Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Forward (+)

29874711 .. 29878118

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G321200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAATATGTTTAAGCTCAATTCCCTCAACTCGTTGAGAGCTCTAAGGCATCTCCACCATTCCCAATCTGCCGGTGTAAGAGCCCTCACCACCTGTTCGTCATTAATCCTCAAACAGTCGAACCCACTTCTTTCCCCTCCATCTTCCTCCCCGTTTGCCTCCTCACACAATCTGCTCGCAGTTCGGAACTACCGAAGCAGTCGCGATCTCAGAAACTATGAGATTACGCCTCCGACGAATTTTGGCATTCGGATTGTACCTGAGAAGAAGGCCTTTGTGATTGAGCGGTTTGGAAAGTACGTCAGGACTCTGGATTCTGGTATCCATTTCTTGATTCCCTTTGTGGATAGAATCGCTTATGTGCATTCCTTGAAAGAAGAGGTCATCAATGTTCCTGACCAGTCCGCTATCACCAAAGACAATGTCGCCCTTATGATTGATGGTGTGCTTTACATCAGGATTATGGATCCTATGCTGGCCTCCTATGGCGTTGACAATCCTATTAATGCAGCTATTCAGCTTGCACAGACTACTATGCGTATTGCAATTGGGAAAATGACTCTTGACAAGACATTTGAGGAAAGAGAATCCCTCAATGATGAGATAGTGACAGGGCTCAACAAGGCTGCTACAGCATGGGGCTTGGAGTGCCTCCGATATGAAATAAAGGACATAACTCCTCCTCGTGCGGTGAGGGAAGCTATGGAGATGCAAGCAGAAGCAGAACGCAAAAAGAGAGCTCAAATTCTCGAGTCTGAAGGAGAAAGACAGGCAAACATAAACATTGCAGACGGAAAGAAGAGTGCTATAATATTAGCAGCAGAAGGAGAAGCACAGTCCATCCTTGCTAAAGCAAATGCAACATCTCGAGGAATTACCCTTGTGTCAAAGACTCTCAAGGAAAGTGGCGGTGCAGAGGCAGCTGCCTTGAAAATTGCTGAGCAGTATGTCGAAGCCTTTGGTAATATTGCCAAACAGGGCACAACAGTGTTGCTTCCTAGTGCTTCAAATAATCCTGCTGGCATGATTTCTCAAGCACTAACAATCTACAAAAGCTTGGTTAATGATCCTTCCACTATTGCAACAATTGGAGGCACGAAAGGTGATACTTCCTCAGAAGGATCTGAGCGTGGGATTCGACTGATTGAGGAAACAGTTGATGAACATAATGATGCAAAGGAACCAGGGTTTTCGCTTCAAAACCGCAAGAAAGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

407

Amino Acids

44.29

Weight (kDa)

