Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Forward (+)

57079640 .. 57082107

Gene Structure 2468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTTTAGGGCGAGACATCTCATCCGTCCCACATCTGCCATCACCCTCGGGCATCCAAACCCTATTCTCTCCTCTCCATCGTCTTCTTTGAATGCACACAATTTTCCCACAGTTCGAAATTACATCAGAAATCGAGACAGTAACTATGTGAATAGGTGTCCCATGAACTTTGGCGTCCTTTTTGTGCCGGAAGCGGAAGCTTTTGTGGTCCAGCGGTGTGGAAAGTTCACCCAGATTCTACCCCCTGGAATCAATTTCTTGGTTCCCTTCGTAGATAAAGTTGCCTACGTGCATTCCTTGAAAGAGGAGGTCATAAGTGTTCCTGACCAGTCTGCTACCACCAAAGACAATGTCGAAATTAGGATTGATGCAGTGCTTTATGTCAAGATTGTGGATGCTTATAAGGCCTCATATGGGGGTGGCTCATATGGGGGTGGAAGTCCTATTGTTTTAGCTATTAACCATGCCCAGGCAGTCATGCGTGACGCAATCGGACTTATGACTCTTGACAGGACATTTGAGGGAAGAAACTACCTGAATGAGAAAATATTGGAGGCACTTAAAGGTAGTGAGAGCGATTGGGGCTTAAGTTGCCTTAGATATGAAATAAGGGATATAACTCCTCCACCTGCGGTGAGGCAATCTATGGAGATGCAAGCTGATGCAGAACGCAAAAAAAGAGCTCTAATTCTTTCTTCCGAAGGAGATAGACAGAAGACCCTTAACAAGGCAGATGGAGACAAGACTAGAGATATTTTAGCAGCAGAAGCCAAAAAGAGAGCTGTATCAGATGCAGAAGCTTACGCCATCCGTGCTAAAGCAGCTGCAACATCCGAAGGTATTGCTCTCATGTCAAAGAAACTCGAGGAAATTGGGGGTAAAGAGGCTGCCGCTTTGACTATTGCTGAGCAATACGTTAATGCCTTTGGAAATATCGCTAAAGAGGGCACAACTGTGTTGCTTCCATCTGCTGCTTCAGATCCTGCTAGCATGATCTCTCAGGCACTGAGTATCTACAAAAGATTGAGTGAAAAACACTCCACTCATGACTTACGTGAAATCTGCGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

358

Amino Acids

39.13

Weight (kDa)

