Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Forward (+)

18677260 .. 18681132

Gene Structure 3873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTGTTCCAGAGAATCACTGCCAGCCATTTGCTAAACCCAATGCCTTTGCCTCCTGTCAACGATCTCACATGCATTGTCACTGGATCCACTAGCGGTATCGGCCGCGAAATCGCCAGGCAGTTGGCGGAGTCTGGTGCACATGTTGTAATGGCAGTGAGAAACACCAAAGCAGCTAAGGAGCTGATCCAGAAGTGGCAGAATGAATGGTCAGGAATGGGCCTTCCTCTCAATATCGAGGTGATGGAACTTGATCCACTCTCCTTGGATTCTGTTGTGAGATTTTCTGAAGCGTGGAATGCACGATTGGGACCTCTGCACGTTCTTATCAACAATGCTGGGATATTTTCCATTGGAGGTTCGAGGAGTGCTCTCTTTGCAGCCACTGATCCTCAGGTTCCAGAGTACTGTCAATTGTTGAAATCAGATGACTTTCCTGTTTGCGCTTTCATTTCTCAAGATTGCAATCCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTCACACAAAATATGGGAAAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCTGTGGGGAAGAAGTTGCATGCAGATGTGGGGCTCATAATGAGTAACCTTATTCCATGGCAAAGGTCTGTGCCCAATATAACGAAGATTGTTTTACTTTTTATACTTGAATGCAGAGAAATGCCATTCAGTTTTGCGATGGAAGGAATGGGTGAGTACCACAAGCATTCTGAATTTCTGATTGTGGTAGGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

252

Amino Acids

27.74

Weight (kDa)