8.64

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AccII	CGCG	1 cut(s)	204
AciI	CCGC	5 cut(s)	286, 405, 689, 909, 1204
AclWI	GGATC	4 cut(s)	461, 474, 1061, 1129
AcsI	RAATTY	2 cut(s)	238, 744
AcuI	CTGAAG	1 cut(s)	777
AfaI	GTAC	2 cut(s)	258, 299
AgsI	TTSAA	4 cut(s)	373, 931, 1008, 1199
AjnI	CCWGG	1 cut(s)	1183
AleI	CACNNNNGTG	1 cut(s)	986
AluBI	AGCT	8 cut(s)	16, 41, 512, 520, 701, 740, 923, 1056
AluI	AGCT	8 cut(s)	16, 41, 512, 520, 701, 740, 923, 1056
Alw21I	GWGCWC	2 cut(s)	43, 742
AlwI	GGATC	4 cut(s)	461, 474, 1061, 1129
Ama87I	CYCGRG	2 cut(s)	749, 867
AoxI	GGCC	2 cut(s)	270, 477
ApeKI	GCWGC	5 cut(s)	509, 626, 818, 920, 923
ApoI	RAATTY	2 cut(s)	238, 744
ArsI	GACNNNNNNTTYG	4 cut(s)	408, 440, 557, 589
AseI	ATTAAT	2 cut(s)	104, 504
AsuHPI	GGTGA	4 cut(s)	79, 403, 703, 1115
AvaI	CYCGRG	2 cut(s)	749, 867
BaeGI	GKGCMC	1 cut(s)	983
BamHI	GGATCC	1 cut(s)	466
BanII	GRGCYC	4 cut(s)	43, 85, 618, 742
BauI	CACGAG	1 cut(s)	684
Bbv12I	GWGCWC	2 cut(s)	43, 742
BbvI	GCAGC	5 cut(s)	521, 613, 830, 910, 932
BccI	CCATC	3 cut(s)	148, 434, 848
BciT130I	CCWGG	1 cut(s)	1185
BciVI	GTATCC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	999
BfmI	CTRYAG	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	5 cut(s)	510, 627, 819, 921, 924
BlpI	GCTNAGC	1 cut(s)	939
BlsI	GCNGC	5 cut(s)	511, 628, 820, 922, 925
Bme1390I	CCNGG	1 cut(s)	1185
BmeT110I	CYCGRG	2 cut(s)	749, 867
BmiI	GGNNCC	2 cut(s)	468, 1182
BmrFI	CCNGG	1 cut(s)	1185
BmsI	GCATC	3 cut(s)	58, 699, 1162
BplI	GAGNNNNNCTC	2 cut(s)	576, 608
Bpu1102I	GCTNAGC	1 cut(s)	939
BpuEI	CTTGAG	2 cut(s)	881, 1017
BsaJI	CCNNGG	1 cut(s)	1184
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	1185
BseDI	CCNNGG	1 cut(s)	1184
BseGI	GGATG	1 cut(s)	840
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	5 cut(s)	223, 252, 930, 1116, 1128
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	3 cut(s)	151, 669, 672
BseSI	GKGCMC	1 cut(s)	983
BseXI	GCAGC	5 cut(s)	521, 613, 830, 910, 932
BsgI	GTGCAG	1 cut(s)	933
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	272, 479
BsiHKAI	GWGCWC	2 cut(s)	43, 742
BsiHKCI	CYCGRG	2 cut(s)	749, 867
BsiSI	CCGG	1 cut(s)	72
BsmI	GAATGC	2 cut(s)	246, 364
BsnI	GGCC	2 cut(s)	272, 479
BsoBI	CYCGRG	2 cut(s)	749, 867
Bsp1286I	GDGCHC	5 cut(s)	43, 85, 618, 742, 983
Bsp143I	GATC	4 cut(s)	205, 466, 1066, 1121
Bsp1720I	GCTNAGC	1 cut(s)	939
Bsp68I	TCGCGA	1 cut(s)	204
BspACI	CCGC	5 cut(s)	286, 405, 689, 909, 1204
BspANI	GGCC	2 cut(s)	272, 479
BspCNI	CTCAG	5 cut(s)	222, 253, 931, 1117, 1127
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	468, 1182
BspPI	GGATC	4 cut(s)	461, 474, 1061, 1129
BsrBI	CCGCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	1184
BssMI	GATC	4 cut(s)	205, 466, 1066, 1121
BssSI	CACGAG	1 cut(s)	684
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	1185
Bst4CI	ACNGT	4 cut(s)	117, 837, 988, 1156
Bst6I	CTCTTC	2 cut(s)	372, 794
BstC8I	GCNNGC	5 cut(s)	177, 477, 522, 714, 1021
BstDEI	CTNAG	6 cut(s)	44, 209, 261, 939, 1114, 1125
