AT4G27760

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13844059 .. 13846746
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27760.1

Sequence Viewer

Length: 1131 bp
ATGAGTGACGAAACGACGTCATCTCCGTCCCCAGCTCCGGCGAAGAAGAAGCAGAATCTGGGATGGATGGAGTGGATGAGGGGATGGAGCAGTGTTTTCGGGGAGATTCTCTTCCAGAGGATCACAGCTTCTCATTTGGAGAATCCTCTTCCTCTTCCTTCCGTCAACGACCTCACTTGCGTTGTCACTGGCTCCACCAGCGGCATTGGCCGTGAAACCGCGAGGCAGCTTGCAGAAGCTGGTGCTCATGTTGTGATGGCCGTAAGGAACACAAAGGCGGCTCAGGAGCTGATACTGCAATGGCAGAACGAATGGTCTGGTAAAGGTCTCCCACTCAATATTGAGGCAATGGAGATTGATCTACTCTCACTGGATTCTGTCGCGAGATTTGCTGAGGCTTTCAACGCTCGGTTAGGACCTTTGCATGTTCTGATTAACAATGCTGGGATGTTTGCTATGGGAGAGGCGCAAAAATTCTCAGAGGAAGGATATGAGCAGCACATGCAAGTGAATCATTTAGCTCCAGCGCTGCTTTCAGTACTTCTTTTGCCGTCTCTGATCCGAGGCTCTCCTAGCCGAATCATTAATGTGAATTCCGTTATGCATAGTGTCGGTTTTGTTGACCCGGATGACATGAATGTTGTTTCTGGTAGACGTAAGTACTCAAGCCTTATAGGATACTCAAGCAGCAAGCTTGCCCAGATTATGTTTAGTAGCATTCTTTTCAAAAAGCTTCCTCTGGAAACAGGAGTCAGCGTCGTATGTCTATCCCCTGGTGTTGTCCTAACAAATGTTGCCAGGGATCTATCCAGGATTCTTCAAGCTCTTTACGCAGTGATACCTTATTTCATATTTTCACCCCAAGAAGGTTGTAGAAGTTCTCTATTCTCGGCCACAGATCCTCAGATTCCAGAGTACTGGGAAACACTAAAAAACGATGATTGGCCTGTTTGCCCATTCATCTCTCAAGATTGCCGCCCTGCAAATCCTTCCGAAGAAGCACACAACACAGAAACTGCACAGAGAGTGTGGAAAAAGACGTTAGAGCTGGTGGGTCTTCCTCTCGATGCAGTTGAGAAGCTCATAGAAGGGGAAAATATCCAATGCCGGTATGGAGCACAACACGAATAG

Protein Analysis

376

Amino Acids

41.48

Weight (kDa)

