MD01G1230500.v1.1

Stomatin-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
31981691 .. 31989694
8004 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1230500.v1.1.491

Sequence Viewer

Length: 1221 bp
ATGAGTATGTTCAAGCTCAATTCCCTCAGCTCGCTGCGAGCTCTGAGGCACCTCCACGCTTCCCAATCTGCCGGCGTCAGAGCGCTCACCTCCTGTTCGTCATTAATCCTCAAACAGTCGAACCCACTTCTCTCCCCCTCTCCGTCGCCGTTTCCCTTCGCACCGTCGCACAATCTGCTCGCCATTCGGAACTACCGGAGCAGCCGCGATCTCAGAAACTATGGGATTACGCCTCCCAAGAATTGGGGCGTTCGGATTGTGCCTGAGAAGAAGGCCTTTGTGATTGAGCGGTTCGGAAAGTATGTCAAGACTCTGCCTTCTGGAATCCATTTCTTAATTCCTTTTGTGGATAGAATCGCTTATGTGCATTCACTGAAAGAAGAGGTCATCAATGTTCCTGACCAGTCTGCCATTACCAAAGACAATGTCGCCCTTATGATTGATGGTGTGCTTTACGTTAGGATTGTGGATCCTATGTTGGCCTCCTATGGAGTTGACGATCCTATTAATGCAGCTATTCAGCTTGCACAGACTACCATGCGTATTGCTATCGGGAAAATCACCCTTGACAAGACATTTGAGGAAAGGGAATCCCTCAATGATGAGATAGTGACAGTTCTCAACAAGGCTGCATCCGCATGGGGGTTGGAGTGCCTCCGCTATGAAATAAAGGACATAACTCCTCCTCGTGCGGTGAGGGAATCTATGGAGATGCAAGCAGAAGCCGAACGCAAAAAGAGAGCTCAAATTCTTGAGTCTGAGGGAGAAAGGCAGGCCAACATAAATATTGCAGATGGAAAGAAGAGTGCTATAATTTTAGCAGCAGAAGGAGAAGCGCAATCCATTCTTGCTAAAGCGAATGCAACATCTCGAGGAATTTCCCTTGTGTCAAAGACTCTCAAGGAAAGTGGGGGTGCAGAGGCAGCTGCCTTGAAAATTGCTGAGCAGTATGTTGATGCCTTTGGTAATATCGCGAAACAGGGCACAACAGTGTTGCTTCCTAGTGCTTCAAATAATCCTGCTGGCATGATATCTCAAGCCTTAAGTATCTACAAAAGCTTGGTTAACAATCCTTCCACCCTTGGATCAACTGGAGGCACGCACAGTGATGCTTCCTCAGAAGGATCTGATCACGGTGTTCGAATGATCGAGGAGACAAAGAATCAAGATAATGCAAAGGAATCAGGGTTTTCGCTTCAGAACCGCAAGAAAGGAGCATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

407

Amino Acids

44.03

Weight (kDa)