BstF5I	GGATG	1 cut(s)	840
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	4 cut(s)	208, 469, 1069, 1124
BstMBI	GATC	4 cut(s)	205, 466, 1066, 1121
BstMWI	GCNNNNNNNGC	3 cut(s)	632, 648, 920
BstNI	CCWGG	1 cut(s)	1185
BstSCI	CCNGG	1 cut(s)	1183
BstSFI	CTRYAG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	983
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	5 cut(s)	521, 613, 830, 910, 932
BstX2I	RGATCY	2 cut(s)	466, 1121
BstYI	RGATCY	2 cut(s)	466, 1121
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	272, 479
BtsCI	GGATG	1 cut(s)	840
BtsIMutI	CAGTG	1 cut(s)	993
BtuMI	TCGCGA	1 cut(s)	204
Cac8I	GCNNGC	5 cut(s)	177, 477, 522, 714, 1021
Cfr10I	RCCGGY	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	257, 298
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviAII	CATG	2 cut(s)	636, 1024
CviQI	GTAC	2 cut(s)	257, 298
DdeI	CTNAG	6 cut(s)	44, 209, 261, 939, 1114, 1125
DpnI	GATC	4 cut(s)	207, 468, 1068, 1123
DpnII	GATC	4 cut(s)	205, 466, 1066, 1121
Eam1104I	CTCTTC	2 cut(s)	372, 794
EarI	CTCTTC	2 cut(s)	372, 794
Ecl136II	GAGCTC	2 cut(s)	41, 740
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	4 cut(s)	43, 85, 618, 742
Eco53kI	GAGCTC	2 cut(s)	41, 740
Eco57I	CTGAAG	1 cut(s)	777
Eco88I	CYCGRG	2 cut(s)	749, 867
EcoICRI	GAGCTC	2 cut(s)	41, 740
EcoRII	CCWGG	1 cut(s)	1183
EcoT38I	GRGCYC	4 cut(s)	43, 85, 618, 742
FaeI	CATG	2 cut(s)	639, 1027
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	2 cut(s)	635, 1023
Fnu4HI	GCNGC	5 cut(s)	510, 627, 819, 921, 924
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	4 cut(s)	43, 85, 618, 742
Fsp4HI	GCNGC	5 cut(s)	510, 627, 819, 921, 924
FspBI	CTAG	1 cut(s)	999
GluI	GCNGC	5 cut(s)	510, 627, 819, 921, 924
HaeIII	GGCC	2 cut(s)	272, 479
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	639, 1027
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	1054
HinfI	GANTC	9 cut(s)	307, 314, 334, 351, 559, 587, 752, 892, 1135
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	4 cut(s)	79, 403, 703, 1115
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	8 cut(s)	186, 212, 234, 252, 656, 757, 1117, 1126
Hpy188III	TCNNGA	9 cut(s)	203, 304, 311, 331, 395, 457, 563, 749, 867
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	5 cut(s)	262, 752, 818, 1080, 1112
HpyCH4III	ACNGT	4 cut(s)	117, 837, 988, 1156
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	632, 648, 920
HpyF3I	CTNAG	6 cut(s)	44, 209, 261, 939, 1114, 1125
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	639, 1027
Kzo9I	GATC	4 cut(s)	205, 466, 1066, 1121
LmnI	GCTCC	1 cut(s)	1214
Lsp1109I	GCAGC	5 cut(s)	521, 613, 830, 910, 932
LweI	GCATC	3 cut(s)	58, 699, 1162
MaeI	CTAG	1 cut(s)	999
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	4 cut(s)	207, 468, 1068, 1123
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	4 cut(s)	205, 466, 1066, 1121
MboII	GAAGA	4 cut(s)	135, 277, 389, 811
MfeI	CAATTG	2 cut(s)	546, 1086
