Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007173.1

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Reverse (-)

113320 .. 116051

Gene Structure 2732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007173.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgtgtaggaaccatgagattgctccaccaatcaactggggaattcggattgtgccggaacgtatggctttcgtgattgagcggtttgggaagtaccacacgactctgcagtctgggatccattttctgattccgtttgtcgacagaattgcttttgtgcattcgttgaaagaggaggtctttaatgtgccagaccaggcagctatcacccaagacaatgtcaggattcaggttgatggggttatttacctgaagattgaggacccccacctggcctcctatggatctgtgcggccttttgatgcagctattcagcttgctcaggggatcatgcgtacagcaattgcgaaacttactcttgacaatgcattcaaggaaagagaaaacctcaatgatgagatagtgagggtagtcaacgaagctgcaacagcatatggcttgaggtgcatccgatatgtgataagggacataactcctcctcttgcggtgaggcaatctatggaaatgcaagcagatgcagaacgcaaaaagagagttaaaattcttgtgtctgaaggtgaaagggatgccgccattaaccaagcagaaggggagaggcgtgctgcatttttagctgcagaaggagaacttgctaaagcagatgcggcttctaaaggaatttcccttgtatcaaagagtcttatggaagctgggggtatagaggctgctggtttgaaagtcgctgagcagtatgtcattgcatttggaaatctggcgaaacagggcacctcaacagtgtttcttcccaatgatgctactggtgtctcctccatgatttctcaagccatttctctttataaaaggttgggtggggatccaaccactggatcaactggaggctttaaggatgatactcccttgaaagaatctcagcatgcaactaagttgattgaggaaacagttgatggagataaggcttcaaagttttcccttcaaaaccagaaggtgcctgatgaacttgggttttctcttcaaaaccgcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

341

Amino Acids

37.41

Weight (kDa)