8.21

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	62 - 235	8e-30	SPFH domain / Band 7 family
Band_7_C	PF16200	285 - 343	2.6e-23	C-terminal region of band_7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AciI	CCGC	4 cut(s)	194, 214, 632, 891
AclWI	GGATC	1 cut(s)	974
AcuI	CTGAAG	1 cut(s)	960
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	3 cut(s)	414, 469, 727
AflII	CTTAAG	1 cut(s)	586
AgsI	TTSAA	2 cut(s)	91, 301
AjnI	CCWGG	2 cut(s)	244, 468
AleI	CACNNNNGTG	1 cut(s)	953
AluBI	AGCT	7 cut(s)	200, 455, 659, 683, 782, 800, 824
AluI	AGCT	7 cut(s)	200, 455, 659, 683, 782, 800, 824
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	3 cut(s)	7, 129, 732
AlwI	GGATC	1 cut(s)	974
AlwNI	CAGNNNCTG	2 cut(s)	983, 1006
Ama87I	CYCGRG	2 cut(s)	47, 863
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	5 cut(s)	761, 821, 824, 887, 971
ArsI	GACNNNNNNTTYG	4 cut(s)	336, 368, 500, 532
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	34, 220, 646
AsuII	TTCGAA	1 cut(s)	115
AsuNHI	GCTAGC	1 cut(s)	986
AvaI	CYCGRG	2 cut(s)	47, 863
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	685
BbsI	GAAGAC	2 cut(s)	75, 722
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	5 cut(s)	773, 811, 833, 874, 958
BccI	CCATC	5 cut(s)	47, 85, 728, 815, 973
BcgI	CGANNNNNNTGC	2 cut(s)	824, 858
BciT130I	CCWGG	2 cut(s)	246, 470
BcoDI	GTCTC	3 cut(s)	7, 129, 732
BfaI	CTAG	2 cut(s)	747, 987
BfrI	CTTAAG	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	6 cut(s)	762, 822, 825, 888, 891, 972
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	6 cut(s)	763, 823, 826, 889, 892, 973
Bme1390I	CCNGG	2 cut(s)	246, 470
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	2 cut(s)	47, 863
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	246, 470
BmsI	GCATC	6 cut(s)	61, 358, 385, 642, 652, 781
BmtI	GCTAGC	1 cut(s)	990
BpiI	GAAGAC	2 cut(s)	75, 722
Bpu1102I	GCTNAGC	1 cut(s)	906
Bpu14I	TTCGAA	1 cut(s)	115
BsaAI	YACGTR	2 cut(s)	289, 1055
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	46, 244, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 469, 727
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	246, 470
BseDI	CCNNGG	3 cut(s)	46, 244, 468
BseGI	GGATG	5 cut(s)	21, 52, 400, 807, 830
BseLI	CCNNNNNNNGG	3 cut(s)	414, 469, 727
BseMII	CTCAG	3 cut(s)	897, 998, 1013
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	3 cut(s)	61, 320, 612
BseSI	GKGCMC	1 cut(s)	950
BseXI	GCAGC	5 cut(s)	773, 811, 833, 874, 958
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	685
BsiHKCI	CYCGRG	2 cut(s)	47, 863
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	2 cut(s)	12, 144
BslI	CCNNNNNNNGG	3 cut(s)	414, 469, 727
BsmAI	GTCTC	3 cut(s)	7, 129, 732
BsmFI	GGGAC	2 cut(s)	12, 144
BsmI	GAATGC	2 cut(s)	97, 292
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	2 cut(s)	47, 863
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	685, 950
Bsp143I	GATC	2 cut(s)	979, 993
Bsp1720I	GCTNAGC	1 cut(s)	906
BspACI	CCGC	4 cut(s)	194, 214, 632, 891
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	3 cut(s)	898, 999, 1012
BspHI	TCATGA	1 cut(s)	1045
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	637
BspOI	GCTAGC	1 cut(s)	990
BspPI	GGATC	1 cut(s)	974
BspT104I	TTCGAA	1 cut(s)	115
BspTI	CTTAAG	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	46, 244, 468
BssMI	GATC	2 cut(s)	979, 993
BssNI	GRCGYC	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	246, 470
Bst4CI	ACNGT	3 cut(s)	112, 140, 955
Bst6I	CTCTTC	1 cut(s)	1062
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	586
BstBAI	YACGTR	2 cut(s)	289, 1055
BstBI	TTCGAA	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	657, 988
BstDEI	CTNAG	4 cut(s)	596, 906, 999, 1007
BstENI	CCTNNNNNAGG	1 cut(s)	725
BstF5I	GGATG	5 cut(s)	21, 52, 400, 807, 830
BstKTI	GATC	2 cut(s)	982, 996
BstMAI	GTCTC	3 cut(s)	7, 129, 732
BstMBI	GATC	2 cut(s)	979, 993
BstMWI	GCNNNNNNNGC	6 cut(s)	404, 582, 591, 767, 812, 821
BstNI	CCWGG	2 cut(s)	246, 470
BstSCI	CCNGG	2 cut(s)	244, 468
BstSLI	GKGCMC	1 cut(s)	950
BstV1I	GCAGC	5 cut(s)	773, 811, 833, 874, 958
BstV2I	GAAGAC	2 cut(s)	75, 722
BstX2I	RGATCY	1 cut(s)	979
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	979
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	5 cut(s)	21, 52, 400, 807, 830
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 1004
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	2 cut(s)	657, 988
CaiI	CAGNNNCTG	2 cut(s)	983, 1006
CciI	TCATGA	1 cut(s)	1045
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	2 cut(s)	163, 494
CviAII	CATG	6 cut(s)	163, 464, 478, 850, 991, 1046
DdeI	CTNAG	4 cut(s)	596, 906, 999, 1007
DpnI	GATC	2 cut(s)	981, 995
DpnII	GATC	2 cut(s)	979, 993
Eam1104I	CTCTTC	1 cut(s)	1062
EarI	CTCTTC	1 cut(s)	1062
