Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

32306901 .. 32310635

Gene Structure 3735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1244800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCGGCTGCGGTGGCGTCGTCAAATCCGAAAGAGGAAGTGAAGACGAAGAATAAGAAGGAGGGATTGGGGTGGATAGAGTGGATGAGGGGGTGGTTGTATGTGGTCTACGAGATGCTGTTCCAGAGAATCACCGCCAGCCACTTGCAAAACCCCATGCCTTTGCCTCCCGTCAACGATCTCACTTGCATTGTCACTGGATCCACCAGCGGAATCGGCCGCGAAATCGCCAGGCAGTTAGCGGAATCAGGGGCGCATGTTATAATGGCGGTGAGGAATACGAAAGCGGCTAATGAGCTGATCCAGAAGTGGCAGAATGAATGGTCTGGAATGGGACTTCCTCTGAATATTGAGGTAATGGAACTTGATCTGCTTTCATTGGATTCTGTCGTGAGATTTGCCGAAGCATGGAATGCACGTTTAGGCCCTCTTCATGTTCTTATCAACAATGCTGGGATATTTTCAATTGGAGAGCCGCAAAAGTTTTCAAAAGATGGTTACGAAGAACACTTGCAAGTGAATCATCTGGCTCCAGCACTGCTATCCGTCTTGCTATTGCCTTCCCTCATTAGAGGCTCTCCTAGTCGAATTGTTAACGTGAATTCTGTTATGCATTATGTTGGCTTTGTTGACACAGAAGACATGAACGTTGTTTCCGGGAAAAGAAAATTTACAAGCTTAGTGGGTTACACAAGCAGCAAGCTGGCACAGATTATGTTTAGTAGTGTCCTACATAAGCGTCTGCCTGCTGAATCTGGCATTAGTGTAGTATGCGTTTCACCTGGAATTGTCCAGACTAATGTTGCAAGGGATCTACCCAAGATTGTTCAGGCTGCTTATCATCTAGTACCTTATTTTATGTTTAGTGCTCAAGAAGGTTCTAGGAGTGCTCTGTTTGCAGCCACTGATCCCCAGGTTCCCGAGTACTGTGAATTGTTGAAAACGGATGATTTTCCTGTTTGTGCCTTTATTTCTCAAGATTGCCGTCCAACGAATCCTTCAGAAGAATCGCATAATGTTGAAACTTCTCACGAGGTGTGGGAGAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCGGTGGACAGGCTTATAGAAGGGGAAGAAGTTGCAAGCAGATACGGGGCTCATGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

380

Amino Acids

41.86

Weight (kDa)

