Rorug05G0565500

Stomatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004436
Physical Location & Seq
Forward (+)
75788394 .. 75791728
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0565500.1

Sequence Viewer

Length: 1596 bp
ATGGCATTCCGATTAGGCATAACCCTCCTACTTGTTCTGGTCTGCACTGCTGTGACAAGCAGTAGAGCTGCCAACTCACAGCACCGTGACACTTCTTCCCTCCACCGGAGCAGTTTTCCGGCAGGTTTCGTGTTCGGGACAGCTTCATCGGCTTACCAGTATGAAGGTGCTGCAAATGAAGGTGGTAGAGGTCCAAGTATATGGGACACATACACTCGCAAGTATCCCGAGAAGATTCACGACCACAGTACTGGAGATGTGGCTATTGATGAGTATCATCGCTATAAGGAAGATATCCGGATTATGAAAGACATGGGGCTTGATGCTTACAGGTTTTCAATTTCATGGTCAAGATTGTTACCAAATGGAAAGCTGAGTGGATGTGTGAACAAGGAAGGAATCAAATATTATAACAACCTCATCAACGAGCTTATAGCCAATGGTCTTGTACCCTATGTTACACTCTTTCATTGGGATACCCCTCAAGCTTTGGAAGATGAATTCGGTGGCTTCCTTAGCCCTAAAATTGTGGACCATTTCAAGGACTATGCAAATCTCTGCTATAAAGAATTTGGTGACAGAGTTAAGCACTGGATCACGTTAAATGAGCCATGGAGCTACTCCAATGGTGGTTATGTGATTGGAACATTTGCACCAACCCGATGTTCTGATTGGCAAAACCTAAATTGCACGGGTGGAGATTCAGGGACTGAGCCATACTTGGCGTCACATTACCAACTTCTAGCTCATGCAGCCGCCGTAAAATTGTACAGAGACAAATATCAGGCATCACAGAAGGGCGTGATTGGAATAACACTACTATCATATTGGTTCGTGCCATATTCTGATGCAAAGTGGGATGTAGATGCTGCAGAACGTGCATTGGATTTTATGTATGGATGGTTTATGGACCCCCTAATTAATGGAGACTATCCACGCAGCATGCGATATCTTGTTGCAGACCGATTACCCAAATTCACAAAAGAAGAATCCAAGTTGCTTAAGGGTTCATTTGATTTTATTGGAGTAAACTACTACACTGCTAACTTTGCAGCCTACAAGGCACCTTGTTTTAATGCTGCTCATCCTAATGCGAATAACCCAAGCTACACTACAGACGCTCTCGTTAATCTTTCAGTCGAGCGTGATGGTGTTCCTATTGGTCCAAAGACTGCTTTGGATTGGCTCTATATTTATCCAGAAGGATTTCGAGAGCTCTTGCTCTACACAAAGAACAAGTATAATGATCCAGTTATCTACATCACTGAAAATGGAGTTAATGAGCTGAACGATCCCGGATTATCGCTTGAGGAAGCCCTAACCGATAATCATAGAATTGACTATTACGATGCCCATCTCAGTTATCTTCTTTCAGCAATCAAGGACGGGGTTAAGGTGAAAGGATATTTTGCGTGGTCATTGTTTGATAACTTTGAATGGAATACGGGTTACACTTGTAGATTCGGCCTCAACTTTATAGATTACAAAAATGGACTCAAACGATACCCTAAACTCTCAGCTGGCTGGTTCAAGAAGTTTCTTCAAAAGTGTGTCGAGTTAGACGCAATTTCCTCTCGCAAATTTCAATCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

531

Amino Acids

60.51

Weight (kDa)

6.37

Isoelectric Point (pI)

