Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

22817116 .. 22821611

Gene Structure 4496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31670.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCAACGACATTATCTGATTTGAAAGAGGAAGTGAAGAAGAAGAAGGAGGGATTGGGATGGATAGAGTGGTTGAGAGGTTGGTTCTATGTGGTGTATGAGATGTTGTTCCAAAGAATCACTGCCAGCCATTTGCAAAACCCAATGCCTTTGCCTCCTGTCAATGATCTCACATGCATTGTCACTGGATCCACTAGCGGTATTGGCCGTGAAATTGCCAGGCAGTTGGCGGAGGCCGGTGCACATGTTGTAATGGCAGTGAGAAACACCAAAGCAGCTGAGGAGCTGATCCAGAAGTGGCAGAATGAATGGTCAGGAATGGGCCTTCCTCTCAATATCGAGGTGATGGAACTTGATCTACTCTCCTTGGATTCTGTTGTGAGATTTTGTGAAGCTTGGAATGCACGATTGGGATCTCTGCATGTTCTTATCAACAATGCTGGGATATTTTCAATTGGAGAGCCACAAAAATTTTCAAAAGATGGGTATGAAGAGCACTTACAAGTTAATCATCTGGCTCCAGCACTGCTATCAGTATTGCTACTGCCATCCCTTATTAGAGGCTCTCCAAGTCGAATTGTTAATGTCAATTCCGTTATGCATTATGTTGGGTTCGTTGACACAGACGACATGAACGTTGTTTCTGGGAAAAGAAAGTATACAAGCTTAGTGGGTTATTCAAGCAGCAAGCTCGCACAGATCATGTTTAGTAGTGTCTTACATAAGCGGCTGCCTGCTGAAGCTGGTATTTCTGTAGCATGTGTTTCTCCTGGTGTTGTCCAGACAAACGTTGTAAGTATCTTGATGTGTTCTCCCATCTTGTTACATTGGAAAAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

281

Amino Acids

31.04

Weight (kDa)

