Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Reverse (-)

11974914 .. 11977629

Gene Structure 2716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG077800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTTTAGGGCGAGACATCTCATCCGTTCCACATCTGCCATCACCCTCGGGCATTCAAACCCTATTCTCTCCTCTCCATCGTCTTCTTTGCCTGCACACAATTTTCCCACAGTTCGAAATTACATCAGAAATCGAGACAGTAACTATGTGAATAGGTGTCCCATGAACTTTGGCGTCCTTTTTGTGCCGGAAGCGGAAGCTTTCGTGGTCCAGCGGTGTGGAAAGTTCACCCAGATTCTACCCCCAGGAATCAATTTCTTGGTTCCCTTCGTGGATAAAGTTGCCTACGTGCATTCCTTGAAAGAGGAGGTCATAAGTGTTCCTGACCAGTCTGCTACCACCAAAGACAATGTCGAAATTAGGATTGATGCAGTGCTTTATCTCAAGATTGTGGATGCTTATAAGGCCTCATATGGGGGTGGCTCATATGGGGGTGGAAGTCCTATTGTTTTAGCTATTAACCATGCCCAGGCAGTCATGCGTGACGCAATCGGACTTATGACTCTTGACAGGACATTTGAGGGAAGAAACTACCTGAATGAGAAAATATTGGAGGCACTTAAAAGTAGTGAGAGCGATTGGGGCTTAAGTTGCCTTAGATATGAAATAAGGGATATAACTCCTCCACGTGCGGTGAGGCAATCTATGGAGATGCAAGCTGATGCAGAACGCAAAAAAAGAGCTCTAATTCTTTCTTCCGAAGGAGATAGACAAAAGACCCTTAACAAGGCAGATGGAGACAAGACTAGAGATATTTTAGCAGCAGAAGCCAAAAAGAGAGCTGTGTGTTTAGTAGGAGAAGGAGAAGCGCAAGCCATCAAGGCTAAAGCAGATGCAGAAGCGCAAGCCATCAGGGCTACAGCGGATGCAGAAGCTTACGCCATCCGTGCTAAAGCAACTGCAACATCCGAAGGTATTGCTCTCATGTCAAAGAGACTCGAGGAAATTGGGGGTAAAGAGGCTGCCGCTTTGACTATTGCTGAGCAATACGTTAATGCCTTTGGAAATATCGCTAAAGAGGGCACAACTGTGTTGCTTCCATCTGCTGCTTCAGATCCCGCTAGCATGATCTCTCAGGCACTGAGTATCTACAAAAGATTGAGTGACAAACACTCCACTCATGACTTACGTAAAATCTGCGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

382

Amino Acids

41.72

Weight (kDa)

