FvH4_7g33180

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004436
Physical Location & Seq
Forward (+)
23674550 .. 23675173
624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33180.t1

Sequence Viewer

Length: 450 bp
ATGCCGGGAGAGGAAGTGACTTCATGCTGGGATGAGGTGATACCTTTTGCTTATGTTCAATTTCAATTCTGGGTTTTATCTGAGTTCGTATTCCCTCAGATTTCGGCCACCGATTCTGTTTTGGGTTTTGTTTTCTTTTCTGCTGCTGGTTTGAAAGTTGCTGAGCAGTATGTTATGGCTTTTGGAAATGTCGCCAAACAGAGCACAACACTTTTACTTCCTAATGATGCTACTGGTCTCTCCTCCCAGATTTCTCAAGCCATGTTGCTTTACAAAAGGTTGGGTGGGAAATCGACCACTGGATCAACTGGAGGCTTTGAGGCCGTTAATCCCTCGGAAAAATCTCAGAGTGCCACTAAAGTGATTGAGGATGAAACAGCCAGTGAAGAGAAGGCTTCAAAGTTTTCCCTTCAAAACCAGCCTAGGTTTTCTCTTCAAAACAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

150

Amino Acids

16.24

Weight (kDa)

4.81

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7_C PF16200 47 - 94 4.2e-15 C-terminal region of band_7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 105
AgsI TTSAA 6 cut(s) 59, 65, 154, 399, 413, 437
AleI CACNNNNGTG 1 cut(s) 359
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 310
AoxI GGCC 2 cut(s) 105, 321
ApeKI GCWGC 1 cut(s) 143
AspA2I CCTAGG 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 49
AvrII CCTAGG 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 308
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 423
BisI GCNGC 1 cut(s) 144
BlnI CCTAGG 1 cut(s) 422
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 333, 422
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 4 cut(s) 238, 304, 313, 381
BseDI CCNNGG 2 cut(s) 333, 422
BseGI GGATG 2 cut(s) 37, 376
BseMII CTCAG 4 cut(s) 72, 110, 153, 359
BseNI ACTGG 4 cut(s) 238, 304, 313, 381
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 27
BshFI GGCC 2 cut(s) 107, 323
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 2 cut(s) 107, 323
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 302
Bsp1720I GCTNAGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 107, 323
BspCNI CTCAG 4 cut(s) 73, 109, 154, 358
BspPI GGATC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 242
BsrI ACTGG 4 cut(s) 238, 304, 313, 381
BssECI CCNNGG 2 cut(s) 333, 422
BssMI GATC 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 422
Bst6I CTCTTC 2 cut(s) 381, 438
BstDEI CTNAG 4 cut(s) 81, 96, 162, 345
BstF5I GGATG 2 cut(s) 37, 376
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 4
BstV1I GCAGC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 107, 323
BtsCI GGATG 2 cut(s) 37, 376
BtsIMutI CAGTG 2 cut(s) 297, 388
CviAII CATG 2 cut(s) 24, 262
CviJI RGCY 8 cut(s) 107, 179, 260, 315, 323, 380, 395, 421
CviKI_1 RGCY 8 cut(s) 107, 179, 260, 315, 323, 380, 395, 421
DdeI CTNAG 4 cut(s) 81, 96, 162, 345
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 381, 438
EarI CTCTTC 2 cut(s) 381, 438
Eco130I CCWWGG 1 cut(s) 422
Eco31I GGTCTC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 2 cut(s) 27, 265
FaiI YATR 5 cut(s) 25, 54, 171, 176, 263
FatI CATG 2 cut(s) 23, 261
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 2 cut(s) 44, 383
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 2 cut(s) 107, 323
HapII CCGG 1 cut(s) 5
Hin1II CATG 2 cut(s) 27, 265
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 82, 99, 337, 348
HpyAV CCTTC 2 cut(s) 385, 419
HpyF3I CTNAG 4 cut(s) 81, 96, 162, 345
Hsp92II CATG 2 cut(s) 27, 265
Kzo9I GATC 1 cut(s) 302
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MboII GAAGA 2 cut(s) 398, 425
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 2 cut(s) 59, 65
MnlI CCTC 8 cut(s) 4, 28, 105, 253, 305, 313, 343, 361
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
NciI CCSGG 1 cut(s) 6
NdeII GATC 1 cut(s) 302
NlaIII CATG 2 cut(s) 27, 265
NmuCI GTSAC 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 359
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 1 cut(s) 206
SetI ASST 4 cut(s) 39, 46, 281, 428
SfaNI GCATC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 2 cut(s) 59, 65
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 422
TaqI TCGA 1 cut(s) 293
TasI AATT 2 cut(s) 59, 65
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 2 cut(s) 304, 388
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 12, 387
TspRI CASTG 2 cut(s) 304, 388
XmaJI CCTAGG 1 cut(s) 422
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.