7.73

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	58 - 168	5.9e-09	KR domain
adh_short	PF00106	59 - 203	1.9e-26	short chain dehydrogenase
adh_short_C2	PF13561	65 - 271	8.3e-19	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	213 - 266	8.1e-07	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	659
AciI	CCGC	3 cut(s)	198, 230, 727
AclI	AACGTT	2 cut(s)	636, 789
AclWI	GGATC	4 cut(s)	183, 196, 283, 421
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	759
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	25, 453, 477, 681
AjnI	CCWGG	2 cut(s)	218, 769
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 392, 424
AluBI	AGCT	6 cut(s)	278, 286, 395, 666, 691, 743
AluI	AGCT	6 cut(s)	278, 286, 395, 666, 691, 743
Alw21I	GWGCWC	2 cut(s)	244, 498
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	4 cut(s)	183, 196, 283, 421
AoxI	GGCC	3 cut(s)	205, 234, 322
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	275, 684, 730
ApoI	RAATTY	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	188
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
Bbv12I	GWGCWC	2 cut(s)	244, 498
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	287, 696, 717
BccI	CCATC	5 cut(s)	54, 340, 476, 556, 824
BceAI	ACGGC	1 cut(s)	192
BcgI	CGANNNNNNTGC	2 cut(s)	673, 707
BciT130I	CCWGG	2 cut(s)	220, 771
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	753
BisI	GCNGC	4 cut(s)	276, 685, 728, 731
BlsI	GCNGC	4 cut(s)	277, 686, 729, 732
Bme1390I	CCNGG	2 cut(s)	220, 771
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	190, 519
BmrFI	CCNGG	2 cut(s)	220, 771
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	220, 771
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	3 cut(s)	65, 548, 843
BseJI	GATNNNNATC	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	3 cut(s)	287, 696, 717
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	3 cut(s)	207, 236, 324
BsiHKAI	GWGCWC	2 cut(s)	244, 498
BsiSI	CCGG	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	207, 236, 324
Bsp1286I	GDGCHC	2 cut(s)	244, 498
Bsp143I	GATC	6 cut(s)	166, 188, 288, 355, 413, 699
BspACI	CCGC	3 cut(s)	198, 230, 727
BspANI	GGCC	3 cut(s)	207, 236, 324
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	190, 519
BspPI	GGATC	4 cut(s)	183, 196, 283, 421
BspQI	GCTCTTC	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	6 cut(s)	166, 188, 288, 355, 413, 699
BssNAI	GTATAC	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	220, 771
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	4 cut(s)	127, 689, 693, 735
BstDEI	CTNAG	2 cut(s)	279, 667
BstF5I	GGATG	3 cut(s)	65, 548, 843
BstKTI	GATC	6 cut(s)	169, 191, 291, 358, 416, 702
BstMBI	GATC	6 cut(s)	166, 188, 288, 355, 413, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 401
BstNI	CCWGG	2 cut(s)	220, 771
BstNSI	RCATGY	4 cut(s)	177, 248, 425, 762
BstSCI	CCNGG	2 cut(s)	218, 769
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	287, 696, 717
BstX2I	RGATCY	2 cut(s)	188, 413
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	2 cut(s)	188, 413
BstZ17I	GTATAC	1 cut(s)	660
BsuRI	GGCC	3 cut(s)	207, 236, 324
BtsCI	GGATG	3 cut(s)	65, 548, 843
BtsI	GCAGTG	3 cut(s)	120, 264, 524
BtsIMutI	CAGTG	4 cut(s)	120, 183, 264, 524
Cac8I	GCNNGC	4 cut(s)	127, 689, 693, 735
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	6 cut(s)	174, 245, 422, 631, 703, 759
DdeI	CTNAG	2 cut(s)	279, 667
DpnI	GATC	6 cut(s)	168, 190, 290, 357, 415, 701
DpnII	GATC	6 cut(s)	166, 188, 288, 355, 413, 699
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	759
EcoRII	CCWGG	2 cut(s)	218, 769
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	2 cut(s)	179, 603
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	6 cut(s)	177, 248, 425, 634, 706, 762
FatI	CATG	6 cut(s)	173, 244, 421, 630, 702, 758
FblI	GTMKAC	1 cut(s)	659
Fnu4HI	GCNGC	4 cut(s)	276, 685, 728, 731
FokI	GGATG	2 cut(s)	72, 535
Fsp4HI	GCNGC	4 cut(s)	276, 685, 728, 731
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	4 cut(s)	276, 685, 728, 731
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	207, 236, 324
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	6 cut(s)	177, 248, 425, 634, 706, 762
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	2 cut(s)	393, 664
HinfI	GANTC	2 cut(s)	117, 371
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	3 cut(s)	242, 619, 660
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	4 cut(s)	292, 315, 781, 802
Hpy8I	GTNNAC	3 cut(s)	242, 619, 660
HpyAV	CCTTC	2 cut(s)	40, 335
HpyCH4IV	ACGT	2 cut(s)	636, 789
HpyCH4V	TGCA	6 cut(s)	136, 177, 242, 404, 421, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 401
HpyF3I	CTNAG	2 cut(s)	279, 667
HpySE526I	ACGT	2 cut(s)	636, 789
Hsp92II	CATG	6 cut(s)	177, 248, 425, 634, 706, 762
Kzo9I	GATC	6 cut(s)	166, 188, 288, 355, 413, 699
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	283, 523
Lsp1109I	GCAGC	3 cut(s)	287, 696, 717
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	2 cut(s)	636, 789
MaeIII	GTNAC	2 cut(s)	181, 822
MalI	GATC	6 cut(s)	168, 190, 290, 357, 415, 701
MboI	GATC	6 cut(s)	166, 188, 288, 355, 413, 699
MboII	GAAGA	4 cut(s)	49, 52, 55, 503
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	2 cut(s)	188, 413
MhlI	GDGCHC	2 cut(s)	244, 498
MluCI	AATT	5 cut(s)	213, 453, 470, 576, 589
MnlI	CCTC	9 cut(s)	22, 43, 71, 165, 226, 274, 334, 339, 554
Mph1103I	ATGCAT	2 cut(s)	179, 603
MseI	TTAA	2 cut(s)	507, 582
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	220, 771
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	220, 771
MwoI	GCNNNNNNNGC	2 cut(s)	204, 401
NdeII	GATC	6 cut(s)	166, 188, 288, 355, 413, 699
NlaIII	CATG	6 cut(s)	177, 248, 425, 634, 706, 762
NlaIV	GGNNCC	2 cut(s)	190, 519
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	2 cut(s)	179, 603
NspI	RCATGY	4 cut(s)	177, 248, 425, 762
PciI	ACATGT	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	117, 371
PkrI	GCNGC	4 cut(s)	277, 686, 729, 732
PscI	ACATGT	1 cut(s)	244
Psp1406I	AACGTT	2 cut(s)	636, 789
Psp6I	CCWGG	2 cut(s)	218, 769
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	2 cut(s)	218, 769
PspN4I	GGNNCC	2 cut(s)	190, 519
PspPI	GGNCC	1 cut(s)	322
PsrI	GAACNNNNNNTAC	2 cut(s)	342, 374
PsuI	RGATCY	2 cut(s)	188, 413
PvuII	CAGCTG	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	507, 582
SatI	GCNGC	4 cut(s)	276, 685, 728, 731
Sau3AI	GATC	6 cut(s)	166, 188, 288, 355, 413, 699
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	220, 771
SduI	GDGCHC	2 cut(s)	244, 498
SfcI	CTRYAG	1 cut(s)	753
Sse9I	AATT	5 cut(s)	213, 453, 470, 576, 589
SsiI	CCGC	3 cut(s)	198, 230, 727
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	218, 769
StyI	CCWWGG	1 cut(s)	366
TaiI	ACGT	2 cut(s)	639, 792
TaqI	TCGA	2 cut(s)	339, 574
TasI	AATT	5 cut(s)	213, 453, 470, 576, 589
TauI	GCSGC	1 cut(s)	730
TfiI	GAWTC	2 cut(s)	117, 371
Tru1I	TTAA	2 cut(s)	507, 582
Tru9I	TTAA	2 cut(s)	507, 582
TscAI	CASTG	4 cut(s)	127, 190, 264, 531
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	275, 684, 730
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	321, 504, 647
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	4 cut(s)	127, 190, 264, 531
VneI	GTGCAC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	4 cut(s)	177, 248, 425, 762
XmiI	GTMKAC	1 cut(s)	659
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	2 cut(s)	179, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.