5.53

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	62 - 171	7.2e-10	KR domain
adh_short	PF00106	63 - 207	5.4e-26	short chain dehydrogenase
adh_short_C2	PF13561	69 - 274	7.8e-18	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	217 - 272	9.7e-07	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	222
AclI	AACGTT	1 cut(s)	648
AclWI	GGATC	5 cut(s)	195, 208, 295, 819, 902
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	601, 668
AcuI	CTGAAG	1 cut(s)	984
AcyI	GRCGYC	1 cut(s)	17
AdeI	CACNNNGTG	1 cut(s)	1036
AfaI	GTAC	2 cut(s)	849, 926
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	4 cut(s)	465, 489, 940, 1022
AjnI	CCWGG	3 cut(s)	230, 781, 912
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 982, 1014
AloI	GAACNNNNNNTCC	2 cut(s)	638, 670
AluBI	AGCT	3 cut(s)	298, 678, 703
AluI	AGCT	3 cut(s)	298, 678, 703
Alw21I	GWGCWC	2 cut(s)	871, 892
AlwI	GGATC	5 cut(s)	195, 208, 295, 819, 902
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	920
AoxI	GGCC	3 cut(s)	217, 424, 1063
ApeKI	GCWGC	4 cut(s)	8, 696, 833, 899
ApoI	RAATTY	2 cut(s)	601, 668
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	3 cut(s)	124, 283, 771
AvaI	CYCGRG	1 cut(s)	920
BamHI	GGATCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	1129
BauI	CACGAG	1 cut(s)	1031
BbsI	GAAGAC	3 cut(s)	50, 645, 1052
Bbv12I	GWGCWC	2 cut(s)	871, 892
BbvI	GCAGC	3 cut(s)	708, 820, 911
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	969
BciT130I	CCWGG	3 cut(s)	232, 783, 914
BcnI	CCSGG	1 cut(s)	658
BfaI	CTAG	3 cut(s)	582, 845, 882
BisI	GCNGC	8 cut(s)	6, 9, 220, 288, 476, 697, 834, 900
BlsI	GCNGC	8 cut(s)	7, 10, 221, 289, 477, 698, 835, 901
BmcAI	AGTACT	1 cut(s)	926
Bme1390I	CCNGG	4 cut(s)	232, 658, 783, 914
BmeT110I	CYCGRG	1 cut(s)	920
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	3 cut(s)	202, 531, 918
BmrFI	CCNGG	4 cut(s)	232, 658, 783, 914
BmsI	GCATC	2 cut(s)	105, 1066
BpiI	GAAGAC	3 cut(s)	50, 645, 1052
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	855, 960
BpuMI	CCSGG	1 cut(s)	658
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	912
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	3 cut(s)	232, 783, 914
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	2 cut(s)	90, 952
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	202
BseX3I	CGGCCG	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	708, 820, 911
BseYI	CCCAGC	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	219, 426, 1065
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	871, 892
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	219, 426, 1065
BsoBI	CYCGRG	1 cut(s)	920
Bsp1286I	GDGCHC	3 cut(s)	871, 892, 1129
Bsp143I	GATC	6 cut(s)	178, 200, 300, 367, 811, 907
BspANI	GGCC	3 cut(s)	219, 426, 1065
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	202, 531, 918
BspPI	GGATC	5 cut(s)	195, 208, 295, 819, 902
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	6 cut(s)	178, 200, 300, 367, 811, 907
BssNI	GRCGYC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	1031
Bst2BI	CACGAG	1 cut(s)	1031
Bst2UI	CCWGG	3 cut(s)	232, 783, 914
Bst4CI	ACNGT	1 cut(s)	929
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	5 cut(s)	139, 701, 705, 747, 1114
BstDEI	CTNAG	1 cut(s)	679
BstF5I	GGATG	2 cut(s)	90, 952
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	6 cut(s)	181, 203, 303, 370, 814, 910
BstMBI	GATC	6 cut(s)	178, 200, 300, 367, 811, 907
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 216, 413, 896
BstNI	CCWGG	3 cut(s)	232, 783, 914
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	4 cut(s)	230, 656, 781, 912
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	708, 820, 911
BstV2I	GAAGAC	3 cut(s)	50, 645, 1052
BstX2I	RGATCY	2 cut(s)	200, 811
BstYI	RGATCY	2 cut(s)	200, 811
BstZI	CGGCCG	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	219, 426, 1065
BtsCI	GGATG	2 cut(s)	90, 952
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	3 cut(s)	195, 536, 903
Cac8I	GCNNGC	5 cut(s)	139, 701, 705, 747, 1114
CaiI	CAGNNNCTG	1 cut(s)	905
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	425
CseI	GACGC	2 cut(s)	6, 728
Csp6I	GTAC	2 cut(s)	848, 925
CspCI	CAANNNNNGTGG	2 cut(s)	663, 698
CviAII	CATG	6 cut(s)	157, 257, 408, 434, 643, 1130
CviQI	GTAC	2 cut(s)	848, 925
DdeI	CTNAG	1 cut(s)	679
DpnI	GATC	6 cut(s)	180, 202, 302, 369, 813, 909
DpnII	GATC	6 cut(s)	178, 200, 300, 367, 811, 907
DraIII	CACNNNGTG	1 cut(s)	1036
EaeI	YGGCCR	1 cut(s)	217
EagI	CGGCCG	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	1129
Eco52I	CGGCCG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	984
Eco88I	CYCGRG	1 cut(s)	920
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	3 cut(s)	230, 781, 912
