Rorug05G0565400

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004436
Physical Location & Seq
Reverse (-)
75785048 .. 75786116
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0565400.1

Sequence Viewer

Length: 516 bp
ATGGATCAAAATTTTTCAGATTCATCTTCAAATGCTGCAGATGAGGAATTTTGGGATCTTGCCAATTCATCATCAGACGAAGAATTGATGAATCTGGAGATTGCTGCTCTACAAGAGAAGGGAAGAAGAAGACGCCGGGGCTCAATTCCTGGTTGCATATATAAAGATAGACAACGATTGCAAGGTCAGGAAACACTCTACAATGATTATTTTGCTGAAAATCTTGTTCATGAAGAAGTTATTTCCCTTAGAGGGTTGGTTCTTGCTAAGATAGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCTCAACATGAGGAAGAAATGGCGCTGCTTGCCAGAGAACGCTCTCGGGCTGAGTTCCAAGACTGGGTGAAAAAAGAAGAAGAGTTCCACTTTGATCAAAGCAAAATGATGTCAGAGATCAGATTGCTTGAAGGGCGTATCAAGCCAATTGATGTACTTTCCAAGCATCTTGATGGCTCAGATGTTTATTATCTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

171

Amino Acids

20.13

Weight (kDa)

5.19

Isoelectric Point (pI)

70.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 117 - 163 2.5e-14 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 63
AcsI RAATTY 2 cut(s) 10, 47
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 2 cut(s) 252, 379
AgsI TTSAA 3 cut(s) 30, 311, 446
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw21I GWGCWC 1 cut(s) 307
AlwI GGATC 2 cut(s) 12, 63
Ama87I CYCGRG 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 35, 104, 340
ApoI RAATTY 2 cut(s) 10, 47
AspLEI GCGC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 360
BanII GRGCYC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 3 cut(s) 22, 91, 327
BccI CCATC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 150
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 341
BisI GCNGC 3 cut(s) 36, 105, 341
BlsI GCNGC 3 cut(s) 37, 106, 342
Bme1390I CCNGG 2 cut(s) 137, 150
BmeT110I CYCGRG 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 137, 150
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 379
Bse1I ACTGG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 252, 379
BseMII CTCAG 2 cut(s) 357, 507
BseNI ACTGG 1 cut(s) 383
BseXI GCAGC 3 cut(s) 22, 91, 327
BsiHKAI GWGCWC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 252, 379
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 143, 307
Bsp143I GATC 4 cut(s) 4, 55, 409, 432
BspCNI CTCAG 2 cut(s) 358, 506
BspHI TCATGA 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 2 cut(s) 12, 63
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 4 cut(s) 4, 55, 409, 432
BssNI GRCGYC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 281, 390
BstACI GRCGYC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 4 cut(s) 248, 267, 366, 493
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 4 cut(s) 7, 58, 412, 435
BstMBI GATC 4 cut(s) 4, 55, 409, 432
BstMWI GCNNNNNNNGC 3 cut(s) 344, 448, 457
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 135, 148
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 22, 91, 327
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 340
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 470
CviAII CATG 2 cut(s) 230, 323
CviJI RGCY 5 cut(s) 141, 317, 365, 460, 492
CviKI_1 RGCY 5 cut(s) 141, 317, 365, 460, 492
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 4 cut(s) 248, 267, 366, 493
DpnI GATC 4 cut(s) 6, 57, 411, 434
DpnII GATC 4 cut(s) 4, 55, 409, 432
Eam1104I CTCTTC 2 cut(s) 281, 390
EarI CTCTTC 2 cut(s) 281, 390
Eco24I GRGCYC 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 2 cut(s) 233, 326
FaiI YATR 6 cut(s) 158, 160, 162, 231, 324, 511
FatI CATG 2 cut(s) 229, 322
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 36, 105, 341
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 36, 105, 341
GlaI GCGC 1 cut(s) 339
GluI GCNGC 3 cut(s) 36, 105, 341
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 341
HapII CCGG 1 cut(s) 136
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 2 cut(s) 233, 326
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 2 cut(s) 20, 91
HpaII CCGG 1 cut(s) 136
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 5 cut(s) 19, 76, 430, 437, 496
Hpy188III TCNNGA 4 cut(s) 95, 188, 230, 485
HpyAV CCTTC 3 cut(s) 112, 285, 440
HpyCH4V TGCA 3 cut(s) 38, 156, 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 448, 457
HpyF3I CTNAG 4 cut(s) 248, 267, 366, 493
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 2 cut(s) 233, 326
HspAI GCGC 1 cut(s) 338
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 4 cut(s) 4, 55, 409, 432
LpnPI CCDG 7 cut(s) 80, 135, 149, 162, 173, 361, 364
Lsp1109I GCAGC 3 cut(s) 22, 91, 327
LweI GCATC 1 cut(s) 490
MalI GATC 4 cut(s) 6, 57, 411, 434
MboI GATC 4 cut(s) 4, 55, 409, 432
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 143, 307
MluCI AATT 6 cut(s) 10, 47, 64, 83, 144, 462
MnlI CCTC 4 cut(s) 37, 245, 289, 319
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 2 cut(s) 137, 150
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 344, 448, 457
NciI CCSGG 1 cut(s) 137
NdeII GATC 4 cut(s) 4, 55, 409, 432
NlaIII CATG 2 cut(s) 233, 326
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 2 cut(s) 20, 91
PkrI GCNGC 3 cut(s) 37, 106, 342
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 3 cut(s) 36, 105, 341
Sau3AI GATC 4 cut(s) 4, 55, 409, 432
ScrFI CCNGG 2 cut(s) 137, 150
SduI GDGCHC 2 cut(s) 143, 307
SetI ASST 3 cut(s) 187, 282, 319
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 486
Sse9I AATT 6 cut(s) 10, 47, 64, 83, 144, 462
StyD4I CCNGG 2 cut(s) 135, 148
TasI AATT 6 cut(s) 10, 47, 64, 83, 144, 462
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 2 cut(s) 20, 91
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseI GCWGC 3 cut(s) 35, 104, 340
TspDTI ATGAA 5 cut(s) 12, 57, 104, 218, 246
XapI RAATTY 2 cut(s) 10, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.