5.48

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KR PF08659 59 - 170 6.5e-10 KR domain
adh_short PF00106 60 - 205 7e-28 short chain dehydrogenase
adh_short_C2 PF13561 66 - 214 5.2e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 652
AccII CGCG 2 cut(s) 221, 383
AciI CCGC 4 cut(s) 201, 219, 278, 976
AclWI GGATC 4 cut(s) 128, 553, 810, 893
AcoI YGGCCR 3 cut(s) 208, 258, 891
AcsI RAATTY 2 cut(s) 473, 592
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 3 cut(s) 540, 662, 917
AfeI AGCGCT 1 cut(s) 528
AfiI CCNNNNNNNGG 2 cut(s) 37, 866
AgsI TTSAA 3 cut(s) 403, 727, 821
AjnI CCWGG 3 cut(s) 772, 797, 809
Alw21I GWGCWC 2 cut(s) 247, 1120
Alw26I GTCTC 2 cut(s) 332, 558
AlwI GGATC 4 cut(s) 128, 553, 810, 893
AlwNI CAGNNNCTG 4 cut(s) 58, 239, 289, 1016
Aor51HI AGCGCT 1 cut(s) 528
AoxI GGCC 4 cut(s) 208, 258, 891, 944
ApeKI GCWGC 4 cut(s) 226, 496, 529, 687
ApoI RAATTY 2 cut(s) 473, 592
AseI ATTAAT 1 cut(s) 585
AspLEI GCGC 2 cut(s) 469, 529
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 1 cut(s) 849
AvaII GGWCC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 1049
Bbv12I GWGCWC 2 cut(s) 247, 1120
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 4 cut(s) 238, 508, 516, 699
BccI CCATC 4 cut(s) 57, 61, 78, 250
BceAI ACGGC 3 cut(s) 195, 245, 535
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 3 cut(s) 774, 799, 811
BciVI GTATCC 1 cut(s) 671
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 2 cut(s) 332, 558
BfaI CTAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 530
BfuI GTATCC 1 cut(s) 671
BisI GCNGC 7 cut(s) 202, 227, 279, 497, 530, 688, 976
BlsI GCNGC 7 cut(s) 203, 228, 280, 498, 531, 689, 977
BmcAI AGTACT 3 cut(s) 540, 662, 917
Bme1390I CCNGG 4 cut(s) 626, 774, 799, 811
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 4 cut(s) 626, 774, 799, 811
BmrI ACTGGG 1 cut(s) 928
BmsI GCATC 1 cut(s) 1057
BmuI ACTGGG 1 cut(s) 928
BpiI GAAGAC 1 cut(s) 1049
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 2 cut(s) 282, 393
BpuEI CTTGAG 3 cut(s) 649, 667, 951
BpuMI CCSGG 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 562, 772, 798
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 741, 771
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 866
Bse118I RCCGGY 1 cut(s) 1107
Bse1I ACTGG 3 cut(s) 193, 375, 923
Bse3DI GCAATG 2 cut(s) 305, 354
BseBI CCWGG 3 cut(s) 774, 799, 811
BseDI CCNNGG 3 cut(s) 562, 772, 798
BseGI GGATG 6 cut(s) 68, 72, 81, 89, 453, 634
BseLI CCNNNNNNNGG 2 cut(s) 37, 866
BseMI GCAATG 2 cut(s) 305, 354
BseMII CTCAG 4 cut(s) 296, 384, 492, 917
BseNI ACTGG 3 cut(s) 193, 375, 923
BseXI GCAGC 4 cut(s) 238, 508, 516, 699
BseYI CCCAGC 2 cut(s) 31, 443
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 2 cut(s) 221, 383
BshFI GGCC 4 cut(s) 210, 260, 893, 946
BsiHKAI GWGCWC 2 cut(s) 247, 1120
BsiSI CCGG 3 cut(s) 38, 626, 1108
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 2 cut(s) 37, 866
BsmAI GTCTC 2 cut(s) 332, 558
BsmBI CGTCTC 1 cut(s) 558
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 4 cut(s) 210, 260, 893, 946
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 247, 1120
Bsp143I GATC 5 cut(s) 120, 358, 558, 802, 898
Bsp68I TCGCGA 1 cut(s) 383
BspACI CCGC 4 cut(s) 201, 219, 278, 976
BspANI GGCC 4 cut(s) 210, 260, 893, 946
BspCNI CTCAG 4 cut(s) 295, 385, 491, 916
BspFNI CGCG 2 cut(s) 221, 383
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 4 cut(s) 128, 553, 810, 893
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 2 cut(s) 305, 354
BsrFI RCCGGY 1 cut(s) 1107
