Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Reverse (-)

12295816 .. 12300355

Gene Structure 4540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCAAATTCAATCGGACATAATAAGCTTTGTCCGTCTCTTGCGCGTACCACTCCCCCTCGCCGTCGTCTCCGTAATCAGCAGGAGCACTGGAGATGAAGTACCTGGAGGCAGCCGACAGGGTGTTAATATGTTTAGGGCGAGACATCTCATCCGTCCCACATCTGCCATCACCCTCGGGCATCCAAACCCTATTCTCTCCTCTCCGTCGTCTTCTTTGAATGCACACAATTTTCCCAGAGTTCGAAATTACATCAGAAATCGAGACAGTAACTATGTGAATAGGTGTCCCATGAACTTTGGCGTCCTTTTTGTGCCGGAAGCAGAAGCTTTCGTGGTCCAGCGGTGTGGAAAGTTCACCCAGATTCTACCCCCTGGAATCAATTTCTTGGTTCCCTTCGTAGATAAAGTTGCCTACGTGCATTCCTTGAAAGAGGAGGTCATAAGTGTTCCTGACCAGTCTGCTACCACCAAAGACAATGTCGAAATTAGGATTGATGCAGTGCTTTATGTCAAGATTGTGGATGCTTATAAGGCCTCATATGGGGGTGGCTCATATGGGGGTGGAAGTCCTATTGTTTTAGCTATTAACCATGCCCAGGCAGTCATGCGTGACGCAATCGGACTTATGACTCTTGACAGGACATTTGAGGGAAGAAACTACCTGAATGAGAAAATATTGGAGGCACTTAAAGGTAGTGAGAGCGATTGGGGCTTAAGTTGCCTTAGATATGAAATAAGGGATATAACTCCTCCAAGTGCGGTGAGGCAATCTATGGAGATGCAAGCTGATGCAGAACGCAAAAAAAGAGCTCTAATTCTTTCTTCCGAAGGAGATAGACAAAAGACCCTTAACAAGGCAGATGGAGACAAGACTAGAGATATTTTAGCAGCAGAAGCTAAAGCAGATGCAGAAGCGCAAGCCATCAGGGCTACAGCAGATGCAGAAGCTTACGCCATCCGTGCTAAAGCAGCTGCAACATCCGAAGGTATTGCTCTCATGTCAAAGAAACTCGAGGAAATTGGGGGTAAAGAGGCTGCCGCTTTGACTATTGCTGAGCAATACGTTAATGCCTTTGGAAATATCGCTAAAGAGGGCACAACTGTGTTGCTTCCATCTGCTGCTTCAGATCCTGCTAGCATGATCTCTCAGGCACTGAGTATCTACAAAAGATTGAACGACAACGGTTGCAGCAGAGGCAGCTGCGGTGAAGCAAAACCTGGAACGAGGTGGACAAGGAAGCCTGAGAATTGTGAGCTCATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

422

Amino Acids

45.84

Weight (kDa)

