TscAI CASTG 2 cut(s) 1002, 1117
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 7 cut(s) 34, 207, 518, 635, 929, 932, 1028
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 684, 924, 1113
TspGWI ACGGA 4 cut(s) 126, 138, 144, 336
TspRI CASTG 2 cut(s) 1002, 1117
Tth111I GACNNNGTC 1 cut(s) 431
Van91I CCANNNNNTGG 1 cut(s) 249
Vha464I CTTAAG 1 cut(s) 1048
VspI ATTAAT 2 cut(s) 104, 513
XapI RAATTY 3 cut(s) 19, 753, 882
XbaI TCTAGA 1 cut(s) 875
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 2 cut(s) 876, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.