BsrI ACTGG 3 cut(s) 193, 375, 923
BssAI RCCGGY 1 cut(s) 1107
BssECI CCNNGG 3 cut(s) 562, 772, 798
BssMI GATC 5 cut(s) 120, 358, 558, 802, 898
BssNI GRCGYC 1 cut(s) 17
Bst2UI CCWGG 3 cut(s) 774, 799, 811
Bst6I CTCTTC 3 cut(s) 116, 153, 159
BstACI GRCGYC 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 502
BstC8I GCNNGC 3 cut(s) 231, 692, 696
BstDEI CTNAG 4 cut(s) 282, 393, 478, 903
BstF5I GGATG 6 cut(s) 68, 72, 81, 89, 453, 634
BstFNI CGCG 2 cut(s) 221, 383
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 2 cut(s) 469, 529
BstKTI GATC 5 cut(s) 123, 361, 561, 805, 901
BstMAI GTCTC 2 cut(s) 332, 558
BstMBI GATC 5 cut(s) 120, 358, 558, 802, 898
BstMWI GCNNNNNNNGC 8 cut(s) 198, 207, 295, 389, 404, 502, 573, 830
BstNI CCWGG 3 cut(s) 774, 799, 811
BstNSI RCATGY 2 cut(s) 428, 505
BstSCI CCNGG 4 cut(s) 624, 772, 797, 809
BstUI CGCG 2 cut(s) 221, 383
BstV1I GCAGC 4 cut(s) 238, 508, 516, 699
BstV2I GAAGAC 1 cut(s) 1049
BstX2I RGATCY 2 cut(s) 802, 898
BstXI CCANNNNNNTGG 1 cut(s) 918
BstYI RGATCY 2 cut(s) 802, 898
BsuI GTATCC 1 cut(s) 671
BsuRI GGCC 4 cut(s) 210, 260, 893, 946
BtsCI GGATG 6 cut(s) 68, 72, 81, 89, 453, 634
BtsI GCAGTG 2 cut(s) 97, 840
BtsIMutI CAGTG 4 cut(s) 97, 186, 368, 840
BtuMI TCGCGA 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 231, 692, 696
CaiI CAGNNNCTG 4 cut(s) 58, 239, 289, 1016
CfoI GCGC 2 cut(s) 469, 529
Cfr10I RCCGGY 1 cut(s) 1107
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 1 cut(s) 745
Csp6I GTAC 3 cut(s) 539, 661, 916
CviAII CATG 4 cut(s) 248, 425, 502, 634
CviQI GTAC 3 cut(s) 539, 661, 916
DdeI CTNAG 4 cut(s) 282, 393, 478, 903
DpnI GATC 5 cut(s) 122, 360, 560, 804, 900
DpnII GATC 5 cut(s) 120, 358, 558, 802, 898
EaeI YGGCCR 3 cut(s) 208, 258, 891
Eam1104I CTCTTC 3 cut(s) 116, 153, 159
EarI CTCTTC 3 cut(s) 116, 153, 159
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 416
Eco47III AGCGCT 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 3 cut(s) 772, 797, 809
EcoT22I ATGCAT 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 4 cut(s) 251, 428, 505, 637
FaqI GGGAC 1 cut(s) 13
FatI CATG 4 cut(s) 247, 424, 501, 633
FblI GTMKAC 1 cut(s) 652
Fnu4HI GCNGC 7 cut(s) 202, 227, 279, 497, 530, 688, 976
FokI GGATG 6 cut(s) 75, 79, 88, 96, 460, 641
Fsp4HI GCNGC 7 cut(s) 202, 227, 279, 497, 530, 688, 976
FspBI CTAG 1 cut(s) 573
GlaI GCGC 2 cut(s) 468, 528
GluI GCNGC 7 cut(s) 202, 227, 279, 497, 530, 688, 976
GsaI CCCAGC 2 cut(s) 35, 447
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 4 cut(s) 210, 260, 893, 946
HapII CCGG 3 cut(s) 38, 626, 1108
HgaI GACGC 1 cut(s) 745
HhaI GCGC 2 cut(s) 469, 529
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 4 cut(s) 251, 428, 505, 637
Hin6I GCGC 2 cut(s) 467, 527
HinP1I GCGC 2 cut(s) 467, 527
HincII GTYRAC 2 cut(s) 166, 622
HindII GTYRAC 2 cut(s) 166, 622
HindIII AAGCTT 2 cut(s) 692, 731
HinfI GANTC 9 cut(s) 55, 106, 142, 374, 511, 579, 750, 814, 907
HpaII CCGG 3 cut(s) 38, 626, 1108
HphI GGTGA 1 cut(s) 849
Hpy166II GTNNAC 3 cut(s) 166, 622, 653
Hpy188I TCNGA 6 cut(s) 432, 481, 558, 563, 906, 994
Hpy188III TCNNGA 7 cut(s) 115, 284, 382, 740, 911, 968, 1064
Hpy8I GTNNAC 3 cut(s) 166, 622, 653
Hpy99I CGWCG 2 cut(s) 19, 761
HpyAV CCTTC 5 cut(s) 168, 479, 860, 999, 1082
HpyCH4IV ACGT 3 cut(s) 17, 655, 1040
HpyCH4V TGCA 8 cut(s) 233, 298, 424, 505, 604, 983, 1019, 1070
HpyF10VI GCNNNNNNNGC 8 cut(s) 198, 207, 295, 389, 404, 502, 573, 830
HpyF3I CTNAG 4 cut(s) 282, 393, 478, 903
HpySE526I ACGT 3 cut(s) 17, 655, 1040