8.76

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	105 - 278	3.2e-29	SPFH domain / Band 7 family
Band_7_C	PF16200	335 - 393	2.6e-23	C-terminal region of band_7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AccII	CGCG	1 cut(s)	45
AciI	CCGC	4 cut(s)	343, 761, 1041, 1206
AclWI	GGATC	1 cut(s)	1124
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	1110
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	2 cut(s)	48, 102
AfiI	CCNNNNNNNGG	3 cut(s)	543, 598, 856
AflII	CTTAAG	1 cut(s)	715
AgsI	TTSAA	4 cut(s)	11, 220, 430, 1177
AjnI	CCWGG	4 cut(s)	103, 373, 597, 1219
AleI	CACNNNNGTG	1 cut(s)	1103
Alw21I	GWGCWC	3 cut(s)	89, 814, 1260
Alw26I	GTCTC	5 cut(s)	41, 73, 136, 258, 861
AlwI	GGATC	1 cut(s)	1124
AlwNI	CAGNNNCTG	2 cut(s)	1133, 1156
Ama87I	CYCGRG	2 cut(s)	176, 1013
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	9 cut(s)	111, 890, 971, 974, 1037, 1121, 1191, 1200, 1203
ApoI	RAATTY	1 cut(s)	6
ArsI	GACNNNNNNTTYG	4 cut(s)	465, 497, 629, 661
AspLEI	GCGC	2 cut(s)	45, 919
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	4 cut(s)	163, 349, 775, 1220
AsuII	TTCGAA	1 cut(s)	244
AsuNHI	GCTAGC	1 cut(s)	1136
AvaI	CYCGRG	2 cut(s)	176, 1013
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	1100
BanII	GRGCYC	2 cut(s)	814, 1260
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	3 cut(s)	89, 814, 1260
BbvI	GCAGC	9 cut(s)	123, 902, 961, 983, 1024, 1108, 1190, 1203, 1212
BccI	CCATC	5 cut(s)	176, 857, 932, 965, 1123
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	974, 1008
BciT130I	CCWGG	4 cut(s)	105, 375, 599, 1221
BcoDI	GTCTC	5 cut(s)	41, 73, 136, 258, 861
BfaI	CTAG	2 cut(s)	876, 1137
BfmI	CTRYAG	1 cut(s)	933
BfrI	CTTAAG	1 cut(s)	715
BglI	GCCNNNNNGGC	1 cut(s)	929
BlpI	GCTNAGC	1 cut(s)	1056
Bme1390I	CCNGG	4 cut(s)	105, 375, 599, 1221
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	2 cut(s)	176, 1013
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	4 cut(s)	105, 375, 599, 1221
BmsI	GCATC	7 cut(s)	190, 487, 514, 771, 781, 898, 931
BmtI	GCTAGC	1 cut(s)	1140
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	2 cut(s)	111, 126
Bpu1102I	GCTNAGC	1 cut(s)	1056
Bpu14I	TTCGAA	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	175, 373, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	543, 598, 856
Bse1I	ACTGG	2 cut(s)	94, 457
BseBI	CCWGG	4 cut(s)	105, 375, 599, 1221
BseDI	CCNNGG	3 cut(s)	175, 373, 597
BseGI	GGATG	5 cut(s)	150, 181, 529, 957, 980
BseLI	CCNNNNNNNGG	3 cut(s)	543, 598, 856
BseMII	CTCAG	4 cut(s)	1047, 1148, 1163, 1236
BseNI	ACTGG	2 cut(s)	94, 457
BseRI	GAGGAG	3 cut(s)	190, 449, 741
BseSI	GKGCMC	1 cut(s)	1100
BseXI	GCAGC	9 cut(s)	123, 902, 961, 983, 1024, 1108, 1190, 1203, 1212
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	536
BsiHKAI	GWGCWC	3 cut(s)	89, 814, 1260
BsiHKCI	CYCGRG	2 cut(s)	176, 1013
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	141, 273
BslI	CCNNNNNNNGG	3 cut(s)	543, 598, 856
BsmAI	GTCTC	5 cut(s)	41, 73, 136, 258, 861
BsmBI	CGTCTC	2 cut(s)	41, 73
BsmFI	GGGAC	2 cut(s)	141, 273
BsmI	GAATGC	2 cut(s)	226, 421
BsnI	GGCC	1 cut(s)	536
BsoBI	CYCGRG	2 cut(s)	176, 1013
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	4 cut(s)	89, 814, 1100, 1260
Bsp143I	GATC	2 cut(s)	1129, 1143
Bsp1720I	GCTNAGC	1 cut(s)	1056
BspACI	CCGC	4 cut(s)	343, 761, 1041, 1206
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	4 cut(s)	1048, 1149, 1162, 1237
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	393
BspOI	GCTAGC	1 cut(s)	1140
BspPI	GGATC	1 cut(s)	1124