EcoT22I	ATGCAT	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	1129
FaeI	CATG	6 cut(s)	160, 260, 411, 437, 646, 1133
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	6 cut(s)	156, 256, 407, 433, 642, 1129
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	8 cut(s)	6, 9, 220, 288, 476, 697, 834, 900
FokI	GGATG	2 cut(s)	97, 959
FriOI	GRGCYC	1 cut(s)	1129
Fsp4HI	GCNGC	8 cut(s)	6, 9, 220, 288, 476, 697, 834, 900
FspBI	CTAG	3 cut(s)	582, 845, 882
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	8 cut(s)	6, 9, 220, 288, 476, 697, 834, 900
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	219, 426, 1065
HapII	CCGG	1 cut(s)	657
HgaI	GACGC	2 cut(s)	6, 728
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	6 cut(s)	160, 260, 411, 437, 646, 1133
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	3 cut(s)	175, 595, 631
HindII	GTYRAC	3 cut(s)	175, 595, 631
HindIII	AAGCTT	1 cut(s)	676
HinfI	GANTC	8 cut(s)	129, 213, 245, 383, 520, 752, 994, 1007
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	3 cut(s)	124, 283, 771
Hpy166II	GTNNAC	5 cut(s)	109, 175, 595, 631, 1084
Hpy188I	TCNGA	4 cut(s)	30, 345, 1003, 1075
Hpy188III	TCNNGA	9 cut(s)	124, 304, 327, 391, 793, 872, 920, 977, 1031
Hpy8I	GTNNAC	5 cut(s)	109, 175, 595, 631, 1084
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	7 cut(s)	52, 570, 869, 1008, 1076, 1080, 1091
HpyCH4III	ACNGT	1 cut(s)	929
HpyCH4IV	ACGT	3 cut(s)	418, 597, 648
HpyCH4V	TGCA	8 cut(s)	148, 189, 416, 514, 613, 806, 899, 1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 216, 413, 896
HpyF3I	CTNAG	1 cut(s)	679
HpySE526I	ACGT	3 cut(s)	418, 597, 648
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	6 cut(s)	160, 260, 411, 437, 646, 1133
HspAI	GCGC	1 cut(s)	254
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	6 cut(s)	178, 200, 300, 367, 811, 907
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	3 cut(s)	708, 820, 911
LweI	GCATC	2 cut(s)	105, 1066
MaeI	CTAG	3 cut(s)	582, 845, 882
MaeII	ACGT	3 cut(s)	418, 597, 648
MaeIII	GTNAC	3 cut(s)	193, 497, 686
MalI	GATC	6 cut(s)	180, 202, 302, 369, 813, 909
MboI	GATC	6 cut(s)	178, 200, 300, 367, 811, 907
MboII	GAAGA	8 cut(s)	55, 61, 422, 515, 650, 1016, 1057, 1115
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	2 cut(s)	200, 811
MhlI	GDGCHC	3 cut(s)	871, 892, 1129
MluCI	AATT	6 cut(s)	465, 588, 601, 668, 786, 932
MmeI	TCCRAC	1 cut(s)	1013
Mph1103I	ATGCAT	1 cut(s)	615
MseI	TTAA	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	4 cut(s)	232, 658, 783, 914
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	3 cut(s)	232, 783, 914
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	14, 216, 413, 896
NciI	CCSGG	1 cut(s)	658
NdeII	GATC	6 cut(s)	178, 200, 300, 367, 811, 907
NlaIII	CATG	6 cut(s)	160, 260, 411, 437, 646, 1133
NlaIV	GGNNCC	3 cut(s)	202, 531, 918
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	8 cut(s)	129, 213, 245, 383, 520, 752, 994, 1007
PfoI	TCCNGGA	1 cut(s)	656
PkrI	GCNGC	8 cut(s)	7, 10, 221, 289, 477, 698, 835, 901
PsiI	TTATAA	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	648
Psp6I	CCWGG	3 cut(s)	230, 781, 912
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	3 cut(s)	230, 781, 912
PspN4I	GGNNCC	3 cut(s)	202, 531, 918
PspPI	GGNCC	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	2 cut(s)	200, 811
RsaI	GTAC	2 cut(s)	849, 926
RsaNI	GTAC	2 cut(s)	848, 925
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	8 cut(s)	6, 9, 220, 288, 476, 697, 834, 900
Sau3AI	GATC	6 cut(s)	178, 200, 300, 367, 811, 907
Sau96I	GGNCC	1 cut(s)	425
ScaI	AGTACT	1 cut(s)	926
ScrFI	CCNGG	4 cut(s)	232, 658, 783, 914
SduI	GDGCHC	3 cut(s)	871, 892, 1129
SfaNI	GCATC	2 cut(s)	105, 1066
SmlI	CTYRAG	2 cut(s)	870, 975
SmoI	CTYRAG	2 cut(s)	870, 975
Sse9I	AATT	6 cut(s)	465, 588, 601, 668, 786, 932
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	3 cut(s)	582, 845, 882
StyD4I	CCNGG	4 cut(s)	230, 656, 781, 912
TaaI	ACNGT	1 cut(s)	929
TaiI	ACGT	3 cut(s)	421, 600, 651
TaqI	TCGA	1 cut(s)	586
TasI	AATT	6 cut(s)	465, 588, 601, 668, 786, 932
TatI	WGTACW	1 cut(s)	924
TauI	GCSGC	4 cut(s)	8, 222, 290, 478
TfiI	GAWTC	8 cut(s)	129, 213, 245, 383, 520, 752, 994, 1007
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	3 cut(s)	202, 543, 910
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	4 cut(s)	8, 696, 833, 899
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	4 cut(s)	333, 366, 422, 659
TspGWI	ACGGA	2 cut(s)	535, 959
TspRI	CASTG	3 cut(s)	202, 543, 910
XapI	RAATTY	2 cut(s)	601, 668
XceI	RCATGY	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	3 cut(s)	582, 845, 882
ZrmI	AGTACT	1 cut(s)	926
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.