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 4 cut(s) 251, 428, 505, 637
HspAI GCGC 2 cut(s) 467, 527
Kzo9I GATC 5 cut(s) 120, 358, 558, 802, 898
LmnI GCTCC 6 cut(s) 40, 87, 197, 286, 526, 1115
Lsp1109I GCAGC 4 cut(s) 238, 508, 516, 699
LweI GCATC 1 cut(s) 1057
MaeI CTAG 1 cut(s) 573
MaeII ACGT 3 cut(s) 17, 655, 1040
MaeIII GTNAC 2 cut(s) 5, 184
MalI GATC 5 cut(s) 122, 360, 560, 804, 900
MboI GATC 5 cut(s) 120, 358, 558, 802, 898
MboII GAAGA 8 cut(s) 55, 58, 103, 140, 146, 809, 1007, 1049
MflI RGATCY 2 cut(s) 802, 898
MhlI GDGCHC 2 cut(s) 247, 1120
MluCI AATT 2 cut(s) 473, 592
MlyI GAGTC 1 cut(s) 759
Mph1103I ATGCAT 1 cut(s) 606
MseI TTAA 2 cut(s) 435, 585
MslI CAYNNNNRTG 2 cut(s) 506, 587
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 3 cut(s) 38, 626, 1108
MspR9I CCNGG 4 cut(s) 626, 774, 799, 811
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 3 cut(s) 774, 799, 811
MvnI CGCG 2 cut(s) 221, 383
MwoI GCNNNNNNNGC 8 cut(s) 198, 207, 295, 389, 404, 502, 573, 830
NciI CCSGG 1 cut(s) 626
NdeII GATC 5 cut(s) 120, 358, 558, 802, 898
NlaIII CATG 4 cut(s) 251, 428, 505, 637
NlaIV GGNNCC 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 869
NmuCI GTSAC 2 cut(s) 5, 184
NruI TCGCGA 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 2 cut(s) 428, 505
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PctI GAATGC 1 cut(s) 717
PfeI GAWTC 8 cut(s) 55, 106, 142, 374, 511, 579, 814, 907
PfoI TCCNGGA 1 cut(s) 809
PkrI GCNGC 7 cut(s) 203, 228, 280, 498, 531, 689, 977
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
PpuMI RGGWCCY 1 cut(s) 416
PshBI ATTAAT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 416
Psp6I CCWGG 3 cut(s) 772, 797, 809
PspFI CCCAGC 2 cut(s) 31, 443
PspGI CCWGG 3 cut(s) 772, 797, 809
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 416
PspPPI RGGWCCY 1 cut(s) 416
PstNI CAGNNNCTG 4 cut(s) 58, 239, 289, 1016
PsuI RGATCY 2 cut(s) 802, 898
RruI TCGCGA 1 cut(s) 383
RsaI GTAC 3 cut(s) 540, 662, 917
RsaNI GTAC 3 cut(s) 539, 661, 916
RseI CAYNNNNRTG 2 cut(s) 506, 587
SaqAI TTAA 2 cut(s) 435, 585
SatI GCNGC 7 cut(s) 202, 227, 279, 497, 530, 688, 976
Sau3AI GATC 5 cut(s) 120, 358, 558, 802, 898
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 3 cut(s) 540, 662, 917
SchI GAGTC 1 cut(s) 759
ScrFI CCNGG 4 cut(s) 626, 774, 799, 811
SduI GDGCHC 2 cut(s) 247, 1120
SfaNI GCATC 1 cut(s) 1057
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 506, 587
SmlI CTYRAG 3 cut(s) 664, 682, 966
SmoI CTYRAG 3 cut(s) 664, 682, 966
Sse9I AATT 2 cut(s) 473, 592
SsiI CCGC 4 cut(s) 201, 219, 278, 976
SspI AATATT 1 cut(s) 340
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 4 cut(s) 624, 772, 797, 809
TaiI ACGT 3 cut(s) 20, 658, 1043
TaqI TCGA 1 cut(s) 1065
TasI AATT 2 cut(s) 473, 592
TatI WGTACW 3 cut(s) 538, 660, 915
TauI GCSGC 3 cut(s) 204, 281, 978
TfiI GAWTC 8 cut(s) 55, 106, 142, 374, 511, 579, 814, 907
Tru1I TTAA 2 cut(s) 435, 585
Tru9I TTAA 2 cut(s) 435, 585
TscAI CASTG 4 cut(s) 97, 193, 375, 840
TseFI GTSAC 2 cut(s) 5, 184
TseI GCWGC 4 cut(s) 226, 496, 529, 687
Tsp45I GTSAC 2 cut(s) 5, 184
TspDTI ATGAA 3 cut(s) 650, 838, 949
TspGWI ACGGA 3 cut(s) 15, 151, 586
TspRI CASTG 4 cut(s) 97, 193, 375, 840
VpaK11BI GGWCC 1 cut(s) 416
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 2 cut(s) 473, 592
XceI RCATGY 2 cut(s) 428, 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 1109
XmiI GTMKAC 1 cut(s) 652
XspI CTAG 1 cut(s) 573
ZraI GACGTC 1 cut(s) 18
ZrmI AGTACT 3 cut(s) 540, 662, 917
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.