BspT104I	TTCGAA	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	94, 457
BssECI	CCNNGG	3 cut(s)	175, 373, 597
BssMI	GATC	2 cut(s)	1129, 1143
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	4 cut(s)	105, 375, 599, 1221
Bst4CI	ACNGT	3 cut(s)	269, 1105, 1187
BstACI	GRCGYC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	715
BstBAI	YACGTR	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	3 cut(s)	786, 921, 1138
BstDEI	CTNAG	5 cut(s)	725, 1056, 1149, 1157, 1245
BstENI	CCTNNNNNAGG	1 cut(s)	854
BstF5I	GGATG	5 cut(s)	150, 181, 529, 957, 980
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	45, 919
BstKTI	GATC	2 cut(s)	1132, 1146
BstMAI	GTCTC	5 cut(s)	41, 73, 136, 258, 861
BstMBI	GATC	2 cut(s)	1129, 1143
BstMWI	GCNNNNNNNGC	9 cut(s)	533, 711, 720, 896, 929, 962, 971, 1197, 1200
BstNI	CCWGG	4 cut(s)	105, 375, 599, 1221
BstSCI	CCNGG	4 cut(s)	103, 373, 597, 1219
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	1 cut(s)	1100
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	9 cut(s)	123, 902, 961, 983, 1024, 1108, 1190, 1203, 1212
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	1129
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	1129
BsuRI	GGCC	1 cut(s)	536
BtsCI	GGATG	5 cut(s)	150, 181, 529, 957, 980
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	3 cut(s)	87, 507, 1154
Cac8I	GCNNGC	3 cut(s)	786, 921, 1138
CaiI	CAGNNNCTG	2 cut(s)	1133, 1156
CfoI	GCGC	2 cut(s)	45, 919
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	2 cut(s)	292, 623
Csp6I	GTAC	2 cut(s)	47, 101
CviAII	CATG	5 cut(s)	292, 593, 607, 1000, 1141
CviQI	GTAC	2 cut(s)	47, 101
DdeI	CTNAG	5 cut(s)	725, 1056, 1149, 1157, 1245
DpnI	GATC	2 cut(s)	1131, 1145
DpnII	GATC	2 cut(s)	1129, 1143
Ecl136II	GAGCTC	2 cut(s)	812, 1258
Eco147I	AGGCCT	1 cut(s)	536
Eco24I	GRGCYC	2 cut(s)	814, 1260
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	2 cut(s)	812, 1258
Eco57I	CTGAAG	1 cut(s)	1110
Eco88I	CYCGRG	2 cut(s)	176, 1013
EcoICRI	GAGCTC	2 cut(s)	812, 1258
EcoNI	CCTNNNNNAGG	1 cut(s)	854
EcoRII	CCWGG	4 cut(s)	103, 373, 597, 1219
EcoT38I	GRGCYC	2 cut(s)	814, 1260
Esp3I	CGTCTC	2 cut(s)	41, 73
FaeI	CATG	5 cut(s)	295, 596, 610, 1003, 1144
FaqI	GGGAC	2 cut(s)	141, 273
FatI	CATG	5 cut(s)	291, 592, 606, 999, 1140
FauNDI	CATATG	2 cut(s)	541, 556
FokI	GGATG	5 cut(s)	137, 168, 536, 944, 967
FriOI	GRGCYC	2 cut(s)	814, 1260
FspBI	CTAG	2 cut(s)	876, 1137
GlaI	GCGC	2 cut(s)	44, 918
GsuI	CTGGAG	2 cut(s)	111, 126
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	2 cut(s)	292, 623
HhaI	GCGC	2 cut(s)	45, 919
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	5 cut(s)	295, 596, 610, 1003, 1144
Hin6I	GCGC	2 cut(s)	43, 917
HinP1I	GCGC	2 cut(s)	43, 917
HindIII	AAGCTT	3 cut(s)	25, 327, 948
HinfI	GANTC	3 cut(s)	364, 378, 631
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	4 cut(s)	163, 349, 775, 1220
Hpy166II	GTNNAC	2 cut(s)	357, 1233
Hpy188I	TCNGA	6 cut(s)	16, 257, 623, 829, 985, 1129
Hpy188III	TCNNGA	4 cut(s)	263, 452, 514, 635
Hpy8I	GTNNAC	2 cut(s)	357, 1233
Hpy99I	CGWCG	2 cut(s)	68, 211
HpyAV	CCTTC	3 cut(s)	406, 824, 980
HpyCH4III	ACNGT	3 cut(s)	269, 1105, 1187
HpyCH4IV	ACGT	2 cut(s)	417, 1065
HpyF10VI	GCNNNNNNNGC	9 cut(s)	533, 711, 720, 896, 929, 962, 971, 1197, 1200
HpyF3I	CTNAG	5 cut(s)	725, 1056, 1149, 1157, 1245
HpySE526I	ACGT	2 cut(s)	417, 1065
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	5 cut(s)	295, 596, 610, 1003, 1144
HspAI	GCGC	2 cut(s)	43, 917
Kzo9I	GATC	2 cut(s)	1129, 1143