9.18

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 86 - 256 8.4e-36 SPFH domain / Band 7 family
Band_7_C PF16200 295 - 354 1.7e-23 C-terminal region of band_7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AccB7I CCANNNNNTGG 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 2 cut(s) 207, 974
AciI CCGC 6 cut(s) 205, 289, 636, 658, 692, 1204
AclWI GGATC 5 cut(s) 464, 477, 494, 1093, 1132
AcsI RAATTY 2 cut(s) 747, 876
AcuI CTGAAG 1 cut(s) 1181
AcyI GRCGYC 1 cut(s) 75
AfeI AGCGCT 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 243, 642
AflII CTTAAG 1 cut(s) 1042
AgsI TTSAA 3 cut(s) 13, 934, 1011
AleI CACNNNNGTG 1 cut(s) 989
AluBI AGCT 8 cut(s) 16, 30, 41, 515, 523, 743, 926, 1059
AluI AGCT 8 cut(s) 16, 30, 41, 515, 523, 743, 926, 1059
Alw21I GWGCWC 2 cut(s) 43, 745
Alw26I GTCTC 1 cut(s) 1148
AlwI GGATC 5 cut(s) 464, 477, 494, 1093, 1132
Ama87I CYCGRG 1 cut(s) 870
Aor51HI AGCGCT 1 cut(s) 84
AoxI GGCC 3 cut(s) 273, 480, 774
ApeKI GCWGC 7 cut(s) 34, 201, 512, 629, 821, 923, 926
ApoI RAATTY 2 cut(s) 747, 876
ArsI GACNNNNNNTTYG 4 cut(s) 411, 443, 560, 592
AseI ATTAAT 2 cut(s) 104, 507
AspLEI GCGC 2 cut(s) 85, 838
AsuHPI GGTGA 3 cut(s) 79, 553, 706
AsuII TTCGAA 1 cut(s) 1141
AvaI CYCGRG 1 cut(s) 870
BaeGI GKGCMC 1 cut(s) 986
BamHI GGATCC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 2 cut(s) 43, 745
BauI CACGAG 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 43, 745
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 7 cut(s) 21, 213, 524, 616, 833, 913, 935
BccI CCATC 2 cut(s) 437, 788
BceAI ACGGC 1 cut(s) 133
BclI TGATCA 1 cut(s) 1129
BcoDI GTCTC 1 cut(s) 1148
BfaI CTAG 1 cut(s) 1002
BfoI RGCGCY 1 cut(s) 86
BfrI CTTAAG 1 cut(s) 1042
BisI GCNGC 8 cut(s) 35, 202, 205, 513, 630, 822, 924, 927
BlpI GCTNAGC 1 cut(s) 942
BlsI GCNGC 8 cut(s) 36, 203, 206, 514, 631, 823, 925, 928
BmeT110I CYCGRG 1 cut(s) 870
BmiI GGNNCC 2 cut(s) 50, 471
BmsI GCATC 4 cut(s) 641, 702, 946, 1099
BpmI CTGGAG 1 cut(s) 1113
Bpu10I CCTNAGC 1 cut(s) 26
Bpu1102I GCTNAGC 1 cut(s) 942
Bpu14I TTCGAA 1 cut(s) 1141
BpuEI CTTGAG 3 cut(s) 773, 884, 1020
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 1081
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 642
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 403, 1096
BseDI CCNNGG 1 cut(s) 1081
BseGI GGATG 1 cut(s) 632
BseLI CCNNNNNNNGG 2 cut(s) 243, 642
BseMII CTCAG 7 cut(s) 35, 40, 226, 255, 750, 933, 1131
BseNI ACTGG 2 cut(s) 403, 1096
BseRI GAGGAG 3 cut(s) 672, 675, 1166
BseSI GKGCMC 1 cut(s) 986
BseXI GCAGC 7 cut(s) 21, 213, 524, 616, 833, 913, 935
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 2 cut(s) 207, 974
BshFI GGCC 3 cut(s) 275, 482, 776
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 43, 745
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 2 cut(s) 72, 196
BslI CCNNNNNNNGG 2 cut(s) 243, 642
BsmAI GTCTC 1 cut(s) 1148
BsmI GAATGC 2 cut(s) 367, 865
BsnI GGCC 3 cut(s) 275, 482, 776
BsoBI CYCGRG 1 cut(s) 870
Bsp119I TTCGAA 1 cut(s) 1141
Bsp1286I GDGCHC 3 cut(s) 43, 745, 986
Bsp143I GATC 7 cut(s) 208, 469, 499, 1085, 1124, 1129, 1146
Bsp1720I GCTNAGC 1 cut(s) 942
Bsp68I TCGCGA 1 cut(s) 974
BspACI CCGC 6 cut(s) 205, 289, 636, 658, 692, 1204
BspANI GGCC 3 cut(s) 275, 482, 776
BspCNI CTCAG 7 cut(s) 36, 39, 225, 256, 751, 934, 1130
BspFNI CGCG 2 cut(s) 207, 974
BspLI GGNNCC 2 cut(s) 50, 471
BspPI GGATC 5 cut(s) 464, 477, 494, 1093, 1132
BspT104I TTCGAA 1 cut(s) 1141
BspT107I GGYRCC 1 cut(s) 48
BspTI CTTAAG 1 cut(s) 1042
BsrBI CCGCTC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 2 cut(s) 403, 1096
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 1081
