Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004436

Physical Location & Seq

Genomic Coordinates Reverse (-)

11879649 .. 11881783

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAACTTTGGCGTCCTTTTTGTGCCGGAAGCGGAAGCTTTCGTGGTCCAGCGGTGTGGAAAGTTCACCCAGATTCTACCCCCTGGAATCAATTTCTTGGTTCCCTTCGTAGATAAAGTTGCCTACGTGCATTCCTTGAAGGAGGAGGTCATAAGTGTTCCTGACCAGTCTGCTACCACCAAAGACAATGTCGAAATTAGGATTGATGCAGTGCTTTATGTCAAGATTGTGGATGCTTATAAGGCCTCATATGGGGGTGGCTCATATGGGGGTGGAAGTCCTATTGTTTTAGCTATTAACCATGCCCAGGCAGTCATGCGTGACGCAATCGGACTTATGACTCTTGACAGGACATTTGAGGGAAGAAACTACCTGAATGAGAAAATATTGGAGGCACTTAAAGGTAGTGAGAGCGATTGGGGCTTAAGTTGCCTTAGATATGAAATAAGGGATATAACTCCTCCACGTGCGGTGAGGCAATCTATGGAGATGCAAGCTGATGCAGAACGCAAAAAAAGAGCTCTAATTCTTTCTTCCGAAGGAGATAGACAAAAGACCCTTAACAAGGCAGATGGAGACAAGACTAGAGATATTTTAGCAGCAGAAGCCAAAAAGAGAACTGTATGTTTAGTAGGAGAAGGAGAAGCGCAAGCCATCAAGGCTAAAGCAGATGCAGAAGCGCAAGCCATCAGGGCTACAGCAGATGCAGAAGCTTACGCCATCCGTGCTAAAGCAGCTGCAACATCCGAAGGTATTGCTCTCATGTCAAAGAGACTCGAGGAAATTGGGGGTAAAGAGGCTGCCGCTTTGACTATTGCTGAGCAATACGTTAATGCCTTTGGAAATATCGCTAAAGAGGGCACAACTGTGTTGCTTCCATCTGCTGCTTCAGATCCTGCTAGCATGATCTCTCAGGCACTGAGTATCTACAAAAGATTGAGTGACAAACACTCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

319

Amino Acids

34.43

Weight (kDa)