8.64

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	62 - 235	2.6e-29	SPFH domain / Band 7 family
Band_7_C	PF16200	310 - 368	3.7e-23	C-terminal region of band_7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AciI	CCGC	6 cut(s)	194, 214, 632, 863, 966, 1059
AclWI	GGATC	1 cut(s)	1049
AcuI	CTGAAG	1 cut(s)	1035
AcvI	CACGTG	1 cut(s)	629
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	3 cut(s)	414, 469, 727
AflII	CTTAAG	1 cut(s)	586
AgsI	TTSAA	2 cut(s)	57, 301
AjnI	CCWGG	2 cut(s)	244, 468
AleI	CACNNNNGTG	1 cut(s)	1028
AluBI	AGCT	6 cut(s)	200, 455, 659, 683, 782, 875
AluI	AGCT	6 cut(s)	200, 455, 659, 683, 782, 875
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	4 cut(s)	7, 129, 732, 928
AlwI	GGATC	1 cut(s)	1049
AlwNI	CAGNNNCTG	1 cut(s)	1081
Ama87I	CYCGRG	2 cut(s)	47, 938
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	761, 962, 1046
ArsI	GACNNNNNNTTYG	4 cut(s)	336, 368, 500, 532
AspLEI	GCGC	2 cut(s)	811, 844
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	34, 220, 646
AsuII	TTCGAA	1 cut(s)	115
AsuNHI	GCTAGC	1 cut(s)	1061
AvaI	CYCGRG	2 cut(s)	47, 938
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	1025
BanII	GRGCYC	1 cut(s)	685
BbrPI	CACGTG	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	3 cut(s)	773, 949, 1033
BccI	CCATC	7 cut(s)	47, 85, 728, 824, 857, 890, 1048
BcgI	CGANNNNNNTGC	2 cut(s)	899, 933
BciT130I	CCWGG	2 cut(s)	246, 470
BcoDI	GTCTC	4 cut(s)	7, 129, 732, 928
BfaI	CTAG	2 cut(s)	747, 1062
BfmI	CTRYAG	1 cut(s)	858
BfrI	CTTAAG	1 cut(s)	586
BglI	GCCNNNNNGGC	2 cut(s)	821, 854
BisI	GCNGC	4 cut(s)	762, 963, 966, 1047
BlpI	GCTNAGC	1 cut(s)	981
BlsI	GCNGC	4 cut(s)	763, 964, 967, 1048
Bme1390I	CCNGG	2 cut(s)	246, 470
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	2 cut(s)	47, 938
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	246, 470
BmsI	GCATC	6 cut(s)	358, 385, 642, 652, 823, 856
BmtI	GCTAGC	1 cut(s)	1065
BpiI	GAAGAC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	981
Bpu14I	TTCGAA	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	368
BsaAI	YACGTR	3 cut(s)	289, 629, 1130
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	46, 244, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	1097, 1127
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 469, 727
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	246, 470
BseDI	CCNNGG	3 cut(s)	46, 244, 468
BseGI	GGATG	5 cut(s)	21, 400, 871, 882, 905
BseLI	CCNNNNNNNGG	3 cut(s)	414, 469, 727
BseMII	CTCAG	3 cut(s)	972, 1073, 1088
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	3 cut(s)	61, 320, 612
BseSI	GKGCMC	1 cut(s)	1025
BseXI	GCAGC	3 cut(s)	773, 949, 1033
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	685
BsiHKCI	CYCGRG	2 cut(s)	47, 938
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	414, 469, 727
BsmAI	GTCTC	4 cut(s)	7, 129, 732, 928
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	2 cut(s)	52, 292
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	2 cut(s)	47, 938
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	685, 1025
Bsp143I	GATC	2 cut(s)	1054, 1068
Bsp1720I	GCTNAGC	1 cut(s)	981
BspACI	CCGC	6 cut(s)	194, 214, 632, 863, 966, 1059
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	3 cut(s)	973, 1074, 1087
BspHI	TCATGA	1 cut(s)	1120
BspLI	GGNNCC	1 cut(s)	264
BspOI	GCTAGC	1 cut(s)	1065
BspPI	GGATC	1 cut(s)	1049
BspT104I	TTCGAA	1 cut(s)	115