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	9 cut(s)	123, 902, 961, 983, 1024, 1108, 1190, 1203, 1212
LweI	GCATC	7 cut(s)	190, 487, 514, 771, 781, 898, 931
MaeI	CTAG	2 cut(s)	876, 1137
MaeII	ACGT	2 cut(s)	417, 1065
MaeIII	GTNAC	2 cut(s)	269, 611
MalI	GATC	2 cut(s)	1131, 1145
MboI	GATC	2 cut(s)	1129, 1143
MboII	GAAGA	3 cut(s)	204, 666, 816
MflI	RGATCY	1 cut(s)	1129
MhlI	GDGCHC	4 cut(s)	89, 814, 1100, 1260
MluCI	AATT	8 cut(s)	6, 229, 247, 382, 486, 816, 1020, 1249
MlyI	GAGTC	1 cut(s)	625
MseI	TTAA	7 cut(s)	126, 588, 690, 716, 852, 1068, 1267
MslI	CAYNNNNRTG	1 cut(s)	1103
MspA1I	CMGCKG	3 cut(s)	343, 974, 1203
MspCI	CTTAAG	1 cut(s)	715
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	4 cut(s)	105, 375, 599, 1221
Mva1269I	GAATGC	2 cut(s)	226, 421
MvaI	CCWGG	4 cut(s)	105, 375, 599, 1221
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	9 cut(s)	533, 711, 720, 896, 929, 962, 971, 1197, 1200
NdeI	CATATG	2 cut(s)	541, 556
NdeII	GATC	2 cut(s)	1129, 1143
NheI	GCTAGC	1 cut(s)	1136
NlaIII	CATG	5 cut(s)	295, 596, 610, 1003, 1144
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	1103
PaeR7I	CTCGAG	1 cut(s)	1013
PceI	AGGCCT	1 cut(s)	536
PctI	GAATGC	2 cut(s)	226, 421
PfeI	GAWTC	2 cut(s)	364, 378
PflFI	GACNNNGTC	1 cut(s)	479
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
Ppu21I	YACGTR	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	531
Psp124BI	GAGCTC	2 cut(s)	814, 1260
Psp6I	CCWGG	4 cut(s)	103, 373, 597, 1219
PspGI	CCWGG	4 cut(s)	103, 373, 597, 1219
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	337
PspXI	VCTCGAGB	1 cut(s)	1013
PstNI	CAGNNNCTG	2 cut(s)	1133, 1156
PsuI	RGATCY	1 cut(s)	1129
PsyI	GACNNNGTC	1 cut(s)	479
PvuII	CAGCTG	2 cut(s)	974, 1203
RsaI	GTAC	2 cut(s)	48, 102
RsaNI	GTAC	2 cut(s)	47, 101
RseI	CAYNNNNRTG	1 cut(s)	1103
SacI	GAGCTC	2 cut(s)	814, 1260
SaqAI	TTAA	7 cut(s)	126, 588, 690, 716, 852, 1068, 1267
Sau3AI	GATC	2 cut(s)	1129, 1143
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	4 cut(s)	105, 375, 599, 1221
SduI	GDGCHC	4 cut(s)	89, 814, 1100, 1260
SfaNI	GCATC	7 cut(s)	190, 487, 514, 771, 781, 898, 931
SfcI	CTRYAG	1 cut(s)	933
Sfr274I	CTCGAG	1 cut(s)	1013
SfuI	TTCGAA	1 cut(s)	244
SinI	GGWCC	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	1013
SmiMI	CAYNNNNRTG	1 cut(s)	1103
SmlI	CTYRAG	2 cut(s)	715, 1013
SmoI	CTYRAG	2 cut(s)	715, 1013
Sse9I	AATT	8 cut(s)	6, 229, 247, 382, 486, 816, 1020, 1249
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	4 cut(s)	343, 761, 1041, 1206
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	2 cut(s)	876, 1137
SstI	GAGCTC	2 cut(s)	814, 1260
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	4 cut(s)	103, 373, 597, 1219
TaaI	ACNGT	3 cut(s)	269, 1105, 1187
TaiI	ACGT	2 cut(s)	420, 1068
TaqI	TCGA	4 cut(s)	244, 262, 483, 1014
TasI	AATT	8 cut(s)	6, 229, 247, 382, 486, 816, 1020, 1249
TauI	GCSGC	1 cut(s)	1043
TfiI	GAWTC	2 cut(s)	364, 378
Tru1I	TTAA	7 cut(s)	126, 588, 690, 716, 852, 1068, 1267
Tru9I	TTAA	7 cut(s)	126, 588, 690, 716, 852, 1068, 1267
TscAI	CASTG	3 cut(s)	94, 507, 1161
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	9 cut(s)	111, 890, 971, 974, 1037, 1121, 1191, 1200, 1203
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	3 cut(s)	111, 308, 747
TspGWI	ACGGA	5 cut(s)	23, 61, 143, 195, 950
TspRI	CASTG	3 cut(s)	94, 507, 1161
Tth111I	GACNNNGTC	1 cut(s)	479
Vha464I	CTTAAG	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	854
XapI	RAATTY	1 cut(s)	6
XhoI	CTCGAG	1 cut(s)	1013
XspI	CTAG	2 cut(s)	876, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.