6.38

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	8 - 181	2.6e-29	SPFH domain / Band 7 family
Band_7_C	PF16200	256 - 314	2.8e-23	C-terminal region of band_7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27585 AT5G54100
fragaria_vesca	FvH4_2g05761 FvH4_5g02260 FvH4_7g33130 FvH4_7g33180
malus_domestica	MD01G1230500.v1.1 MD07G1302100.v1.1
prunus_persica	Prupe.2G321200_v2.0.a1
pyrus_communis	pycom01g23850 pycom07g27530
rosa_chinensis	RchiOBHm_Chr1g0383201 RchiOBHm_Chr6g0256651
rosa_laevigata	RLG00000014745 RLG00000026123
rosa_multiflora	Rmu_sc0007173.1_g000029 Rmu_sc0008563.1_g000002 Rmu_sc0021749.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277510
rosa_rugosa	Rorug01G0439500 Rorug05G0565400 Rorug05G0565500
rosa_samantha	Rh1AG465100 Rh1BG422500 Rh1CG435700 Rh1DG455200 Rh6AG083200 Rh6BG077800 Rh6CG072400 Rh6DG069600
rosa_wichuraiana	Rw1G040740 Rw6G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AciI	CCGC	4 cut(s)	32, 52, 470, 804
AclWI	GGATC	1 cut(s)	887
AcuI	CTGAAG	1 cut(s)	873
AcvI	CACGTG	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	3 cut(s)	252, 307, 565
AflII	CTTAAG	1 cut(s)	424
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	82, 306
AleI	CACNNNNGTG	1 cut(s)	866
AluBI	AGCT	6 cut(s)	38, 293, 497, 521, 713, 737
AluI	AGCT	6 cut(s)	38, 293, 497, 521, 713, 737
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	2 cut(s)	570, 766
AlwI	GGATC	1 cut(s)	887
AlwNI	CAGNNNCTG	2 cut(s)	896, 919
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	5 cut(s)	599, 734, 737, 800, 884
ArsI	GACNNNNNNTTYG	4 cut(s)	174, 206, 338, 370
AspLEI	GCGC	2 cut(s)	649, 682
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	58, 484
AsuNHI	GCTAGC	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	776
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	523
BbrPI	CACGTG	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	5 cut(s)	611, 724, 746, 787, 871
BccI	CCATC	5 cut(s)	566, 662, 695, 728, 886
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	2 cut(s)	84, 308
BcoDI	GTCTC	2 cut(s)	570, 766
BfaI	CTAG	2 cut(s)	585, 900
BfmI	CTRYAG	1 cut(s)	696
BfrI	CTTAAG	1 cut(s)	424
BglI	GCCNNNNNGGC	2 cut(s)	659, 692
BisI	GCNGC	6 cut(s)	600, 735, 738, 801, 804, 885
BlpI	GCTNAGC	1 cut(s)	819
BlsI	GCNGC	6 cut(s)	601, 736, 739, 802, 805, 886
Bme1390I	CCNGG	2 cut(s)	84, 308
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	84, 308
BmsI	GCATC	6 cut(s)	196, 223, 480, 490, 661, 694
BmtI	GCTAGC	1 cut(s)	903
Bpu1102I	GCTNAGC	1 cut(s)	819
BsaAI	YACGTR	2 cut(s)	127, 467
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	82, 306
BsaXI	ACNNNNNCTCC	1 cut(s)	935
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 307, 565
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	84, 308
BseDI	CCNNGG	2 cut(s)	82, 306
BseGI	GGATG	3 cut(s)	238, 720, 743
BseLI	CCNNNNNNNGG	3 cut(s)	252, 307, 565
BseMII	CTCAG	3 cut(s)	810, 911, 926
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	3 cut(s)	158, 450, 943
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	5 cut(s)	611, 724, 746, 787, 871
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	252, 307, 565
BsmAI	GTCTC	2 cut(s)	570, 766
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	2 cut(s)	523, 863
Bsp143I	GATC	2 cut(s)	892, 906
Bsp1720I	GCTNAGC	1 cut(s)	819
BspACI	CCGC	4 cut(s)	32, 52, 470, 804
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	3 cut(s)	811, 912, 925
BspHI	TCATGA	1 cut(s)	956
BspLI	GGNNCC	1 cut(s)	102
BspOI	GCTAGC	1 cut(s)	903
BspPI	GGATC	1 cut(s)	887
BspTI	CTTAAG	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	82, 306
BssMI	GATC	2 cut(s)	892, 906
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	84, 308
Bst4CI	ACNGT	2 cut(s)	622, 868
BstACI	GRCGYC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	424
BstBAI	YACGTR	2 cut(s)	127, 467
BstC8I	GCNNGC	4 cut(s)	495, 651, 684, 901
BstDEI	CTNAG	4 cut(s)	434, 819, 912, 920
BstENI	CCTNNNNNAGG	1 cut(s)	563
BstF5I	GGATG	3 cut(s)	238, 720, 743
BstHHI	GCGC	2 cut(s)	649, 682
BstKTI	GATC	2 cut(s)	895, 909
BstMAI	GTCTC	2 cut(s)	570, 766
BstMBI	GATC	2 cut(s)	892, 906
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 420, 429, 605, 659, 692, 725, 734
BstNI	CCWGG	2 cut(s)	84, 308
BstSCI	CCNGG	2 cut(s)	82, 306
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	863
BstV1I	GCAGC	5 cut(s)	611, 724, 746, 787, 871
BstX2I	RGATCY	1 cut(s)	892
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	892
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	238, 720, 743
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	216, 917
Cac8I	GCNNGC	4 cut(s)	495, 651, 684, 901
CaiI	CAGNNNCTG	2 cut(s)	896, 919
CciI	TCATGA	1 cut(s)	956
CfoI	GCGC	2 cut(s)	649, 682
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	332
CviAII	CATG	5 cut(s)	302, 316, 763, 904, 957
DdeI	CTNAG	4 cut(s)	434, 819, 912, 920
DpnI	GATC	2 cut(s)	894, 908
DpnII	GATC	2 cut(s)	892, 906
Ecl136II	GAGCTC	1 cut(s)	521
