Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008563.1

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Reverse (-)

1900 .. 2942

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008563.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgaacaacctcatcaagctcagctccctcaacgccttgagatccctccgccattctcagccgtcggcgacggcgactgcggctctccggaccctcaccaccagctcgtcgcccctccgcaaccgctcgctcgtgcccgctccgtcttcctcgatcgttcccggcgcgcagagtttgctcggcgttcgacatttccgtggcagcatcaacagcgattccaagaaccatgagattgctccaccaatcaactggggaattcggattgtgccggaacgtatggcttttgtgattgagcggtttgggaagtaccacacgactctgcagtctgggatccattttctgattccgtttgtcgacagaattgcttttgtgcattcgttgaaagaggaggtctttaatgtgccagaccaggcagctatcacccaagacaatgtcaggattcaggttgatggggttatttacctgaagattgaggacccccacctggcctcctatggatctgtgcggccttttgatgcagctattcagcttgctcaggggatcatgcgtacagcaattgcgaaacttactcttgacaatgcattcaaggaaagagaaaacctcaatgatgagatagtggtacgtttatcttctttctctcgtgatgatagtctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

218

Amino Acids

24.15

Weight (kDa)

9.62

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	322
AccBSI	CCGCTC	3 cut(s)	126, 140, 295
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	87
AciI	CCGC	7 cut(s)	49, 80, 118, 124, 138, 295, 505
AclWI	GGATC	5 cut(s)	36, 325, 338, 505, 548
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	3 cut(s)	308, 550, 621
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgsI	TTSAA	2 cut(s)	382, 586
AjnI	CCWGG	2 cut(s)	408, 483
AluBI	AGCT	6 cut(s)	19, 24, 105, 416, 521, 529
AluI	AGCT	6 cut(s)	19, 24, 105, 416, 521, 529
AlwI	GGATC	5 cut(s)	36, 325, 338, 505, 548
Aor13HI	TCCGGA	1 cut(s)	87
AoxI	GGCC	2 cut(s)	486, 506
ApeKI	GCWGC	3 cut(s)	201, 413, 518
ApoI	RAATTY	1 cut(s)	255
AspLEI	GCGC	2 cut(s)	167, 169
AspS9I	GGNCC	2 cut(s)	90, 475
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	88, 412
AvaII	GGWCC	2 cut(s)	90, 475
BaeGI	GKGCMC	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	330
BauI	CACGAG	2 cut(s)	131, 639
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	213, 425, 530
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	46, 87
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	2 cut(s)	410, 485
BcnI	CCSGG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	320
BisI	GCNGC	5 cut(s)	81, 202, 414, 506, 519
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	5 cut(s)	82, 203, 415, 507, 520
Bme1390I	CCNGG	3 cut(s)	162, 410, 485
Bme18I	GGWCC	2 cut(s)	90, 475
BmgT120I	GGNCC	2 cut(s)	90, 475
BmiI	GGNNCC	3 cut(s)	92, 332, 477
BmrFI	CCNGG	3 cut(s)	162, 410, 485
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	213, 505
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	585, 617
Bpu10I	CCTNAGC	1 cut(s)	534
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	254
BseAI	TCCGGA	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	410, 485
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	3 cut(s)	34, 71, 548
BseNI	ACTGG	1 cut(s)	254
BsePI	GCGCGC	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	213, 425, 530
Bsh1236I	CGCG	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	488, 508
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	88, 162, 269
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmI	GAATGC	2 cut(s)	373, 581
BsnI	GGCC	2 cut(s)	488, 508
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp13I	TCCGGA	1 cut(s)	87
Bsp143I	GATC	5 cut(s)	41, 153, 330, 497, 540
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	7 cut(s)	49, 80, 118, 124, 138, 295, 505
BspANI	GGCC	2 cut(s)	488, 508
BspCNI	CTCAG	3 cut(s)	33, 70, 547
BspEI	TCCGGA	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	92, 332, 477
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	5 cut(s)	36, 325, 338, 505, 548
BsrBI	CCGCTC	3 cut(s)	126, 140, 295
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	196
BssHII	GCGCGC	1 cut(s)	165
BssMI	GATC	5 cut(s)	41, 153, 330, 497, 540
BssSI	CACGAG	2 cut(s)	131, 639
Bst2BI	CACGAG	2 cut(s)	131, 639
Bst2UI	CCWGG	2 cut(s)	410, 485
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstC8I	GCNNGC	4 cut(s)	128, 138, 167, 531
BstDEI	CTNAG	3 cut(s)	20, 57, 534
BstDSI	CCRYGG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	167, 169
BstKTI	GATC	5 cut(s)	44, 156, 333, 500, 543
BstMBI	GATC	5 cut(s)	41, 153, 330, 497, 540
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 175, 210
BstNI	CCWGG	2 cut(s)	410, 485
BstSCI	CCNGG	3 cut(s)	160, 408, 483
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	138
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	213, 425, 530