6.35

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	837
AasI	GACNNNNNNGTC	1 cut(s)	109
AccB1I	GGYRCC	2 cut(s)	764, 985
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	6 cut(s)	82, 292, 485, 570, 644, 1018
AclWI	GGATC	7 cut(s)	112, 125, 292, 335, 848, 861, 874
AcsI	RAATTY	3 cut(s)	42, 540, 657
AcuI	CTGAAG	2 cut(s)	272, 573
AfaI	GTAC	2 cut(s)	95, 337
AfiI	CCNNNNNNNGG	2 cut(s)	271, 863
AgsI	TTSAA	7 cut(s)	169, 373, 715, 901, 960, 974, 1013
AjnI	CCWGG	2 cut(s)	195, 270
AluBI	AGCT	6 cut(s)	203, 308, 316, 422, 614, 689
AluI	AGCT	6 cut(s)	203, 308, 316, 422, 614, 689
Alw26I	GTCTC	1 cut(s)	808
AlwI	GGATC	7 cut(s)	112, 125, 292, 335, 848, 861, 874
AoxI	GGCC	2 cut(s)	273, 293
ApeKI	GCWGC	6 cut(s)	200, 305, 422, 602, 614, 704
ApoI	RAATTY	3 cut(s)	42, 540, 657
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	3 cut(s)	199, 499, 569
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	767
BamHI	GGATCC	2 cut(s)	117, 853
BanI	GGYRCC	2 cut(s)	764, 985
BbvI	GCAGC	6 cut(s)	212, 317, 409, 589, 601, 691
BccI	CCATC	2 cut(s)	230, 938
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	197, 272
BcoDI	GTCTC	1 cut(s)	808
BfmI	CTRYAG	2 cut(s)	107, 615
BisI	GCNGC	9 cut(s)	201, 293, 306, 423, 570, 603, 615, 645, 705
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	9 cut(s)	202, 294, 307, 424, 571, 604, 616, 646, 706
Bme1390I	CCNGG	2 cut(s)	197, 272
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	6 cut(s)	11, 119, 264, 766, 855, 987
BmrFI	CCNGG	2 cut(s)	197, 272
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	6 cut(s)	292, 456, 505, 556, 631, 781
BmuI	ACTGGG	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	372, 404
BpmI	CTGGAG	1 cut(s)	894
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	2 cut(s)	460, 804
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 863
Bse1I	ACTGG	4 cut(s)	41, 802, 868, 877
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	2 cut(s)	197, 272
BseGI	GGATG	3 cut(s)	447, 571, 892
BseLI	CCNNNNNNNGG	2 cut(s)	271, 863
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	335, 714, 923
BseNI	ACTGG	4 cut(s)	41, 802, 868, 877
BseRI	GAGGAG	4 cut(s)	188, 465, 468, 796
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	6 cut(s)	212, 317, 409, 589, 601, 691
BseYI	CCCAGC	1 cut(s)	689
BshFI	GGCC	2 cut(s)	275, 295
BshNI	GGYRCC	2 cut(s)	764, 985
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	271, 863
BsmAI	GTCTC	1 cut(s)	808
BsmFI	GGGAC	1 cut(s)	479
BsmI	GAATGC	2 cut(s)	160, 368
BsnI	GGCC	2 cut(s)	275, 295
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp143I	GATC	5 cut(s)	117, 284, 327, 853, 866
Bsp1720I	GCTNAGC	1 cut(s)	723
BspACI	CCGC	6 cut(s)	82, 292, 485, 570, 644, 1018
BspANI	GGCC	2 cut(s)	275, 295
BspCNI	CTCAG	3 cut(s)	334, 715, 922
BspLI	GGNNCC	6 cut(s)	11, 119, 264, 766, 855, 987
BspMAI	CTGCAG	2 cut(s)	111, 619
BspPI	GGATC	7 cut(s)	112, 125, 292, 335, 848, 861, 874
BspT107I	GGYRCC	2 cut(s)	764, 985
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	4 cut(s)	41, 802, 868, 877
BssMI	GATC	5 cut(s)	117, 284, 327, 853, 866
Bst2UI	CCWGG	2 cut(s)	197, 272
Bst4CI	ACNGT	2 cut(s)	775, 940
Bst6I	CTCTTC	1 cut(s)	1014
BstC8I	GCNNGC	4 cut(s)	318, 510, 600, 915
BstDEI	CTNAG	4 cut(s)	321, 723, 909, 921
BstF5I	GGATG	3 cut(s)	447, 571, 892
BstKTI	GATC	5 cut(s)	120, 287, 330, 856, 869
BstMAI	GTCTC	1 cut(s)	808
BstMBI	GATC	5 cut(s)	117, 284, 327, 853, 866
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 444, 611, 644
BstNI	CCWGG	2 cut(s)	197, 272
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	2 cut(s)	195, 270
BstSFI	CTRYAG	2 cut(s)	107, 615
BstSLI	GKGCMC	1 cut(s)	767
BstV1I	GCAGC	6 cut(s)	212, 317, 409, 589, 601, 691
BstX2I	RGATCY	3 cut(s)	117, 284, 853
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	3 cut(s)	117, 284, 853
BsuRI	GGCC	2 cut(s)	275, 295
BtsCI	GGATG	3 cut(s)	447, 571, 892
BtsIMutI	CAGTG	2 cut(s)	780, 861
Cac8I	GCNNGC	4 cut(s)	318, 510, 600, 915
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	94, 336
CviAII	CATG	4 cut(s)	14, 331, 811, 914
CviQI	GTAC	2 cut(s)	94, 336
DdeI	CTNAG	4 cut(s)	321, 723, 909, 921
DpnI	GATC	5 cut(s)	119, 286, 329, 855, 868
DpnII	GATC	5 cut(s)	117, 284, 327, 853, 866
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	1014
EarI	CTCTTC	1 cut(s)	1014
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	272, 573
