Rroxscaffold_4G00277510

Stomatin-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
882941 .. 886564
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277510.1

Sequence Viewer

Length: 1233 bp
ATGAACAACCTCATCAAGCTCAGCTCCCTCAACGCCTTGAGATCCCTCCGCCATTCTCAGCCGTCGGCGACGGCGGCTCTCCGGACCCTCACCACCTGCTCGTCGCCCCTTGGCAACCGCTCGCTCGTGCCCGCTCCGTCTTCCTCGATCGTTCCCGGCGCGCAGAGTTTGCTCGGCGTTCGACATTTCCGTGGCAGCATCAACAGCGATTCCAAGAACCATGAGATTGCTCCACCAATCAACTGGGGAATTCGGATTGTGCCGGAACGTATGGCTTTTGTGATTGAGCGGTTTGGGAAGTACCACACGACTCTGCAGTCTGGGATCCATTTTCTGATTCCATTTGTCGACAGAATTGCTTTCGTGCATTCGTTGAAAGAGGAGGTCTTTAATGTGCCGGACCAGGCAGCTATCACCCAAGACAATGTCAGGATTCAGGTTGATGGGGTTATTTACCTGAAGATTGAGGACCCCCACCTGGCCTCCTATGGATCCGTGCGTCCTTTCGATGCAGCTATTCAGCTTGCTCAGGGGATCATGCGTACTGCAATTGCGAAACTTACTCTTGACAATGCATTCAAGGAAAGAGAAAACCTCAATGATGAGATAGTGAGGGTAGTCAACGAAGCTGCAACAGCATATGGCTTGAGGTGCATCCGATATGTGATAAGGGACATAACTCCTCCTCTTGCGGTGAGGCAATCTATGGAAATGCAAGCAGATGCAGAACGCAAAAAGAGAGTTAAAATTCTTGTGTCTGAAGGTGAAAGGGATGCCGCCATTAACCAAGCAGAAGGGGAGAGGCGTGCTGCATTTTTAGCTGCAGAAGGAGAACTTGCTAAAGCAGATGCGGCTTCTAAAGGAATTTCCCTTGTATCAAAGAGTCTTATGGAAGCTGGGGGTATAGAGGCTGCTGGTTTGAAAGTCGCTGAGCAGTATGTCGTGGCCTTCGGAAATCTGGCTAAACAGGGCACCTCAACAGTGTTTCTTCCCAATGATGCTACTGGTGTCTCCTCCATGATTTCTCAAGCCATTTCTCTTTATAAAAGGTTGGGTGGGGATCCAACCACTGGATCAACTGGAGGCTTTAAGGCTGATACTCCCTCGAAAGAATCTCAGCATGCAACTAAGTTGATTGAGGAAACAGTTGATGGAGATAAGGCTACAAAGTTTTCCCTTCAAAACCAGAAGGTGCCTGATGAACTTGGGTTTTCTCTTCAAAACCGCAAGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

44.48

Weight (kDa)