21.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 36 - 515 1.3e-158 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
Acc36I ACCTGC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 1063
AccIII TCCGGA 1 cut(s) 297
AciI CCGC 1 cut(s) 756
AclWI GGATC 3 cut(s) 602, 1241, 1286
AcsI RAATTY 4 cut(s) 500, 569, 974, 1580
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 3 cut(s) 250, 450, 770
AfiI CCNNNNNNNGG 2 cut(s) 105, 541
AflII CTTAAG 1 cut(s) 1001
AgsI TTSAA 6 cut(s) 339, 541, 1436, 1531, 1544, 1586
AjuI GAANNNNNNNTTGG 2 cut(s) 649, 681
AleI CACNNNNGTG 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 1218
Alw26I GTCTC 2 cut(s) 768, 921
AlwI GGATC 3 cut(s) 602, 1241, 1286
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 297
AoxI GGCC 1 cut(s) 1465
ApeKI GCWGC 7 cut(s) 68, 170, 752, 869, 939, 1052, 1079
ApoI RAATTY 4 cut(s) 500, 569, 974, 1580
AseI ATTAAT 1 cut(s) 921
Asp700I GAANNNNTTC 1 cut(s) 1206
AspS9I GGNCC 4 cut(s) 191, 532, 910, 1163
AsuC2I CCSGG 1 cut(s) 1296
AsuHPI GGTGA 2 cut(s) 587, 1408
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 4 cut(s) 191, 532, 910, 1163
BanI GGYRCC 1 cut(s) 1063
BanII GRGCYC 1 cut(s) 1218
Bbv12I GWGCWC 1 cut(s) 1218
BbvI GCAGC 7 cut(s) 55, 157, 764, 856, 951, 1064, 1066
BccI CCATC 3 cut(s) 894, 1142, 1362
BceAI ACGGC 1 cut(s) 743
BciVI GTATCC 2 cut(s) 234, 469
BcnI CCSGG 1 cut(s) 1296
BcoDI GTCTC 2 cut(s) 768, 921
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 2 cut(s) 870, 1113
BfrI CTTAAG 1 cut(s) 1001
BfuAI ACCTGC 1 cut(s) 113
BfuI GTATCC 2 cut(s) 234, 469
BglI GCCNNNNNGGC 1 cut(s) 1061
BisI GCNGC 8 cut(s) 69, 171, 753, 756, 870, 940, 1053, 1080
BlsI GCNGC 8 cut(s) 70, 172, 754, 757, 871, 941, 1054, 1081
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 1296
Bme18I GGWCC 4 cut(s) 191, 532, 910, 1163
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 4 cut(s) 191, 532, 910, 1163
BmiI GGNNCC 2 cut(s) 912, 1065
BmrFI CCNGG 1 cut(s) 1296
BmsI GCATC 5 cut(s) 313, 797, 838, 856, 1339
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 515
BpuEI CTTGAG 2 cut(s) 468, 1328
BpuMI CCSGG 1 cut(s) 1296
BsaBI GATNNNNATC 2 cut(s) 273, 1353
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 1 cut(s) 611
BsaWI WCCGGW 2 cut(s) 105, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 541
Bse1I ACTGG 4 cut(s) 157, 256, 596, 1250
Bse8I GATNNNNATC 2 cut(s) 273, 1353
BseAI TCCGGA 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 611
BseGI GGATG 4 cut(s) 386, 865, 905, 1084
BseJI GATNNNNATC 2 cut(s) 273, 1353
BseLI CCNNNNNNNGG 2 cut(s) 105, 541
BseMII CTCAG 4 cut(s) 365, 702, 1372, 1530