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	195, 270
EcoT22I	ATGCAT	1 cut(s)	370
FaeI	CATG	4 cut(s)	17, 334, 814, 917
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	4 cut(s)	13, 330, 810, 913
FauNDI	CATATG	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	9 cut(s)	201, 293, 306, 423, 570, 603, 615, 645, 705
FokI	GGATG	3 cut(s)	434, 578, 899
Fsp4HI	GCNGC	9 cut(s)	201, 293, 306, 423, 570, 603, 615, 645, 705
GluI	GCNGC	9 cut(s)	201, 293, 306, 423, 570, 603, 615, 645, 705
GsaI	CCCAGC	1 cut(s)	693
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	275, 295
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	4 cut(s)	17, 334, 814, 917
HincII	GTYRAC	2 cut(s)	142, 415
HindII	GTYRAC	2 cut(s)	142, 415
HinfI	GANTC	5 cut(s)	103, 130, 226, 676, 905
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	199, 499, 569
Hpy166II	GTNNAC	2 cut(s)	142, 415
Hpy188I	TCNGA	4 cut(s)	48, 129, 452, 553
Hpy188III	TCNNGA	3 cut(s)	73, 223, 359
Hpy8I	GTNNAC	2 cut(s)	142, 415
HpyAV	CCTTC	5 cut(s)	548, 581, 614, 976, 980
HpyCH4III	ACNGT	2 cut(s)	775, 940
HpyCH4IV	ACGT	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 444, 611, 644
HpyF3I	CTNAG	4 cut(s)	321, 723, 909, 921
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	4 cut(s)	17, 334, 814, 917
Kzo9I	GATC	5 cut(s)	117, 284, 327, 853, 866
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	6 cut(s)	212, 317, 409, 589, 601, 691
LweI	GCATC	6 cut(s)	292, 456, 505, 556, 631, 781
MaeII	ACGT	1 cut(s)	61
MalI	GATC	5 cut(s)	119, 286, 329, 855, 868
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	5 cut(s)	117, 284, 327, 853, 866
MboII	GAAGA	3 cut(s)	265, 773, 1001
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	3 cut(s)	117, 284, 853
MhlI	GDGCHC	1 cut(s)	767
MluCI	AATT	5 cut(s)	42, 147, 342, 540, 657
MlyI	GAGTC	2 cut(s)	97, 685
MmeI	TCCRAC	1 cut(s)	881
Mph1103I	ATGCAT	1 cut(s)	370
MseI	TTAA	4 cut(s)	183, 537, 576, 882
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	197, 272
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	2 cut(s)	160, 368
MvaI	CCWGG	2 cut(s)	197, 272
MwoI	GCNNNNNNNGC	4 cut(s)	428, 444, 611, 644
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	5 cut(s)	117, 284, 327, 853, 866
NlaIII	CATG	4 cut(s)	17, 334, 814, 917
NlaIV	GGNNCC	6 cut(s)	11, 119, 264, 766, 855, 987
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	1 cut(s)	917
PaeI	GCATGC	1 cut(s)	917
PctI	GAATGC	2 cut(s)	160, 368
PfeI	GAWTC	3 cut(s)	130, 226, 905
PflFI	GACNNNGTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	9 cut(s)	202, 294, 307, 424, 571, 604, 616, 646, 706
PleI	GAGTC	2 cut(s)	97, 684
PpsI	GAGTC	2 cut(s)	97, 684
PpuMI	RGGWCCY	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	837
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	195, 270
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	2 cut(s)	195, 270
PspN4I	GGNNCC	6 cut(s)	11, 119, 264, 766, 855, 987
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
PstI	CTGCAG	2 cut(s)	111, 619
PsuI	RGATCY	3 cut(s)	117, 284, 853
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	2 cut(s)	95, 337
RsaNI	GTAC	2 cut(s)	94, 336
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	183, 537, 576, 882
SatI	GCNGC	9 cut(s)	201, 293, 306, 423, 570, 603, 615, 645, 705
Sau3AI	GATC	5 cut(s)	117, 284, 327, 853, 866
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	2 cut(s)	97, 685
ScrFI	CCNGG	2 cut(s)	197, 272
SduI	GDGCHC	1 cut(s)	767
SfaNI	GCATC	6 cut(s)	292, 456, 505, 556, 631, 781
SfcI	CTRYAG	2 cut(s)	107, 615
SinI	GGWCC	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	439, 819
SmoI	CTYRAG	2 cut(s)	439, 819
SphI	GCATGC	1 cut(s)	917
Sse9I	AATT	5 cut(s)	42, 147, 342, 540, 657
SsiI	CCGC	6 cut(s)	82, 292, 485, 570, 644, 1018
StyD4I	CCNGG	2 cut(s)	195, 270
TaaI	ACNGT	2 cut(s)	775, 940
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	42, 147, 342, 540, 657
TauI	GCSGC	3 cut(s)	295, 572, 647
TfiI	GAWTC	3 cut(s)	130, 226, 905
Tru1I	TTAA	4 cut(s)	183, 537, 576, 882
Tru9I	TTAA	4 cut(s)	183, 537, 576, 882
TscAI	CASTG	2 cut(s)	780, 868
TseI	GCWGC	6 cut(s)	200, 305, 422, 602, 614, 704
TspDTI	ATGAA	1 cut(s)	1008
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	780, 868
Tth111I	GACNNNGTC	1 cut(s)	218
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	3 cut(s)	42, 540, 657
XceI	RCATGY	1 cut(s)	917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.