FvH4_2g05761

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004436
Physical Location & Seq
Reverse (-)
4722874 .. 4723674
801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05761.t1

Sequence Viewer

Length: 564 bp
ATGTTTAGGGCAAGAAATCTCATCCGATCCACATCTGCTATCACCCTCGGGAATTCAAACCCTATTATCTCCTCTCCATTGTCTTCTAACTTGCCTGCACACAATTTCCCTAGAGTTCGAAGTTACTTCAGAGATCGAAACAAAAACTATGTGAATCGGTGTCCGATTAACTTCGGGGTCCTTTTTGTGCCGGAAGCTGAAGCTTTCGTGGTGCAGCGGTGTGGAAAGTTCACGAAGGTTCTACCCCCTGGAGTCAATTTCTTGGTTCCCTTCTTAGACAAAGTTGCTTACGTGCATAACTTGAAAGAGGAGGTCATAAATGTTCCTAACCAGTCCGCTACCACCAAAGACAATGTAGAGATCACTATTGATGCTGTGCTCTATCTCAAGATTGTTGATCCTTATAAGGCTTCATATGGGGGCGGCGCATATGGGGGTGGAAGTCCTTTAGTTTTAGCTATTAACCATGCTCAGGCTGCCATGCGTAGCGCCATCGGACTTATGACTCTTGACAGGACATTTGAGGGAAGAAACTACCTGAATGAGAAAATATTGATAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

188

Amino Acids

20.69

Weight (kDa)

9.66

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 63 - 184 6.7e-20 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AciI CCGC 3 cut(s) 217, 336, 423
AclWI GGATC 2 cut(s) 21, 392
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 112, 219
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 2 cut(s) 57, 304
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 4 cut(s) 197, 203, 458, 561
AluI AGCT 4 cut(s) 197, 203, 458, 561
Alw21I GWGCWC 1 cut(s) 381
AlwI GGATC 2 cut(s) 21, 392
Ama87I CYCGRG 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 214, 476
ApoI RAATTY 1 cut(s) 52
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AspLEI GCGC 2 cut(s) 428, 491
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 226, 463
BccI CCATC 1 cut(s) 500
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 2 cut(s) 111, 562
BfoI RGCGCY 1 cut(s) 492
BisI GCNGC 3 cut(s) 215, 424, 477
BlsI GCNGC 3 cut(s) 216, 425, 478
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 179, 267
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 371
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 46, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse1I ACTGG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 31
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 46, 247
BseGI GGATG 1 cut(s) 21
BseJI GATNNNNATC 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 2 cut(s) 61, 323
BseXI GCAGC 2 cut(s) 226, 463
BsgI GTGCAG 2 cut(s) 81, 233
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 4 cut(s) 26, 133, 360, 397
BspACI CCGC 3 cut(s) 217, 336, 423
BspCNI CTCAG 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 179, 267
BspPI GGATC 2 cut(s) 21, 392
BspT104I TTCGAA 1 cut(s) 118
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 46, 247
BssMI GATC 4 cut(s) 26, 133, 360, 397
Bst2UI CCWGG 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 274, 471
BstF5I GGATG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 2 cut(s) 428, 491
BstKTI GATC 4 cut(s) 29, 136, 363, 400
BstMBI GATC 4 cut(s) 26, 133, 360, 397
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 226, 463
BstV2I GAAGAC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 2 cut(s) 428, 491
Cfr13I GGNCC 1 cut(s) 178
CviAII CATG 2 cut(s) 467, 481
CviJI RGCY 6 cut(s) 197, 203, 410, 458, 476, 561
CviKI_1 RGCY 6 cut(s) 197, 203, 410, 458, 476, 561
DdeI CTNAG 2 cut(s) 274, 471
DpnI GATC 4 cut(s) 28, 135, 362, 399
DpnII GATC 4 cut(s) 26, 133, 360, 397
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 112, 219
Eco88I CYCGRG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 470, 484
FatI CATG 2 cut(s) 466, 480
FauNDI CATATG 2 cut(s) 415, 430
Fnu4HI GCNGC 3 cut(s) 215, 424, 477
FokI GGATG 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 215, 424, 477
FspBI CTAG 2 cut(s) 111, 562
GlaI GCGC 2 cut(s) 427, 490
GluI GCNGC 3 cut(s) 215, 424, 477
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 492
HapII CCGG 1 cut(s) 191
HhaI GCGC 2 cut(s) 428, 491
Hin1II CATG 2 cut(s) 470, 484
Hin6I GCGC 2 cut(s) 426, 489
HinP1I GCGC 2 cut(s) 426, 489
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 3 cut(s) 154, 252, 505
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 4 cut(s) 26, 131, 165, 497
Hpy188III TCNNGA 4 cut(s) 49, 232, 388, 509
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 229, 280
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 98, 214, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 2 cut(s) 274, 471
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 470, 484
HspAI GCGC 2 cut(s) 426, 489
Kzo9I GATC 4 cut(s) 26, 133, 360, 397
LpnPI CCDG 8 cut(s) 108, 204, 234, 261, 344, 458, 499, 551
Lsp1109I GCAGC 2 cut(s) 226, 463
LweI GCATC 1 cut(s) 361
MaeI CTAG 2 cut(s) 111, 562
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 122
MalI GATC 4 cut(s) 28, 135, 362, 399
MboI GATC 4 cut(s) 26, 133, 360, 397
MboII GAAGA 2 cut(s) 75, 540
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 3 cut(s) 52, 103, 256
MlyI GAGTC 2 cut(s) 261, 499
MnlI CCTC 5 cut(s) 56, 82, 301, 304, 517
MseI TTAA 2 cut(s) 168, 462
MspA1I CMGCKG 1 cut(s) 217
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeI CATATG 2 cut(s) 415, 430
NdeII GATC 4 cut(s) 26, 133, 360, 397
NlaIII CATG 2 cut(s) 470, 484
NlaIV GGNNCC 2 cut(s) 179, 267
NspV TTCGAA 1 cut(s) 118
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 3 cut(s) 216, 425, 478
PleI GAGTC 2 cut(s) 260, 499
PpsI GAGTC 2 cut(s) 260, 499
Ppu21I YACGTR 1 cut(s) 292
PpuMI RGGWCCY 1 cut(s) 178
PsiI TTATAA 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 179, 267
PspPI GGNCC 1 cut(s) 178
PspPPI RGGWCCY 1 cut(s) 178
SaqAI TTAA 2 cut(s) 168, 462
SatI GCNGC 3 cut(s) 215, 424, 477
Sau3AI GATC 4 cut(s) 26, 133, 360, 397
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 2 cut(s) 261, 499
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 381
SetI ASST 8 cut(s) 199, 205, 240, 294, 315, 460, 540, 563
SfaNI GCATC 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 3 cut(s) 52, 103, 256
SsiI CCGC 3 cut(s) 217, 336, 423
SspI AATATT 1 cut(s) 552
SspMI CTAG 2 cut(s) 111, 562
StyD4I CCNGG 1 cut(s) 247
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 118, 136
TasI AATT 3 cut(s) 52, 103, 256
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 168, 462
Tru9I TTAA 2 cut(s) 168, 462
TseI GCWGC 2 cut(s) 214, 476
TspDTI ATGAA 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 1 cut(s) 52
XspI CTAG 2 cut(s) 111, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.