BseNI ACTGG 4 cut(s) 157, 256, 596, 1250
BseXI GCAGC 7 cut(s) 55, 157, 764, 856, 951, 1064, 1066
BsgI GTGCAG 1 cut(s) 28
BshFI GGCC 1 cut(s) 1467
BshNI GGYRCC 1 cut(s) 1063
BsiHKAI GWGCWC 1 cut(s) 1218
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 4 cut(s) 106, 119, 298, 1296
BslFI GGGAC 3 cut(s) 151, 218, 721
BslI CCNNNNNNNGG 2 cut(s) 105, 541
BsmAI GTCTC 2 cut(s) 768, 921
BsmFI GGGAC 3 cut(s) 151, 218, 721
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 1467
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 1218
Bsp13I TCCGGA 1 cut(s) 297
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 3 cut(s) 594, 1246, 1291
Bsp19I CCATGG 1 cut(s) 611
BspACI CCGC 1 cut(s) 756
BspANI GGCC 1 cut(s) 1467
BspCNI CTCAG 4 cut(s) 366, 703, 1371, 1529
BspEI TCCGGA 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 912, 1065
BspMAI CTGCAG 1 cut(s) 874
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 3 cut(s) 602, 1241, 1286
BspT107I GGYRCC 1 cut(s) 1063
BspTI CTTAAG 1 cut(s) 1001
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 4 cut(s) 157, 256, 596, 1250
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 3 cut(s) 594, 1246, 1291
BssNI GRCGYC 1 cut(s) 725
BssT1I CCWWGG 1 cut(s) 611
Bst4CI ACNGT 2 cut(s) 86, 248
BstACI GRCGYC 1 cut(s) 725
BstAFI CTTAAG 1 cut(s) 1001
BstAPI GCANNNNNTGC 1 cut(s) 878
BstAUI TGTACA 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 944, 1522
BstDEI CTNAG 5 cut(s) 374, 515, 711, 1358, 1516
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 4 cut(s) 386, 865, 905, 1084
BstKTI GATC 3 cut(s) 597, 1249, 1294
BstMAI GTCTC 2 cut(s) 768, 921
BstMBI GATC 3 cut(s) 594, 1246, 1291
BstMWI GCNNNNNNNGC 6 cut(s) 149, 516, 752, 878, 1049, 1061
BstNSI RCATGY 1 cut(s) 946
BstSCI CCNGG 1 cut(s) 1294
BstSFI CTRYAG 2 cut(s) 870, 1113
BstV1I GCAGC 7 cut(s) 55, 157, 764, 856, 951, 1064, 1066
BstXI CCANNNNNNTGG 2 cut(s) 201, 251
BsuI GTATCC 2 cut(s) 234, 469
BsuRI GGCC 1 cut(s) 1467
BtgI CCRYGG 1 cut(s) 611
BtgZI GCGATG 1 cut(s) 263
BtsCI GGATG 4 cut(s) 386, 865, 905, 1084
BtsI GCAGTG 2 cut(s) 45, 1038
BtsIMutI CAGTG 4 cut(s) 45, 589, 1038, 1263
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 944, 1522
CaiI CAGNNNCTG 1 cut(s) 710
Cfr13I GGNCC 4 cut(s) 191, 532, 910, 1163
CseI GACGC 3 cut(s) 714, 1127, 1571
Csp6I GTAC 3 cut(s) 249, 449, 769
CviAII CATG 5 cut(s) 313, 345, 612, 749, 943
CviQI GTAC 3 cut(s) 249, 449, 769
DdeI CTNAG 5 cut(s) 374, 515, 711, 1358, 1516
DpnI GATC 3 cut(s) 596, 1248, 1293
DpnII GATC 3 cut(s) 594, 1246, 1291
Ecl136II GAGCTC 1 cut(s) 1216