BssMI GATC 7 cut(s) 208, 469, 499, 1085, 1124, 1129, 1146
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 1 cut(s) 1081
Bst2BI CACGAG 1 cut(s) 687
Bst4CI ACNGT 6 cut(s) 117, 165, 616, 991, 1106, 1136
Bst6I CTCTTC 2 cut(s) 375, 797
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 1042
BstAPI GCANNNNNTGC 1 cut(s) 175
BstBI TTCGAA 1 cut(s) 1141
BstC8I GCNNGC 9 cut(s) 32, 39, 73, 180, 525, 717, 774, 1024, 1100
BstDEI CTNAG 7 cut(s) 26, 44, 212, 264, 759, 942, 1117
BstF5I GGATG 1 cut(s) 632
BstFNI CGCG 2 cut(s) 207, 974
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 838
BstKTI GATC 7 cut(s) 211, 472, 502, 1088, 1127, 1132, 1149
BstMAI GTCTC 1 cut(s) 1148
BstMBI GATC 7 cut(s) 208, 469, 499, 1085, 1124, 1129, 1146
BstMWI GCNNNNNNNGC 3 cut(s) 175, 635, 923
BstSLI GKGCMC 1 cut(s) 986
BstUI CGCG 2 cut(s) 207, 974
BstV1I GCAGC 7 cut(s) 21, 213, 524, 616, 833, 913, 935
BstX2I RGATCY 2 cut(s) 469, 1124
BstYI RGATCY 2 cut(s) 469, 1124
BsuRI GGCC 3 cut(s) 275, 482, 776
BtsCI GGATG 1 cut(s) 632
BtsIMutI CAGTG 3 cut(s) 371, 996, 1111
BtuMI TCGCGA 1 cut(s) 974
Cac8I GCNNGC 9 cut(s) 32, 39, 73, 180, 525, 717, 774, 1024, 1100
CfoI GCGC 2 cut(s) 85, 838
Cfr10I RCCGGY 1 cut(s) 71
CseI GACGC 1 cut(s) 64
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 3 cut(s) 538, 639, 1027
DdeI CTNAG 7 cut(s) 26, 44, 212, 264, 759, 942, 1117
DpnI GATC 7 cut(s) 210, 471, 501, 1087, 1126, 1131, 1148
DpnII GATC 7 cut(s) 208, 469, 499, 1085, 1124, 1129, 1146
Eam1104I CTCTTC 2 cut(s) 375, 797
EarI CTCTTC 2 cut(s) 375, 797
Ecl136II GAGCTC 2 cut(s) 41, 743
Eco130I CCWWGG 1 cut(s) 1081
Eco147I AGGCCT 1 cut(s) 275
Eco24I GRGCYC 2 cut(s) 43, 745
Eco32I GATATC 1 cut(s) 1032
Eco47III AGCGCT 1 cut(s) 84
Eco53kI GAGCTC 2 cut(s) 41, 743
Eco57I CTGAAG 1 cut(s) 1181
Eco88I CYCGRG 1 cut(s) 870
EcoICRI GAGCTC 2 cut(s) 41, 743
EcoRV GATATC 1 cut(s) 1032
EcoT14I CCWWGG 1 cut(s) 1081
EcoT38I GRGCYC 2 cut(s) 43, 745
ErhI CCWWGG 1 cut(s) 1081
FaeI CATG 3 cut(s) 541, 642, 1030
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 3 cut(s) 537, 638, 1026
FbaI TGATCA 1 cut(s) 1129
Fnu4HI GCNGC 8 cut(s) 35, 202, 205, 513, 630, 822, 924, 927
FokI GGATG 1 cut(s) 619
FriOI GRGCYC 2 cut(s) 43, 745
Fsp4HI GCNGC 8 cut(s) 35, 202, 205, 513, 630, 822, 924, 927
FspBI CTAG 1 cut(s) 1002
GlaI GCGC 2 cut(s) 84, 837
GluI GCNGC 8 cut(s) 35, 202, 205, 513, 630, 822, 924, 927
GsuI CTGGAG 1 cut(s) 1113
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 3 cut(s) 275, 482, 776
HapII CCGG 2 cut(s) 72, 196
HgaI GACGC 1 cut(s) 64
HhaI GCGC 2 cut(s) 85, 838
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 541, 642, 1030
Hin6I GCGC 2 cut(s) 83, 836
HinP1I GCGC 2 cut(s) 83, 836
HincII GTYRAC 2 cut(s) 496, 1066
HindII GTYRAC 2 cut(s) 496, 1066
HindIII AAGCTT 1 cut(s) 1057
HinfI GANTC 9 cut(s) 310, 324, 354, 590, 701, 755, 895, 1162, 1181
HpaI GTTAAC 1 cut(s) 1066
HpaII CCGG 2 cut(s) 72, 196
HphI GGTGA 3 cut(s) 79, 553, 706
Hpy166II GTNNAC 2 cut(s) 496, 1066
Hpy188III TCNNGA 8 cut(s) 307, 321, 398, 553, 752, 870, 973, 1166
Hpy8I GTNNAC 2 cut(s) 496, 1066
Hpy99I CGWCG 2 cut(s) 148, 169
HpyAV CCTTC 6 cut(s) 166, 265, 327, 821, 1083, 1115
HpyCH4III ACNGT 6 cut(s) 117, 165, 616, 991, 1106, 1136
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 9 cut(s) 367, 512, 527, 632, 715, 791, 863, 917, 1175
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 635, 923
HpyF3I CTNAG 7 cut(s) 26, 44, 212, 264, 759, 942, 1117
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 541, 642, 1030
HspAI GCGC 2 cut(s) 83, 836
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 1129
