Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

18228221 .. 18232170

Gene Structure 3950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G242400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAACGACGTCGTCTCATCCGAAAGAGGAAGTGAAGAAGAAGAAGAAGAAGGAGGGATTGGGATGGATAGAGTGGGCAAGGGGTTGGTTGTATCTGGTGTACGAGATGCTGTTCCAGAGAATCACGGCCAGCCACTTGCAAAACCCCATGCCTTTGCCTCCTGTCAACGATCTCACTTGCATTGTCACTGGATCCACCAGCGGTATCGGCCGCGAAATTGCCAGGCAGTTGGCGGAAGCTGGGGCGCATGTTGTGATGGCAGTGAGGAACACGAAGGCAGCTAATGAGTTGATCCAGAAGTGGCAGAATGAATGGACTGGAATGGGCCTTCCTCCCAATATTGAGGTAATGGAACTTGATTTGCTCTCCTTGGATTCTGTTGTGAGATTTGCTGAAGCGTGGAATGCACGCTTAGGACCTCTCCATGTTCTTATCAACAATGCTGGGATATTTTCAATTGGAGAGCCACAAAAACTTTCAAAAGATGGGTACGAAGAACACTTGCAAGTCAATCATCTTGCTCCAGCACTGCTCTCAGTTTTGCTATTGCCATCCCTTATCAGAGGCTCTCCAAGTCGAATTATTAATTTGAATTCCGTTATGCATTATGTTGGCTTTGTTGACACAGAAGACATGAACGTCGTTTCTGGGAAAAGAAAATATACAAGCTTAGTGGGTTACTCAAGCAGCAAGCTGGCACAGATTATGTTTAGTAGTGTTCTACATAAGCGGCTCCCTGCCGAATCTGGCATTACTGTAGCATGTGTTTCACCTGGAATTGTGCAGACTAATGTTGCAAGGGATCTTCCCAAAATTGTTCAAGCTGCTTATCATCTAATACCCTATTTTATCTTTAGTGCTCAAGAAGGTTCCAGGAGTGCTCTCTTTGCAGCCACTGATCCTCAGGTTCCTGAGTACTGTGAATTGTTGAAAGCGGATGACTGGCCGGTTTGTGCATTCATTTCTCAAGATTGCCGTCCAACGAATCCTTCTGAAGAAGCTCATAATGTTGAAACTTCTCACGAAGTGTGGGAGAAGACATTTGAGATGATTGGCCTTCCTTCGGATGCAGTGGAGAGGCTTATAGAAGGGGAAGAAGTTGCGTGCAGATATGGTGGTCATAAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

378

Amino Acids

41.73

Weight (kDa)