Ecl136II	GAGCTC	1 cut(s)	683
Eco147I	AGGCCT	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	960
Eco88I	CYCGRG	2 cut(s)	47, 863
EcoICRI	GAGCTC	1 cut(s)	683
EcoNI	CCTNNNNNAGG	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	244, 468
EcoT38I	GRGCYC	1 cut(s)	685
FaeI	CATG	6 cut(s)	166, 467, 481, 853, 994, 1049
FaqI	GGGAC	2 cut(s)	12, 144
FatI	CATG	6 cut(s)	162, 463, 477, 849, 990, 1045
FauNDI	CATATG	2 cut(s)	412, 427
Fnu4HI	GCNGC	6 cut(s)	762, 822, 825, 888, 891, 972
FokI	GGATG	5 cut(s)	8, 39, 407, 794, 817
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	6 cut(s)	762, 822, 825, 888, 891, 972
FspBI	CTAG	2 cut(s)	747, 987
GluI	GCNGC	6 cut(s)	762, 822, 825, 888, 891, 972
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	2 cut(s)	163, 494
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	6 cut(s)	166, 467, 481, 853, 994, 1049
HindIII	AAGCTT	2 cut(s)	198, 798
HinfI	GANTC	3 cut(s)	235, 249, 502
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	34, 220, 646
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	6 cut(s)	128, 494, 700, 790, 835, 979
Hpy188III	TCNNGA	5 cut(s)	134, 323, 385, 506, 1046
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	3 cut(s)	277, 695, 830
HpyCH4III	ACNGT	3 cut(s)	112, 140, 955
HpyCH4IV	ACGT	3 cut(s)	288, 915, 1054
HpyCH4V	TGCA	7 cut(s)	95, 292, 371, 655, 665, 794, 827
HpyF10VI	GCNNNNNNNGC	6 cut(s)	404, 582, 591, 767, 812, 821
HpyF3I	CTNAG	4 cut(s)	596, 906, 999, 1007
HpySE526I	ACGT	3 cut(s)	288, 915, 1054
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	6 cut(s)	166, 467, 481, 853, 994, 1049
Kzo9I	GATC	2 cut(s)	979, 993
Lsp1109I	GCAGC	5 cut(s)	773, 811, 833, 874, 958
LweI	GCATC	6 cut(s)	61, 358, 385, 642, 652, 781
MaeI	CTAG	2 cut(s)	747, 987
MaeII	ACGT	3 cut(s)	288, 915, 1054
MaeIII	GTNAC	2 cut(s)	140, 482
MalI	GATC	2 cut(s)	981, 995
MboI	GATC	2 cut(s)	979, 993
MboII	GAAGA	4 cut(s)	75, 537, 687, 727
MflI	RGATCY	1 cut(s)	979
MhlI	GDGCHC	2 cut(s)	685, 950
MluCI	AATT	6 cut(s)	100, 118, 253, 357, 687, 870
MlyI	GAGTC	1 cut(s)	496
MseI	TTAA	5 cut(s)	459, 561, 587, 723, 918
MslI	CAYNNNNRTG	1 cut(s)	953
MspA1I	CMGCKG	2 cut(s)	214, 824
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	246, 470
Mva1269I	GAATGC	2 cut(s)	97, 292
MvaI	CCWGG	2 cut(s)	246, 470
MwoI	GCNNNNNNNGC	6 cut(s)	404, 582, 591, 767, 812, 821
NdeI	CATATG	2 cut(s)	412, 427
NdeII	GATC	2 cut(s)	979, 993
NheI	GCTAGC	1 cut(s)	986
NlaIII	CATG	6 cut(s)	166, 467, 481, 853, 994, 1049
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	953
PaeR7I	CTCGAG	1 cut(s)	863
PagI	TCATGA	1 cut(s)	1045
PaqCI	CACCTGC	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	407
PctI	GAATGC	2 cut(s)	97, 292
PfeI	GAWTC	2 cut(s)	235, 249
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	6 cut(s)	763, 823, 826, 889, 892, 973
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Ppu21I	YACGTR	2 cut(s)	289, 1055
PsiI	TTATAA	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	685
Psp6I	CCWGG	2 cut(s)	244, 468
PspGI	CCWGG	2 cut(s)	244, 468
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	863
PstNI	CAGNNNCTG	2 cut(s)	983, 1006
PsuI	RGATCY	1 cut(s)	979
PsyI	GACNNNGTC	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	824
RseI	CAYNNNNRTG	1 cut(s)	953
SacI	GAGCTC	1 cut(s)	685
SaqAI	TTAA	5 cut(s)	459, 561, 587, 723, 918
SatI	GCNGC	6 cut(s)	762, 822, 825, 888, 891, 972
Sau3AI	GATC	2 cut(s)	979, 993
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	246, 470
SduI	GDGCHC	2 cut(s)	685, 950
SfaNI	GCATC	6 cut(s)	61, 358, 385, 642, 652, 781
Sfr274I	CTCGAG	1 cut(s)	863
SfuI	TTCGAA	1 cut(s)	115
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	863
SmiMI	CAYNNNNRTG	1 cut(s)	953
SmlI	CTYRAG	2 cut(s)	586, 863
SmoI	CTYRAG	2 cut(s)	586, 863
Sse9I	AATT	6 cut(s)	100, 118, 253, 357, 687, 870
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	4 cut(s)	194, 214, 632, 891
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	2 cut(s)	747, 987
SstI	GAGCTC	1 cut(s)	685
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	244, 468
TaaI	ACNGT	3 cut(s)	112, 140, 955
TaiI	ACGT	3 cut(s)	291, 918, 1057
TaqI	TCGA	4 cut(s)	115, 133, 354, 864
TasI	AATT	6 cut(s)	100, 118, 253, 357, 687, 870
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	2 cut(s)	235, 249
Tru1I	TTAA	5 cut(s)	459, 561, 587, 723, 918
Tru9I	TTAA	5 cut(s)	459, 561, 587, 723, 918
TscAI	CASTG	2 cut(s)	378, 1011
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	5 cut(s)	761, 821, 824, 887, 971
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	179, 618
TspGWI	ACGGA	2 cut(s)	14, 800
TspRI	CASTG	2 cut(s)	378, 1011
Tth111I	GACNNNGTC	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	725
XhoI	CTCGAG	1 cut(s)	863
XspI	CTAG	2 cut(s)	747, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.