9.04

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 86 - 267 1.5e-31 SPFH domain / Band 7 family
Band_7_C PF16200 292 - 351 1.7e-17 C-terminal region of band_7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
AarI CACCTGC 1 cut(s) 104
AasI GACNNNNNNGTC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 971, 1192
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccBSI CCGCTC 3 cut(s) 120, 134, 289
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 161
AccIII TCCGGA 1 cut(s) 81
AciI CCGC 9 cut(s) 49, 74, 118, 132, 289, 692, 777, 851, 1225
AclWI GGATC 9 cut(s) 36, 319, 332, 486, 499, 542, 1055, 1068, 1081
AcsI RAATTY 3 cut(s) 249, 747, 864
AcuI CTGAAG 2 cut(s) 479, 780
AfaI GTAC 2 cut(s) 302, 544
AfiI CCNNNNNNNGG 2 cut(s) 478, 1070
AgsI TTSAA 5 cut(s) 376, 580, 922, 1181, 1220
AjnI CCWGG 2 cut(s) 402, 477
AluBI AGCT 8 cut(s) 19, 24, 410, 515, 523, 629, 821, 896
AluI AGCT 8 cut(s) 19, 24, 410, 515, 523, 629, 821, 896
Alw26I GTCTC 1 cut(s) 1015
AlwI GGATC 9 cut(s) 36, 319, 332, 486, 499, 542, 1055, 1068, 1081
Aor13HI TCCGGA 1 cut(s) 81
AoxI GGCC 2 cut(s) 480, 945
ApeKI GCWGC 7 cut(s) 195, 407, 512, 629, 809, 821, 911
ApoI RAATTY 3 cut(s) 249, 747, 864
AspLEI GCGC 2 cut(s) 161, 163
AspS9I GGNCC 3 cut(s) 84, 400, 469
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 4 cut(s) 82, 406, 706, 776
AvaII GGWCC 3 cut(s) 84, 400, 469
BaeGI GKGCMC 2 cut(s) 132, 974
BamHI GGATCC 3 cut(s) 324, 491, 1060
BanI GGYRCC 2 cut(s) 971, 1192
BauI CACGAG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 7 cut(s) 207, 419, 524, 616, 796, 808, 898
BccI CCATC 2 cut(s) 437, 1145
BceAI ACGGC 2 cut(s) 46, 87
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 404, 479
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 1015
BfmI CTRYAG 2 cut(s) 314, 822
BfuAI ACCTGC 1 cut(s) 104
BlpI GCTNAGC 2 cut(s) 20, 930
Bme1390I CCNGG 3 cut(s) 156, 404, 479
Bme18I GGWCC 3 cut(s) 84, 400, 469
BmgT120I GGNCC 3 cut(s) 84, 400, 469
BmiI GGNNCC 7 cut(s) 86, 326, 471, 493, 973, 1062, 1194
BmrFI CCNGG 3 cut(s) 156, 404, 479
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 7 cut(s) 207, 499, 663, 712, 763, 838, 988
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 579, 611
BpmI CTGGAG 1 cut(s) 1101
Bpu10I CCTNAGC 1 cut(s) 528
Bpu1102I GCTNAGC 2 cut(s) 20, 930
BpuEI CTTGAG 3 cut(s) 58, 667, 1011
BpuMI CCSGG 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 109, 190
BsaWI WCCGGW 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 1070
Bse1I ACTGG 4 cut(s) 248, 1009, 1075, 1084
BseAI TCCGGA 1 cut(s) 81
BseBI CCWGG 2 cut(s) 404, 479
BseDI CCNNGG 2 cut(s) 109, 190
BseGI GGATG 2 cut(s) 654, 778
BseLI CCNNNNNNNGG 2 cut(s) 478, 1070
BseMII CTCAG 5 cut(s) 34, 71, 542, 921, 1130
BseNI ACTGG 4 cut(s) 248, 1009, 1075, 1084
BsePI GCGCGC 1 cut(s) 159
BseRI GAGGAG 4 cut(s) 395, 672, 675, 1003
BseSI GKGCMC 2 cut(s) 132, 974
BseXI GCAGC 7 cut(s) 207, 419, 524, 616, 796, 808, 898
BseYI CCCAGC 1 cut(s) 896
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 482, 947
BshNI GGYRCC 2 cut(s) 971, 1192
BsiEI CGRYCG 1 cut(s) 150
BsiSI CCGG 4 cut(s) 82, 156, 263, 398
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 2 cut(s) 478, 1070
BsmAI GTCTC 1 cut(s) 1015
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 2 cut(s) 367, 575
BsnI GGCC 2 cut(s) 482, 947
Bsp1286I GDGCHC 2 cut(s) 132, 974
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 7 cut(s) 41, 147, 324, 491, 534, 1060, 1073
Bsp1720I GCTNAGC 2 cut(s) 20, 930
BspACI CCGC 9 cut(s) 49, 74, 118, 132, 289, 692, 777, 851, 1225
BspANI GGCC 2 cut(s) 482, 947
BspCNI CTCAG 5 cut(s) 33, 70, 541, 922, 1129
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 7 cut(s) 86, 326, 471, 493, 973, 1062, 1194