KspAI GTTAAC 1 cut(s) 1066
Kzo9I GATC 7 cut(s) 208, 469, 499, 1085, 1124, 1129, 1146
LmnI GCTCC 2 cut(s) 198, 1214
Lsp1109I GCAGC 7 cut(s) 21, 213, 524, 616, 833, 913, 935
LweI GCATC 4 cut(s) 641, 702, 946, 1099
MaeI CTAG 1 cut(s) 1002
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 610
MalI GATC 7 cut(s) 210, 471, 501, 1087, 1126, 1131, 1148
MbiI CCGCTC 1 cut(s) 289
MboI GATC 7 cut(s) 208, 469, 499, 1085, 1124, 1129, 1146
MboII GAAGA 3 cut(s) 280, 392, 814
MflI RGATCY 2 cut(s) 469, 1124
MhlI GDGCHC 3 cut(s) 43, 745, 986
MluCI AATT 7 cut(s) 19, 241, 336, 747, 813, 876, 936
MlyI GAGTC 3 cut(s) 304, 764, 889
MmeI TCCRAC 1 cut(s) 627
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 5 cut(s) 104, 335, 507, 1043, 1065
MslI CAYNNNNRTG 3 cut(s) 637, 989, 1107
MspA1I CMGCKG 1 cut(s) 926
MspCI CTTAAG 1 cut(s) 1042
MspI CCGG 2 cut(s) 72, 196
Mva1269I GAATGC 2 cut(s) 367, 865
MvnI CGCG 2 cut(s) 207, 974
MwoI GCNNNNNNNGC 3 cut(s) 175, 635, 923
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 7 cut(s) 208, 469, 499, 1085, 1124, 1129, 1146
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 3 cut(s) 541, 642, 1030
NlaIV GGNNCC 2 cut(s) 50, 471
NmuCI GTSAC 1 cut(s) 610
NruI TCGCGA 1 cut(s) 974
NspV TTCGAA 1 cut(s) 1141
OliI CACNNNNGTG 1 cut(s) 989
PaeR7I CTCGAG 1 cut(s) 870
PceI AGGCCT 1 cut(s) 275
PctI GAATGC 2 cut(s) 367, 865
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 6 cut(s) 324, 354, 590, 701, 1162, 1181
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 8 cut(s) 36, 203, 206, 514, 631, 823, 925, 928
PleI GAGTC 3 cut(s) 304, 763, 889
PpsI GAGTC 3 cut(s) 304, 763, 889
PshBI ATTAAT 2 cut(s) 104, 507
Psp124BI GAGCTC 2 cut(s) 43, 745
PspN4I GGNNCC 2 cut(s) 50, 471
PsuI RGATCY 2 cut(s) 469, 1124
PsyI GACNNNGTC 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 926
RruI TCGCGA 1 cut(s) 974
RseI CAYNNNNRTG 3 cut(s) 637, 989, 1107
SacI GAGCTC 2 cut(s) 43, 745
SaqAI TTAA 5 cut(s) 104, 335, 507, 1043, 1065
SatI GCNGC 8 cut(s) 35, 202, 205, 513, 630, 822, 924, 927
Sau3AI GATC 7 cut(s) 208, 469, 499, 1085, 1124, 1129, 1146
SchI GAGTC 3 cut(s) 304, 764, 889
SduI GDGCHC 3 cut(s) 43, 745, 986
SfaNI GCATC 4 cut(s) 641, 702, 946, 1099
Sfr274I CTCGAG 1 cut(s) 870
SfuI TTCGAA 1 cut(s) 1141
SlaI CTCGAG 1 cut(s) 870
SmiMI CAYNNNNRTG 3 cut(s) 637, 989, 1107
SmlI CTYRAG 5 cut(s) 752, 870, 899, 1035, 1042
SmoI CTYRAG 5 cut(s) 752, 870, 899, 1035, 1042
Sse9I AATT 7 cut(s) 19, 241, 336, 747, 813, 876, 936
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 6 cut(s) 205, 289, 636, 658, 692, 1204
SspI AATATT 1 cut(s) 787
SspMI CTAG 1 cut(s) 1002
SstI GAGCTC 2 cut(s) 43, 745
StuI AGGCCT 1 cut(s) 275
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 6 cut(s) 117, 165, 616, 991, 1106, 1136
TaiI ACGT 1 cut(s) 459
TaqI TCGA 4 cut(s) 119, 871, 1141, 1149
TasI AATT 7 cut(s) 19, 241, 336, 747, 813, 876, 936
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 6 cut(s) 324, 354, 590, 701, 1162, 1181
Tru1I TTAA 5 cut(s) 104, 335, 507, 1043, 1065
Tru9I TTAA 5 cut(s) 104, 335, 507, 1043, 1065
TscAI CASTG 3 cut(s) 378, 996, 1111
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 7 cut(s) 34, 201, 512, 629, 821, 923, 926
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 1 cut(s) 678
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 3 cut(s) 378, 996, 1111
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 243
Vha464I CTTAAG 1 cut(s) 1042
VspI ATTAAT 2 cut(s) 104, 507
XapI RAATTY 2 cut(s) 747, 876
XhoI CTCGAG 1 cut(s) 870
XspI CTAG 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.