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	3 cut(s)	41, 330, 497
BstXI	CCANNNNNNTGG	1 cut(s)	249
BstYI	RGATCY	3 cut(s)	41, 330, 497
BsuRI	GGCC	2 cut(s)	488, 508
BtgI	CCRYGG	1 cut(s)	196
Cac8I	GCNNGC	4 cut(s)	128, 138, 167, 531
CfoI	GCGC	2 cut(s)	167, 169
Cfr13I	GGNCC	2 cut(s)	90, 475
Csp6I	GTAC	3 cut(s)	307, 549, 620
CviAII	CATG	2 cut(s)	227, 544
CviQI	GTAC	3 cut(s)	307, 549, 620
DdeI	CTNAG	3 cut(s)	20, 57, 534
DpnI	GATC	5 cut(s)	43, 155, 332, 499, 542
DpnII	GATC	5 cut(s)	41, 153, 330, 497, 540
DrdI	GACNNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	90, 475
Eco57I	CTGAAG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	408, 483
EcoT22I	ATGCAT	1 cut(s)	583
FaeI	CATG	2 cut(s)	230, 547
FaiI	YATR	4 cut(s)	228, 278, 495, 545
FatI	CATG	2 cut(s)	226, 543
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	81, 202, 414, 506, 519
Fsp4HI	GCNGC	5 cut(s)	81, 202, 414, 506, 519
GlaI	GCGC	2 cut(s)	166, 168
GluI	GCNGC	5 cut(s)	81, 202, 414, 506, 519
HaeIII	GGCC	2 cut(s)	488, 508
HapII	CCGG	3 cut(s)	88, 162, 269
HhaI	GCGC	2 cut(s)	167, 169
Hin1II	CATG	2 cut(s)	230, 547
Hin6I	GCGC	2 cut(s)	165, 167
HinP1I	GCGC	2 cut(s)	165, 167
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	4 cut(s)	215, 316, 343, 439
HpaII	CCGG	3 cut(s)	88, 162, 269
HphI	GGTGA	2 cut(s)	88, 412
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	261, 342
Hpy188III	TCNNGA	4 cut(s)	88, 436, 572, 641
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	3 cut(s)	67, 73, 112
HpyCH4IV	ACGT	2 cut(s)	274, 622
HpyCH4V	TGCA	4 cut(s)	322, 373, 518, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 175, 210
HpyF3I	CTNAG	3 cut(s)	20, 57, 534
HpySE526I	ACGT	2 cut(s)	274, 622
Hsp92II	CATG	2 cut(s)	230, 547
HspAI	GCGC	2 cut(s)	165, 167
Kpn2I	TCCGGA	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	41, 153, 330, 497, 540
LmnI	GCTCC	3 cut(s)	29, 145, 241
Lsp1109I	GCAGC	3 cut(s)	213, 425, 530
LweI	GCATC	2 cut(s)	213, 505
MaeII	ACGT	2 cut(s)	274, 622
MalI	GATC	5 cut(s)	43, 155, 332, 499, 542
MbiI	CCGCTC	3 cut(s)	126, 140, 295
MboI	GATC	5 cut(s)	41, 153, 330, 497, 540
MboII	GAAGA	3 cut(s)	138, 478, 621
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	3 cut(s)	41, 330, 497
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	255, 360, 555
MlyI	GAGTC	1 cut(s)	310
Mph1103I	ATGCAT	1 cut(s)	583
MroI	TCCGGA	1 cut(s)	87
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	3 cut(s)	88, 162, 269
MspR9I	CCNGG	3 cut(s)	162, 410, 485
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	373, 581
MvaI	CCWGG	2 cut(s)	410, 485
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	80, 175, 210
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	41, 153, 330, 497, 540
NlaIII	CATG	2 cut(s)	230, 547
NlaIV	GGNNCC	3 cut(s)	92, 332, 477
NmeAIII	GCCGAG	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	583
PauI	GCGCGC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 193
PctI	GAATGC	2 cut(s)	373, 581
PfeI	GAWTC	3 cut(s)	215, 343, 439
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	5 cut(s)	82, 203, 415, 507, 520
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	408, 483
PspGI	CCWGG	2 cut(s)	408, 483
PspN4I	GGNNCC	3 cut(s)	92, 332, 477
PspPI	GGNCC	2 cut(s)	90, 475
PspPPI	RGGWCCY	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	3 cut(s)	41, 330, 497
PsyI	GACNNNGTC	1 cut(s)	431
PteI	GCGCGC	1 cut(s)	165
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	308, 550, 621
RsaNI	GTAC	3 cut(s)	307, 549, 620
RseI	CAYNNNNRTG	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	5 cut(s)	81, 202, 414, 506, 519
Sau3AI	GATC	5 cut(s)	41, 153, 330, 497, 540
Sau96I	GGNCC	2 cut(s)	90, 475
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	3 cut(s)	162, 410, 485
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	213, 505
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	2 cut(s)	90, 475
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	3 cut(s)	255, 360, 555
SsiI	CCGC	7 cut(s)	49, 80, 118, 124, 138, 295, 505
StyD4I	CCNGG	3 cut(s)	160, 408, 483
TaiI	ACGT	2 cut(s)	277, 625
TaqI	TCGA	3 cut(s)	152, 187, 354
TasI	AATT	3 cut(s)	255, 360, 555
TauI	GCSGC	2 cut(s)	83, 508
TfiI	GAWTC	3 cut(s)	215, 343, 439
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseI	GCWGC	3 cut(s)	201, 413, 518
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	132, 185, 336
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	90, 475
XapI	RAATTY	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	354
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.