BspMAI CTGCAG 2 cut(s) 318, 826
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 9 cut(s) 36, 319, 332, 486, 499, 542, 1055, 1068, 1081
BspT107I GGYRCC 2 cut(s) 971, 1192
BsrBI CCGCTC 3 cut(s) 120, 134, 289
BsrI ACTGG 4 cut(s) 248, 1009, 1075, 1084
BssECI CCNNGG 2 cut(s) 109, 190
BssHII GCGCGC 1 cut(s) 159
BssMI GATC 7 cut(s) 41, 147, 324, 491, 534, 1060, 1073
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 2 cut(s) 404, 479
Bst4CI ACNGT 2 cut(s) 982, 1147
Bst6I CTCTTC 1 cut(s) 1221
BstAPI GCANNNNNTGC 1 cut(s) 169
BstC8I GCNNGC 7 cut(s) 122, 132, 161, 525, 717, 807, 1122
BstDEI CTNAG 6 cut(s) 20, 57, 528, 930, 1116, 1128
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 654, 778
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 2 cut(s) 161, 163
BstKTI GATC 7 cut(s) 44, 150, 327, 494, 537, 1063, 1076
BstMAI GTCTC 1 cut(s) 1015
BstMBI GATC 7 cut(s) 41, 147, 324, 491, 534, 1060, 1073
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 7 cut(s) 74, 169, 204, 635, 651, 818, 851
BstNI CCWGG 2 cut(s) 404, 479
BstNSI RCATGY 1 cut(s) 1124
BstSCI CCNGG 3 cut(s) 154, 402, 477
BstSFI CTRYAG 2 cut(s) 314, 822
BstSLI GKGCMC 2 cut(s) 132, 974
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 7 cut(s) 207, 419, 524, 616, 796, 808, 898
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 4 cut(s) 41, 324, 491, 1060
BstXI CCANNNNNNTGG 1 cut(s) 243
BstYI RGATCY 4 cut(s) 41, 324, 491, 1060
BsuRI GGCC 2 cut(s) 482, 947
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 2 cut(s) 654, 778
BtsIMutI CAGTG 2 cut(s) 987, 1068
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 7 cut(s) 122, 132, 161, 525, 717, 807, 1122
CfoI GCGC 2 cut(s) 161, 163
Cfr13I GGNCC 3 cut(s) 84, 400, 469
CseI GACGC 1 cut(s) 488
Csp6I GTAC 2 cut(s) 301, 543
CviAII CATG 4 cut(s) 221, 538, 1018, 1121
CviQI GTAC 2 cut(s) 301, 543
DdeI CTNAG 6 cut(s) 20, 57, 528, 930, 1116, 1128
DpnI GATC 7 cut(s) 43, 149, 326, 493, 536, 1062, 1075
DpnII GATC 7 cut(s) 41, 147, 324, 491, 534, 1060, 1073
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 1221
EarI CTCTTC 1 cut(s) 1221
EciI GGCGGA 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 3 cut(s) 84, 400, 469
Eco57I CTGAAG 2 cut(s) 479, 780
EcoO109I RGGNCCY 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 402, 477
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 577
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 224, 541, 1021, 1124
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 1 cut(s) 686
FatI CATG 4 cut(s) 220, 537, 1017, 1120
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 640
FblI GTMKAC 1 cut(s) 348
FokI GGATG 2 cut(s) 641, 785
GlaI GCGC 2 cut(s) 160, 162
GsaI CCCAGC 1 cut(s) 900
GsuI CTGGAG 1 cut(s) 1101
HaeIII GGCC 2 cut(s) 482, 947
HapII CCGG 4 cut(s) 82, 156, 263, 398
HgaI GACGC 1 cut(s) 488
HhaI GCGC 2 cut(s) 161, 163
Hin1II CATG 4 cut(s) 224, 541, 1021, 1124
Hin6I GCGC 2 cut(s) 159, 161
HinP1I GCGC 2 cut(s) 159, 161
HincII GTYRAC 2 cut(s) 349, 622
HindII GTYRAC 2 cut(s) 349, 622
HinfI GANTC 6 cut(s) 209, 310, 337, 433, 883, 1112
HpaII CCGG 4 cut(s) 82, 156, 263, 398
HphI GGTGA 4 cut(s) 82, 406, 706, 776
Hpy166II GTNNAC 2 cut(s) 349, 622
Hpy188I TCNGA 5 cut(s) 255, 336, 659, 760, 953
Hpy188III TCNNGA 3 cut(s) 82, 430, 566
Hpy8I GTNNAC 2 cut(s) 349, 622
Hpy99I CGWCG 3 cut(s) 67, 73, 106
HpyAV CCTTC 6 cut(s) 755, 788, 821, 958, 1183, 1187
HpyCH4III ACNGT 2 cut(s) 982, 1147
HpyCH4IV ACGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 169, 204, 635, 651, 818, 851
HpyF3I CTNAG 6 cut(s) 20, 57, 528, 930, 1116, 1128
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 4 cut(s) 224, 541, 1021, 1124