Eco130I CCWWGG 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 1218
Eco32I GATATC 2 cut(s) 295, 950
Eco47I GGWCC 4 cut(s) 191, 532, 910, 1163
Eco53kI GAGCTC 1 cut(s) 1216
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 1216
EcoRI GAATTC 1 cut(s) 500
EcoRV GATATC 2 cut(s) 295, 950
EcoT14I CCWWGG 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 1218
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 5 cut(s) 316, 348, 615, 752, 946
FaqI GGGAC 3 cut(s) 151, 218, 721
FatI CATG 5 cut(s) 312, 344, 611, 748, 942
Fnu4HI GCNGC 8 cut(s) 69, 171, 753, 756, 870, 940, 1053, 1080
FokI GGATG 4 cut(s) 393, 872, 912, 1071
FriOI GRGCYC 1 cut(s) 1218
Fsp4HI GCNGC 8 cut(s) 69, 171, 753, 756, 870, 940, 1053, 1080
FspBI CTAG 1 cut(s) 743
GluI GCNGC 8 cut(s) 69, 171, 753, 756, 870, 940, 1053, 1080
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 1467
HapII CCGG 4 cut(s) 106, 119, 298, 1296
HgaI GACGC 3 cut(s) 714, 1127, 1571
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 5 cut(s) 316, 348, 615, 752, 946
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 6 cut(s) 235, 399, 701, 989, 1461, 1494
HpaII CCGG 4 cut(s) 106, 119, 298, 1296
HphI GGTGA 2 cut(s) 587, 1408
Hpy166II GTNNAC 3 cut(s) 388, 532, 1030
Hpy188I TCNGA 3 cut(s) 11, 670, 847
Hpy188III TCNNGA 8 cut(s) 136, 227, 239, 298, 351, 1199, 1211, 1531
Hpy8I GTNNAC 3 cut(s) 388, 532, 1030
HpyAV CCTTC 5 cut(s) 158, 173, 389, 790, 1196
HpyCH4III ACNGT 2 cut(s) 86, 248
HpyCH4IV ACGT 2 cut(s) 599, 877
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 516, 752, 878, 1049, 1061
HpyF3I CTNAG 5 cut(s) 374, 515, 711, 1358, 1516
HpySE526I ACGT 2 cut(s) 599, 877
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 5 cut(s) 316, 348, 615, 752, 946
Kpn2I TCCGGA 1 cut(s) 297
Kzo9I GATC 3 cut(s) 594, 1246, 1291
LmnI GCTCC 2 cut(s) 108, 615
Lsp1109I GCAGC 7 cut(s) 55, 157, 764, 856, 951, 1064, 1066
LweI GCATC 5 cut(s) 313, 797, 838, 856, 1339
MaeI CTAG 1 cut(s) 743
MaeII ACGT 2 cut(s) 599, 877
MaeIII GTNAC 7 cut(s) 52, 86, 357, 457, 575, 726, 1448
MalI GATC 3 cut(s) 596, 1248, 1293
MboI GATC 3 cut(s) 594, 1246, 1291
MboII GAAGA 7 cut(s) 87, 244, 302, 506, 998, 1358, 1532
MhlI GDGCHC 1 cut(s) 1218
MlyI GAGTC 1 cut(s) 1488
MnlI CCTC 8 cut(s) 35, 110, 182, 428, 492, 1303, 1478, 1582
MroI TCCGGA 1 cut(s) 297
MroXI GAANNNNTTC 1 cut(s) 1206
MseI TTAA 8 cut(s) 585, 602, 921, 1002, 1074, 1128, 1278, 1392
MslI CAYNNNNRTG 2 cut(s) 50, 1089
MspA1I CMGCKG 1 cut(s) 1520
MspCI CTTAAG 1 cut(s) 1001
MspI CCGG 4 cut(s) 106, 119, 298, 1296
MspR9I CCNGG 1 cut(s) 1296
Mva1269I GAATGC 1 cut(s) 5
MwoI GCNNNNNNNGC 6 cut(s) 149, 516, 752, 878, 1049, 1061