Eco147I	AGGCCT	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	873
Eco72I	CACGTG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	776
EcoICRI	GAGCTC	1 cut(s)	521
EcoNI	CCTNNNNNAGG	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	82, 306
EcoT38I	GRGCYC	1 cut(s)	523
FaeI	CATG	5 cut(s)	305, 319, 766, 907, 960
FatI	CATG	5 cut(s)	301, 315, 762, 903, 956
FauNDI	CATATG	2 cut(s)	250, 265
Fnu4HI	GCNGC	6 cut(s)	600, 735, 738, 801, 804, 885
FokI	GGATG	3 cut(s)	245, 707, 730
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	6 cut(s)	600, 735, 738, 801, 804, 885
FspBI	CTAG	2 cut(s)	585, 900
GlaI	GCGC	2 cut(s)	648, 681
GluI	GCNGC	6 cut(s)	600, 735, 738, 801, 804, 885
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	2 cut(s)	649, 682
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	5 cut(s)	305, 319, 766, 907, 960
Hin6I	GCGC	2 cut(s)	647, 680
HinP1I	GCGC	2 cut(s)	647, 680
HindIII	AAGCTT	2 cut(s)	36, 711
HinfI	GANTC	4 cut(s)	73, 87, 340, 774
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	58, 484
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	4 cut(s)	332, 538, 748, 892
Hpy188III	TCNNGA	4 cut(s)	161, 223, 344, 957
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	5 cut(s)	115, 133, 533, 632, 743
HpyCH4III	ACNGT	2 cut(s)	622, 868
HpyCH4IV	ACGT	3 cut(s)	126, 466, 828
HpyCH4V	TGCA	7 cut(s)	130, 209, 493, 503, 674, 707, 740
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 420, 429, 605, 659, 692, 725, 734
HpyF3I	CTNAG	4 cut(s)	434, 819, 912, 920
HpySE526I	ACGT	3 cut(s)	126, 466, 828
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	5 cut(s)	305, 319, 766, 907, 960
HspAI	GCGC	2 cut(s)	647, 680
Kzo9I	GATC	2 cut(s)	892, 906
Lsp1109I	GCAGC	5 cut(s)	611, 724, 746, 787, 871
LweI	GCATC	6 cut(s)	196, 223, 480, 490, 661, 694
MaeI	CTAG	2 cut(s)	585, 900
MaeII	ACGT	3 cut(s)	126, 466, 828
MaeIII	GTNAC	2 cut(s)	320, 941
MalI	GATC	2 cut(s)	894, 908
MboI	GATC	2 cut(s)	892, 906
MboII	GAAGA	2 cut(s)	375, 525
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	2 cut(s)	523, 863
MluCI	AATT	4 cut(s)	91, 195, 525, 783
MlyI	GAGTC	2 cut(s)	334, 768
MseI	TTAA	5 cut(s)	297, 399, 425, 561, 831
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	2 cut(s)	52, 737
MspCI	CTTAAG	1 cut(s)	424
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	84, 308
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	84, 308
MwoI	GCNNNNNNNGC	8 cut(s)	242, 420, 429, 605, 659, 692, 725, 734
NdeI	CATATG	2 cut(s)	250, 265
NdeII	GATC	2 cut(s)	892, 906
NheI	GCTAGC	1 cut(s)	899
NlaIII	CATG	5 cut(s)	305, 319, 766, 907, 960
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	2 cut(s)	320, 941
OliI	CACNNNNGTG	1 cut(s)	866
PaeR7I	CTCGAG	1 cut(s)	776
PagI	TCATGA	1 cut(s)	956
PceI	AGGCCT	1 cut(s)	245
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	73, 87
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	6 cut(s)	601, 736, 739, 802, 805, 886
PleI	GAGTC	2 cut(s)	334, 768
PmaCI	CACGTG	1 cut(s)	467
PmlI	CACGTG	1 cut(s)	467
PpsI	GAGTC	2 cut(s)	334, 768
Ppu21I	YACGTR	2 cut(s)	127, 467
PsiI	TTATAA	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	82, 306
PspCI	CACGTG	1 cut(s)	467
PspGI	CCWGG	2 cut(s)	82, 306
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	46
PspXI	VCTCGAGB	1 cut(s)	776
PstNI	CAGNNNCTG	2 cut(s)	896, 919
PsuI	RGATCY	1 cut(s)	892
PsyI	GACNNNGTC	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	737
RseI	CAYNNNNRTG	1 cut(s)	866
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	5 cut(s)	297, 399, 425, 561, 831
SatI	GCNGC	6 cut(s)	600, 735, 738, 801, 804, 885
Sau3AI	GATC	2 cut(s)	892, 906
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	334, 768
ScrFI	CCNGG	2 cut(s)	84, 308
SduI	GDGCHC	2 cut(s)	523, 863
SfaNI	GCATC	6 cut(s)	196, 223, 480, 490, 661, 694
SfcI	CTRYAG	1 cut(s)	696
Sfr274I	CTCGAG	1 cut(s)	776
SinI	GGWCC	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	2 cut(s)	424, 776
SmoI	CTYRAG	2 cut(s)	424, 776
Sse9I	AATT	4 cut(s)	91, 195, 525, 783
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	4 cut(s)	32, 52, 470, 804
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	2 cut(s)	585, 900
SstI	GAGCTC	1 cut(s)	523
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	82, 306
TaaI	ACNGT	2 cut(s)	622, 868
TaiI	ACGT	3 cut(s)	129, 469, 831
TaqI	TCGA	2 cut(s)	192, 777
TasI	AATT	4 cut(s)	91, 195, 525, 783
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	2 cut(s)	73, 87
Tru1I	TTAA	5 cut(s)	297, 399, 425, 561, 831
Tru9I	TTAA	5 cut(s)	297, 399, 425, 561, 831
TscAI	CASTG	2 cut(s)	216, 924
TseFI	GTSAC	2 cut(s)	320, 941
TseI	GCWGC	5 cut(s)	599, 734, 737, 800, 884
Tsp45I	GTSAC	2 cut(s)	320, 941
TspDTI	ATGAA	2 cut(s)	17, 456
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	2 cut(s)	216, 924
Tth111I	GACNNNGTC	1 cut(s)	188
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	46
XagI	CCTNNNNNAGG	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	776
XspI	CTAG	2 cut(s)	585, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.