MflI	RGATCY	2 cut(s)	466, 1121
MhlI	GDGCHC	5 cut(s)	43, 85, 618, 742, 983
MluCI	AATT	7 cut(s)	19, 238, 546, 744, 873, 933, 1086
MlyI	GAGTC	4 cut(s)	301, 553, 761, 886
MmeI	TCCRAC	1 cut(s)	257
MseI	TTAA	4 cut(s)	12, 104, 504, 1062
MslI	CAYNNNNRTG	2 cut(s)	986, 1170
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	1185
MunI	CAATTG	2 cut(s)	546, 1086
Mva1269I	GAATGC	2 cut(s)	246, 364
MvaI	CCWGG	1 cut(s)	1185
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	632, 648, 920
NdeII	GATC	4 cut(s)	205, 466, 1066, 1121
NlaIII	CATG	2 cut(s)	639, 1027
NlaIV	GGNNCC	2 cut(s)	468, 1182
NmuCI	GTSAC	1 cut(s)	607
NruI	TCGCGA	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	986
PaeR7I	CTCGAG	2 cut(s)	749, 867
PceI	AGGCCT	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	2 cut(s)	190, 233
PctI	GAATGC	2 cut(s)	246, 364
PfeI	GAWTC	5 cut(s)	314, 334, 351, 587, 1135
PflFI	GACNNNGTC	1 cut(s)	422
PkrI	GCNGC	5 cut(s)	511, 628, 820, 922, 925
PleI	GAGTC	4 cut(s)	301, 553, 760, 886
PpsI	GAGTC	4 cut(s)	301, 553, 760, 886
PshBI	ATTAAT	2 cut(s)	104, 504
Psp124BI	GAGCTC	2 cut(s)	43, 742
Psp6I	CCWGG	1 cut(s)	1183
PspGI	CCWGG	1 cut(s)	1183
PspN4I	GGNNCC	2 cut(s)	468, 1182
PsuI	RGATCY	2 cut(s)	466, 1121
PsyI	GACNNNGTC	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	923
RruI	TCGCGA	1 cut(s)	204
RsaI	GTAC	2 cut(s)	258, 299
RsaNI	GTAC	2 cut(s)	257, 298
RseI	CAYNNNNRTG	2 cut(s)	986, 1170
SacI	GAGCTC	2 cut(s)	43, 742
SaqAI	TTAA	4 cut(s)	12, 104, 504, 1062
SatI	GCNGC	5 cut(s)	510, 627, 819, 921, 924
Sau3AI	GATC	4 cut(s)	205, 466, 1066, 1121
SchI	GAGTC	4 cut(s)	301, 553, 761, 886
ScrFI	CCNGG	1 cut(s)	1185
SduI	GDGCHC	5 cut(s)	43, 85, 618, 742, 983
SfaNI	GCATC	3 cut(s)	58, 699, 1162
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	2 cut(s)	749, 867
SlaI	CTCGAG	2 cut(s)	749, 867
SmiMI	CAYNNNNRTG	2 cut(s)	986, 1170
SmlI	CTYRAG	4 cut(s)	749, 867, 896, 1032
SmoI	CTYRAG	4 cut(s)	749, 867, 896, 1032
Sse9I	AATT	7 cut(s)	19, 238, 546, 744, 873, 933, 1086
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	5 cut(s)	286, 405, 689, 909, 1204
SspI	AATATT	2 cut(s)	813, 967
SspMI	CTAG	1 cut(s)	999
SstI	GAGCTC	2 cut(s)	43, 742
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	1183
TaaI	ACNGT	4 cut(s)	117, 837, 988, 1156
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	5 cut(s)	119, 750, 868, 951, 1138
TasI	AATT	7 cut(s)	19, 238, 546, 744, 873, 933, 1086
TfiI	GAWTC	5 cut(s)	314, 334, 351, 587, 1135
Tru1I	TTAA	4 cut(s)	12, 104, 504, 1062
Tru9I	TTAA	4 cut(s)	12, 104, 504, 1062
TscAI	CASTG	1 cut(s)	993
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	5 cut(s)	509, 626, 818, 920, 923
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	17, 675, 1176
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	1 cut(s)	993
Tth111I	GACNNNGTC	1 cut(s)	422
VspI	ATTAAT	2 cut(s)	104, 504
XapI	RAATTY	2 cut(s)	238, 744
XhoI	CTCGAG	2 cut(s)	749, 867
XspI	CTAG	1 cut(s)	999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.