BspTI	CTTAAG	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	46, 244, 468
BssMI	GATC	2 cut(s)	1054, 1068
BssNI	GRCGYC	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	246, 470
Bst4CI	ACNGT	3 cut(s)	112, 140, 1030
Bst6I	CTCTTC	1 cut(s)	1137
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	586
BstBAI	YACGTR	3 cut(s)	289, 629, 1130
BstBI	TTCGAA	1 cut(s)	115
BstC8I	GCNNGC	5 cut(s)	93, 657, 813, 846, 1063
BstDEI	CTNAG	4 cut(s)	596, 981, 1074, 1082
BstENI	CCTNNNNNAGG	1 cut(s)	725
BstF5I	GGATG	5 cut(s)	21, 400, 871, 882, 905
BstHHI	GCGC	2 cut(s)	811, 844
BstKTI	GATC	2 cut(s)	1057, 1071
BstMAI	GTCTC	4 cut(s)	7, 129, 732, 928
BstMBI	GATC	2 cut(s)	1054, 1068
BstMWI	GCNNNNNNNGC	7 cut(s)	404, 582, 591, 767, 821, 854, 887
BstNI	CCWGG	2 cut(s)	246, 470
BstSCI	CCNGG	2 cut(s)	244, 468
BstSFI	CTRYAG	1 cut(s)	858
BstSLI	GKGCMC	1 cut(s)	1025
BstSNI	TACGTA	1 cut(s)	1130
BstV1I	GCAGC	3 cut(s)	773, 949, 1033
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	1054
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	1054
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	5 cut(s)	21, 400, 871, 882, 905
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 1079
Cac8I	GCNNGC	5 cut(s)	93, 657, 813, 846, 1063
CaiI	CAGNNNCTG	1 cut(s)	1081
CciI	TCATGA	1 cut(s)	1120
CfoI	GCGC	2 cut(s)	811, 844
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	2 cut(s)	163, 494
CviAII	CATG	6 cut(s)	163, 464, 478, 925, 1066, 1121
DdeI	CTNAG	4 cut(s)	596, 981, 1074, 1082
DpnI	GATC	2 cut(s)	1056, 1070
DpnII	GATC	2 cut(s)	1054, 1068
Eam1104I	CTCTTC	1 cut(s)	1137
EarI	CTCTTC	1 cut(s)	1137
Ecl136II	GAGCTC	1 cut(s)	683
Eco105I	TACGTA	1 cut(s)	1130
Eco147I	AGGCCT	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	1035
Eco72I	CACGTG	1 cut(s)	629
Eco88I	CYCGRG	2 cut(s)	47, 938
EcoICRI	GAGCTC	1 cut(s)	683
EcoNI	CCTNNNNNAGG	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	244, 468
EcoT38I	GRGCYC	1 cut(s)	685
FaeI	CATG	6 cut(s)	166, 467, 481, 928, 1069, 1124
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	6 cut(s)	162, 463, 477, 924, 1065, 1120
FauI	CCCGC	1 cut(s)	1066
FauNDI	CATATG	2 cut(s)	412, 427
Fnu4HI	GCNGC	4 cut(s)	762, 963, 966, 1047
FokI	GGATG	5 cut(s)	8, 407, 869, 878, 892
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	4 cut(s)	762, 963, 966, 1047
FspBI	CTAG	2 cut(s)	747, 1062
GlaI	GCGC	2 cut(s)	810, 843
GluI	GCNGC	4 cut(s)	762, 963, 966, 1047
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	2 cut(s)	163, 494
HhaI	GCGC	2 cut(s)	811, 844
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	6 cut(s)	166, 467, 481, 928, 1069, 1124
Hin6I	GCGC	2 cut(s)	809, 842
HinP1I	GCGC	2 cut(s)	809, 842
HindIII	AAGCTT	2 cut(s)	198, 873
HinfI	GANTC	4 cut(s)	235, 249, 502, 936
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	34, 220, 646
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	5 cut(s)	128, 494, 700, 910, 1054
Hpy188III	TCNNGA	5 cut(s)	134, 323, 385, 506, 1121
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	4 cut(s)	277, 695, 794, 905
HpyCH4III	ACNGT	3 cut(s)	112, 140, 1030
HpyCH4IV	ACGT	4 cut(s)	288, 628, 990, 1129
HpyCH4V	TGCA	8 cut(s)	95, 292, 371, 655, 665, 836, 869, 902
HpyF10VI	GCNNNNNNNGC	7 cut(s)	404, 582, 591, 767, 821, 854, 887
HpyF3I	CTNAG	4 cut(s)	596, 981, 1074, 1082
HpySE526I	ACGT	4 cut(s)	288, 628, 990, 1129
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	6 cut(s)	166, 467, 481, 928, 1069, 1124