5.47

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	24 - 116	5.5e-08	KR domain
adh_short	PF00106	25 - 121	1.9e-16	short chain dehydrogenase
adh_short_C2	PF13561	31 - 117	1.2e-09	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	3 cut(s)	96, 106, 128
AclWI	GGATC	5 cut(s)	81, 94, 181, 248, 383
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	2 cut(s)	309, 504
AfaI	GTAC	2 cut(s)	407, 716
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	421, 668
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	4 cut(s)	290, 322, 463, 495
AluBI	AGCT	3 cut(s)	176, 184, 491
AluI	AGCT	3 cut(s)	176, 184, 491
Alw21I	GWGCWC	2 cut(s)	142, 373
Alw26I	GTCTC	1 cut(s)	497
Alw44I	GTGCAC	1 cut(s)	138
AlwI	GGATC	5 cut(s)	81, 94, 181, 248, 383
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	3 cut(s)	103, 220, 544
ApaLI	GTGCAC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	173, 380
ApoI	RAATTY	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	220, 311
AsuHPI	GGTGA	2 cut(s)	253, 722
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	393
BaeGI	GKGCMC	2 cut(s)	142, 633
BamHI	GGATCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	142, 373
BbvI	GCAGC	2 cut(s)	185, 392
BccI	CCATC	2 cut(s)	238, 691
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	1 cut(s)	93
BisI	GCNGC	3 cut(s)	106, 174, 381
BlsI	GCNGC	3 cut(s)	107, 175, 382
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	220, 311
BmiI	GGNNCC	3 cut(s)	88, 312, 399
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	547
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	264, 614
Bse1I	ACTGG	1 cut(s)	88
Bse21I	CCTNAGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	264, 614
BseJI	GATNNNNATC	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	379
BseSI	GKGCMC	2 cut(s)	142, 633
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	185, 392
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	105, 222, 546
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	142, 373
BslFI	GGGAC	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	3 cut(s)	304, 674, 724
BsnI	GGCC	3 cut(s)	105, 222, 546
Bsp1286I	GDGCHC	4 cut(s)	142, 373, 594, 633
Bsp143I	GATC	5 cut(s)	64, 86, 186, 253, 388
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	3 cut(s)	96, 106, 128
BspANI	GGCC	3 cut(s)	105, 222, 546
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	88, 312, 399
BspPI	GGATC	5 cut(s)	81, 94, 181, 248, 383
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	264, 614
BssMI	GATC	5 cut(s)	64, 86, 186, 253, 388
BssT1I	CCWWGG	2 cut(s)	264, 614
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	25, 579
BstDEI	CTNAG	2 cut(s)	177, 393
BstDSI	CCRYGG	1 cut(s)	614
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	5 cut(s)	67, 89, 189, 256, 391
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	5 cut(s)	64, 86, 186, 253, 388
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 299, 377
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	3 cut(s)	75, 146, 581
BstSCI	CCNGG	1 cut(s)	116
BstSLI	GKGCMC	2 cut(s)	142, 633
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	185, 392
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	86
BstZI	CGGCCG	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	105, 222, 546
BtgI	CCRYGG	1 cut(s)	614
BtgZI	GCGATG	1 cut(s)	710
BtsI	GCAGTG	2 cut(s)	18, 162
BtsIMutI	CAGTG	4 cut(s)	18, 81, 162, 384
Cac8I	GCNNGC	2 cut(s)	25, 579
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	2 cut(s)	220, 311
Csp6I	GTAC	2 cut(s)	406, 715
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	4 cut(s)	72, 143, 578, 615
CviJI	RGCY	9 cut(s)	27, 105, 176, 184, 222, 383, 491, 546, 592
CviKI_1	RGCY	9 cut(s)	27, 105, 176, 184, 222, 383, 491, 546, 592
CviQI	GTAC	2 cut(s)	406, 715
DdeI	CTNAG	2 cut(s)	177, 393
DpnI	GATC	5 cut(s)	66, 88, 188, 255, 390
DpnII	GATC	5 cut(s)	64, 86, 186, 253, 388
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	264, 614
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	309, 504
Eco81I	CCTNAGG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	264, 614
EcoT22I	ATGCAT	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	2 cut(s)	264, 614
FaeI	CATG	4 cut(s)	75, 146, 581, 618
FaiI	YATR	9 cut(s)	73, 144, 495, 520, 579, 596, 616, 638, 662
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	4 cut(s)	71, 142, 577, 614
Fnu4HI	GCNGC	3 cut(s)	106, 174, 381
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	3 cut(s)	106, 174, 381
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	3 cut(s)	106, 174, 381
GsaI	CCCAGC	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	105, 222, 546
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	75, 146, 581, 618
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	15, 131, 269
HphI	GGTGA	2 cut(s)	253, 722
Hpy166II	GTNNAC	2 cut(s)	61, 140
Hpy188I	TCNGA	6 cut(s)	289, 427, 484, 556, 730, 738
Hpy188III	TCNNGA	5 cut(s)	10, 190, 213, 401, 458
Hpy8I	GTNNAC	2 cut(s)	61, 140
HpyAV	CCTTC	5 cut(s)	233, 489, 557, 561, 695
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	9 cut(s)	75, 140, 302, 319, 380, 465, 577, 581, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 299, 377
HpyF3I	CTNAG	2 cut(s)	177, 393
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	75, 146, 581, 618
HspAI	GCGC	1 cut(s)	444
Kzo9I	GATC	5 cut(s)	64, 86, 186, 253, 388
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	2 cut(s)	185, 392
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	79, 602
MalI	GATC	5 cut(s)	66, 88, 188, 255, 390
MboI	GATC	5 cut(s)	64, 86, 186, 253, 388
MboII	GAAGA	3 cut(s)	497, 580, 655
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	4 cut(s)	142, 373, 594, 633
MluCI	AATT	2 cut(s)	413, 731
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	7 cut(s)	63, 232, 237, 324, 350, 357, 402
Mph1103I	ATGCAT	1 cut(s)	77
MseI	TTAA	1 cut(s)	754
MslI	CAYNNNNRTG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	3 cut(s)	304, 674, 724
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	102, 299, 377
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	5 cut(s)	64, 86, 186, 253, 388
NlaIII	CATG	4 cut(s)	75, 146, 581, 618
NlaIV	GGNNCC	3 cut(s)	88, 312, 399
NmuCI	GTSAC	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	77
NspI	RCATGY	3 cut(s)	75, 146, 581
PaeI	GCATGC	1 cut(s)	581
PciI	ACATGT	1 cut(s)	142
PctI	GAATGC	3 cut(s)	304, 674, 724
PfeI	GAWTC	2 cut(s)	15, 269
PkrI	GCNGC	3 cut(s)	107, 175, 382
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	311
PscI	ACATGT	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	88, 312, 399
PspPI	GGNCC	2 cut(s)	220, 311
PspPPI	RGGWCCY	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	407, 716
RsaNI	GTAC	2 cut(s)	406, 715
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	754
SatI	GCNGC	3 cut(s)	106, 174, 381
Sau3AI	GATC	5 cut(s)	64, 86, 186, 253, 388
Sau96I	GGNCC	2 cut(s)	220, 311
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	4 cut(s)	142, 373, 594, 633
SfaNI	GCATC	1 cut(s)	547
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	2 cut(s)	413, 731
SsiI	CCGC	3 cut(s)	96, 106, 128
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	2 cut(s)	264, 614
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	237, 362
TasI	AATT	2 cut(s)	413, 731
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	15, 269
Tru1I	TTAA	1 cut(s)	754
Tru9I	TTAA	1 cut(s)	754
TscAI	CASTG	4 cut(s)	25, 88, 162, 391
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	173, 380
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	219, 439
TspRI	CASTG	4 cut(s)	25, 88, 162, 391
VneI	GTGCAC	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	731
XceI	RCATGY	3 cut(s)	75, 146, 581
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.