HspAI GCGC 2 cut(s) 159, 161
Kpn2I TCCGGA 1 cut(s) 81
Kzo9I GATC 7 cut(s) 41, 147, 324, 491, 534, 1060, 1073
LmnI GCTCC 3 cut(s) 29, 139, 235
Lsp1109I GCAGC 7 cut(s) 207, 419, 524, 616, 796, 808, 898
LweI GCATC 7 cut(s) 207, 499, 663, 712, 763, 838, 988
MaeII ACGT 1 cut(s) 268
MalI GATC 7 cut(s) 43, 149, 326, 493, 536, 1062, 1075
MbiI CCGCTC 3 cut(s) 120, 134, 289
MboI GATC 7 cut(s) 41, 147, 324, 491, 534, 1060, 1073
MboII GAAGA 4 cut(s) 132, 472, 980, 1208
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 4 cut(s) 41, 324, 491, 1060
MhlI GDGCHC 2 cut(s) 132, 974
MluCI AATT 5 cut(s) 249, 354, 549, 747, 864
MlyI GAGTC 2 cut(s) 304, 892
MmeI TCCRAC 1 cut(s) 1088
Mph1103I ATGCAT 1 cut(s) 577
MroI TCCGGA 1 cut(s) 81
MseI TTAA 4 cut(s) 390, 744, 783, 1089
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 4 cut(s) 82, 156, 263, 398
MspR9I CCNGG 3 cut(s) 156, 404, 479
MunI CAATTG 1 cut(s) 549
Mva1269I GAATGC 2 cut(s) 367, 575
MvaI CCWGG 2 cut(s) 404, 479
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 7 cut(s) 74, 169, 204, 635, 651, 818, 851
NciI CCSGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 640
NdeII GATC 7 cut(s) 41, 147, 324, 491, 534, 1060, 1073
NlaIII CATG 4 cut(s) 224, 541, 1021, 1124
NlaIV GGNNCC 7 cut(s) 86, 326, 471, 493, 973, 1062, 1194
NmeAIII GCCGAG 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 1 cut(s) 1124
PaeI GCATGC 1 cut(s) 1124
PaqCI CACCTGC 1 cut(s) 104
PauI GCGCGC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PctI GAATGC 2 cut(s) 367, 575
PfeI GAWTC 4 cut(s) 209, 337, 433, 1112
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 1070
Ple19I CGATCG 1 cut(s) 150
PleI GAGTC 2 cut(s) 304, 891
PpsI GAGTC 2 cut(s) 304, 891
PpuMI RGGWCCY 1 cut(s) 469
PsiI TTATAA 1 cut(s) 1044
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 2 cut(s) 402, 477
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 2 cut(s) 402, 477
PspN4I GGNNCC 7 cut(s) 86, 326, 471, 493, 973, 1062, 1194
PspPI GGNCC 3 cut(s) 84, 400, 469
PspPPI RGGWCCY 1 cut(s) 469
PstI CTGCAG 2 cut(s) 318, 826
PsuI RGATCY 4 cut(s) 41, 324, 491, 1060
PsyI GACNNNGTC 1 cut(s) 425
PteI GCGCGC 1 cut(s) 159
PvuI CGATCG 1 cut(s) 150
RsaI GTAC 2 cut(s) 302, 544
RsaNI GTAC 2 cut(s) 301, 543
RseI CAYNNNNRTG 1 cut(s) 189
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 4 cut(s) 390, 744, 783, 1089
Sau3AI GATC 7 cut(s) 41, 147, 324, 491, 534, 1060, 1073
Sau96I GGNCC 3 cut(s) 84, 400, 469
SchI GAGTC 2 cut(s) 304, 892
ScrFI CCNGG 3 cut(s) 156, 404, 479
SduI GDGCHC 2 cut(s) 132, 974
SfaNI GCATC 7 cut(s) 207, 499, 663, 712, 763, 838, 988
SfcI CTRYAG 2 cut(s) 314, 822
SinI GGWCC 3 cut(s) 84, 400, 469
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 3 cut(s) 37, 646, 1026
SmoI CTYRAG 3 cut(s) 37, 646, 1026
SphI GCATGC 1 cut(s) 1124
Sse9I AATT 5 cut(s) 249, 354, 549, 747, 864
SsiI CCGC 9 cut(s) 49, 74, 118, 132, 289, 692, 777, 851, 1225
StyD4I CCNGG 3 cut(s) 154, 402, 477
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 982, 1147
TaiI ACGT 1 cut(s) 271
TaqI TCGA 5 cut(s) 146, 181, 348, 507, 1106
TasI AATT 5 cut(s) 249, 354, 549, 747, 864
TauI GCSGC 3 cut(s) 77, 779, 854
TfiI GAWTC 4 cut(s) 209, 337, 433, 1112
Tru1I TTAA 4 cut(s) 390, 744, 783, 1089
Tru9I TTAA 4 cut(s) 390, 744, 783, 1089
TscAI CASTG 2 cut(s) 987, 1075
TseI GCWGC 7 cut(s) 195, 407, 512, 629, 809, 821, 911
TspDTI ATGAA 2 cut(s) 17, 1215
TspGWI ACGGA 3 cut(s) 126, 179, 484
TspRI CASTG 2 cut(s) 987, 1075
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 1070
VpaK11BI GGWCC 3 cut(s) 84, 400, 469
XapI RAATTY 3 cut(s) 249, 747, 864
XceI RCATGY 1 cut(s) 1124
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.