NciI CCSGG 1 cut(s) 1296
NcoI CCATGG 1 cut(s) 611
NdeII GATC 3 cut(s) 594, 1246, 1291
NlaIII CATG 5 cut(s) 316, 348, 615, 752, 946
NlaIV GGNNCC 2 cut(s) 912, 1065
NmuCI GTSAC 4 cut(s) 52, 86, 575, 726
NspI RCATGY 1 cut(s) 946
OliI CACNNNNGTG 1 cut(s) 50
PaeI GCATGC 1 cut(s) 946
PcsI WCGNNNNNNNCGW 1 cut(s) 943
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 1206
PfeI GAWTC 5 cut(s) 235, 399, 701, 989, 1461
PfoI TCCNGGA 1 cut(s) 1294
PkrI GCNGC 8 cut(s) 70, 172, 754, 757, 871, 941, 1054, 1081
PleI GAGTC 1 cut(s) 1488
PpsI GAGTC 1 cut(s) 1488
PshBI ATTAAT 1 cut(s) 921
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 1218
PspN4I GGNNCC 2 cut(s) 912, 1065
PspPI GGNCC 4 cut(s) 191, 532, 910, 1163
PstI CTGCAG 1 cut(s) 874
PstNI CAGNNNCTG 1 cut(s) 710
PvuII CAGCTG 1 cut(s) 1520
RsaI GTAC 3 cut(s) 250, 450, 770
RsaNI GTAC 3 cut(s) 249, 449, 769
RseI CAYNNNNRTG 2 cut(s) 50, 1089
SacI GAGCTC 1 cut(s) 1218
SaqAI TTAA 8 cut(s) 585, 602, 921, 1002, 1074, 1128, 1278, 1392
SatI GCNGC 8 cut(s) 69, 171, 753, 756, 870, 940, 1053, 1080
Sau3AI GATC 3 cut(s) 594, 1246, 1291
Sau96I GGNCC 4 cut(s) 191, 532, 910, 1163
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 1 cut(s) 1488
ScrFI CCNGG 1 cut(s) 1296
SduI GDGCHC 1 cut(s) 1218
SfaNI GCATC 5 cut(s) 313, 797, 838, 856, 1339
SfcI CTRYAG 2 cut(s) 870, 1113
SinI GGWCC 4 cut(s) 191, 532, 910, 1163
SmiMI CAYNNNNRTG 2 cut(s) 50, 1089
SmlI CTYRAG 3 cut(s) 483, 1001, 1307
SmoI CTYRAG 3 cut(s) 483, 1001, 1307
SphI GCATGC 1 cut(s) 946
SsiI CCGC 1 cut(s) 756
SspI AATATT 1 cut(s) 407
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 1218
StyD4I CCNGG 1 cut(s) 1294
StyI CCWWGG 1 cut(s) 611
TaaI ACNGT 2 cut(s) 86, 248
TaiI ACGT 2 cut(s) 602, 880
TaqI TCGA 3 cut(s) 1140, 1210, 1554
TaqII GACCGA 1 cut(s) 978
TatI WGTACW 2 cut(s) 248, 768
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 5 cut(s) 235, 399, 701, 989, 1461
Tru1I TTAA 8 cut(s) 585, 602, 921, 1002, 1074, 1128, 1278, 1392
Tru9I TTAA 8 cut(s) 585, 602, 921, 1002, 1074, 1128, 1278, 1392
TscAI CASTG 4 cut(s) 52, 596, 1045, 1270
TseFI GTSAC 4 cut(s) 52, 86, 575, 726
TseI GCWGC 7 cut(s) 68, 170, 752, 869, 939, 1052, 1079
Tsp45I GTSAC 4 cut(s) 52, 86, 575, 726
TspDTI ATGAA 8 cut(s) 135, 177, 192, 320, 333, 458, 513, 999
TspRI CASTG 4 cut(s) 52, 596, 1045, 1270
Vha464I CTTAAG 1 cut(s) 1001
VpaK11BI GGWCC 4 cut(s) 191, 532, 910, 1163
VspI ATTAAT 1 cut(s) 921
XapI RAATTY 4 cut(s) 500, 569, 974, 1580
XceI RCATGY 1 cut(s) 946
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 1 cut(s) 743
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.