HspAI	GCGC	2 cut(s)	809, 842
Kzo9I	GATC	2 cut(s)	1054, 1068
Lsp1109I	GCAGC	3 cut(s)	773, 949, 1033
LweI	GCATC	6 cut(s)	358, 385, 642, 652, 823, 856
MaeI	CTAG	2 cut(s)	747, 1062
MaeII	ACGT	4 cut(s)	288, 628, 990, 1129
MaeIII	GTNAC	3 cut(s)	140, 482, 1103
MalI	GATC	2 cut(s)	1056, 1070
MboI	GATC	2 cut(s)	1054, 1068
MboII	GAAGA	3 cut(s)	75, 537, 687
MflI	RGATCY	1 cut(s)	1054
MhlI	GDGCHC	2 cut(s)	685, 1025
MluCI	AATT	6 cut(s)	100, 118, 253, 357, 687, 945
MlyI	GAGTC	2 cut(s)	496, 930
MseI	TTAA	5 cut(s)	459, 561, 587, 723, 993
MslI	CAYNNNNRTG	1 cut(s)	1028
MspA1I	CMGCKG	2 cut(s)	214, 863
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	246, 470
Mva1269I	GAATGC	2 cut(s)	52, 292
MvaI	CCWGG	2 cut(s)	246, 470
MwoI	GCNNNNNNNGC	7 cut(s)	404, 582, 591, 767, 821, 854, 887
NdeI	CATATG	2 cut(s)	412, 427
NdeII	GATC	2 cut(s)	1054, 1068
NheI	GCTAGC	1 cut(s)	1061
NlaIII	CATG	6 cut(s)	166, 467, 481, 928, 1069, 1124
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	2 cut(s)	482, 1103
NspV	TTCGAA	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	1028
PaeR7I	CTCGAG	1 cut(s)	938
PagI	TCATGA	1 cut(s)	1120
PceI	AGGCCT	1 cut(s)	407
PctI	GAATGC	2 cut(s)	52, 292
PfeI	GAWTC	2 cut(s)	235, 249
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	763, 964, 967, 1048
PleI	GAGTC	2 cut(s)	496, 930
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
PpsI	GAGTC	2 cut(s)	496, 930
Ppu21I	YACGTR	3 cut(s)	289, 629, 1130
PsiI	TTATAA	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	685
Psp6I	CCWGG	2 cut(s)	244, 468
PspCI	CACGTG	1 cut(s)	629
PspGI	CCWGG	2 cut(s)	244, 468
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	938
PstNI	CAGNNNCTG	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	1054
PsyI	GACNNNGTC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	1028
SacI	GAGCTC	1 cut(s)	685
SaqAI	TTAA	5 cut(s)	459, 561, 587, 723, 993
SatI	GCNGC	4 cut(s)	762, 963, 966, 1047
Sau3AI	GATC	2 cut(s)	1054, 1068
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	496, 930
ScrFI	CCNGG	2 cut(s)	246, 470
SduI	GDGCHC	2 cut(s)	685, 1025
SfaNI	GCATC	6 cut(s)	358, 385, 642, 652, 823, 856
SfcI	CTRYAG	1 cut(s)	858
Sfr274I	CTCGAG	1 cut(s)	938
SfuI	TTCGAA	1 cut(s)	115
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	938
SmiMI	CAYNNNNRTG	1 cut(s)	1028
SmlI	CTYRAG	3 cut(s)	383, 586, 938
SmoI	CTYRAG	3 cut(s)	383, 586, 938
SnaBI	TACGTA	1 cut(s)	1130
Sse9I	AATT	6 cut(s)	100, 118, 253, 357, 687, 945
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	6 cut(s)	194, 214, 632, 863, 966, 1059
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	2 cut(s)	747, 1062
SstI	GAGCTC	1 cut(s)	685
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	244, 468
TaaI	ACNGT	3 cut(s)	112, 140, 1030
TaiI	ACGT	4 cut(s)	291, 631, 993, 1132
TaqI	TCGA	4 cut(s)	115, 133, 354, 939
TasI	AATT	6 cut(s)	100, 118, 253, 357, 687, 945
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	2 cut(s)	235, 249
Tru1I	TTAA	5 cut(s)	459, 561, 587, 723, 993
Tru9I	TTAA	5 cut(s)	459, 561, 587, 723, 993
TscAI	CASTG	2 cut(s)	378, 1086
TseFI	GTSAC	2 cut(s)	482, 1103
TseI	GCWGC	3 cut(s)	761, 962, 1046
Tsp45I	GTSAC	2 cut(s)	482, 1103
TspDTI	ATGAA	2 cut(s)	179, 618
TspGWI	ACGGA	2 cut(s)	14, 875
TspRI	CASTG	2 cut(s)	378, 1086
Tth111I	GACNNNGTC	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	725
XhoI	CTCGAG	1 cut(s)	938
XspI	CTAG	2 cut(s)	747, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.