5.97

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	641
AatII	GACGTC	1 cut(s)	14
AccII	CGCG	1 cut(s)	216
AciI	CCGC	5 cut(s)	204, 214, 236, 733, 938
AclWI	GGATC	5 cut(s)	189, 202, 289, 813, 896
AcoI	YGGCCR	3 cut(s)	129, 211, 947
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	2 cut(s)	417, 1017
AcyI	GRCGYC	1 cut(s)	11
AdeI	CACNNNGTG	1 cut(s)	1030
AfaI	GTAC	3 cut(s)	104, 494, 920
AfiI	CCNNNNNNNGG	1 cut(s)	1066
AgsI	TTSAA	6 cut(s)	459, 483, 595, 824, 934, 1016
AjnI	CCWGG	3 cut(s)	224, 775, 875
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 976, 1008
AluBI	AGCT	6 cut(s)	242, 284, 672, 697, 827, 1004
AluI	AGCT	6 cut(s)	242, 284, 672, 697, 827, 1004
Alw21I	GWGCWC	2 cut(s)	865, 886
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	5 cut(s)	189, 202, 289, 813, 896
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	5 cut(s)	129, 211, 328, 947, 1057
ApeKI	GCWGC	4 cut(s)	281, 690, 827, 893
ApoI	RAATTY	1 cut(s)	595
AseI	ATTAAT	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	328, 419
AsuHPI	GGTGA	1 cut(s)	765
AvaII	GGWCC	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	906
BamHI	GGATCC	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	639, 1046
Bbv12I	GWGCWC	2 cut(s)	865, 886
BbvI	GCAGC	4 cut(s)	293, 702, 814, 905
BccI	CCATC	4 cut(s)	60, 253, 482, 562
BceAI	ACGGC	2 cut(s)	144, 963
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	3 cut(s)	226, 777, 877
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	759
BisI	GCNGC	6 cut(s)	214, 282, 691, 734, 828, 894
BlsI	GCNGC	6 cut(s)	215, 283, 692, 735, 829, 895
BmcAI	AGTACT	1 cut(s)	920
Bme1390I	CCNGG	3 cut(s)	226, 777, 877
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	328, 419
BmiI	GGNNCC	4 cut(s)	196, 737, 874, 912
BmrFI	CCNGG	3 cut(s)	226, 777, 877
BmsI	GCATC	2 cut(s)	99, 1060
BpiI	GAAGAC	2 cut(s)	639, 1046
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	415
BpuEI	CTTGAG	3 cut(s)	670, 849, 954
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	1066
Bse118I	RCCGGY	1 cut(s)	949
Bse1I	ACTGG	3 cut(s)	196, 325, 950
Bse21I	CCTNAGG	1 cut(s)	906
BseBI	CCWGG	3 cut(s)	226, 777, 877
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	5 cut(s)	19, 71, 554, 946, 1075
BseLI	CCNNNNNNNGG	1 cut(s)	1066
BseMII	CTCAG	3 cut(s)	552, 906, 920
BseNI	ACTGG	3 cut(s)	196, 325, 950
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	4 cut(s)	293, 702, 814, 905
BseYI	CCCAGC	2 cut(s)	242, 446
BsgI	GTGCAG	2 cut(s)	806, 1129
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	5 cut(s)	131, 213, 330, 949, 1059
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	2 cut(s)	865, 886
BsiSI	CCGG	1 cut(s)	950
BslI	CCNNNNNNNGG	1 cut(s)	1066
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsmI	GAATGC	2 cut(s)	412, 959
BsnI	GGCC	5 cut(s)	131, 213, 330, 949, 1059
Bsp1286I	GDGCHC	2 cut(s)	865, 886
Bsp143I	GATC	5 cut(s)	172, 194, 294, 805, 901
BspACI	CCGC	5 cut(s)	204, 214, 236, 733, 938
BspANI	GGCC	5 cut(s)	131, 213, 330, 949, 1059
BspCNI	CTCAG	3 cut(s)	551, 907, 919
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	4 cut(s)	196, 737, 874, 912
BspPI	GGATC	5 cut(s)	189, 202, 289, 813, 896
BsrFI	RCCGGY	1 cut(s)	949
BsrI	ACTGG	3 cut(s)	196, 325, 950
BssAI	RCCGGY	1 cut(s)	949
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	5 cut(s)	172, 194, 294, 805, 901
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	226, 777, 877
Bst4CI	ACNGT	2 cut(s)	760, 923
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	5 cut(s)	133, 412, 695, 699, 1108
BstDEI	CTNAG	5 cut(s)	415, 538, 673, 906, 915
BstF5I	GGATG	5 cut(s)	19, 71, 554, 946, 1075
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	5 cut(s)	175, 197, 297, 808, 904
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	5 cut(s)	172, 194, 294, 805, 901
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 407, 890
BstNI	CCWGG	3 cut(s)	226, 777, 877
BstNSI	RCATGY	2 cut(s)	254, 768
BstSCI	CCNGG	3 cut(s)	224, 775, 875
BstSFI	CTRYAG	1 cut(s)	759
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	4 cut(s)	293, 702, 814, 905
BstV2I	GAAGAC	2 cut(s)	639, 1046
BstX2I	RGATCY	2 cut(s)	194, 805
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	2 cut(s)	194, 805
BstZI	CGGCCG	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	906
BsuRI	GGCC	5 cut(s)	131, 213, 330, 949, 1059
BtsCI	GGATG	5 cut(s)	19, 71, 554, 946, 1075
BtsI	GCAGTG	3 cut(s)	270, 530, 1080
BtsIMutI	CAGTG	5 cut(s)	189, 270, 530, 897, 1080
Cac8I	GCNNGC	5 cut(s)	133, 412, 695, 699, 1108
CaiI	CAGNNNCTG	1 cut(s)	899
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	949
Cfr13I	GGNCC	2 cut(s)	328, 419
Csp6I	GTAC	3 cut(s)	103, 493, 919
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	5 cut(s)	151, 251, 428, 637, 765
CviQI	GTAC	3 cut(s)	103, 493, 919
DdeI	CTNAG	5 cut(s)	415, 538, 673, 906, 915
DpnI	GATC	5 cut(s)	174, 196, 296, 807, 903
DpnII	GATC	5 cut(s)	172, 194, 294, 805, 901
DraIII	CACNNNGTG	1 cut(s)	1030
DrdI	GACNNNNNNGTC	1 cut(s)	641
DseDI	GACNNNNNNGTC	1 cut(s)	641
EaeI	YGGCCR	3 cut(s)	129, 211, 947
EagI	CGGCCG	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	251
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	419
Eco52I	CGGCCG	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	417, 1017
Eco81I	CCTNAGG	1 cut(s)	906
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	3 cut(s)	224, 775, 875
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	5 cut(s)	154, 254, 431, 640, 768
FatI	CATG	5 cut(s)	150, 250, 427, 636, 764
Fnu4HI	GCNGC	6 cut(s)	214, 282, 691, 734, 828, 894
FokI	GGATG	5 cut(s)	6, 78, 541, 953, 1082
Fsp4HI	GCNGC	6 cut(s)	214, 282, 691, 734, 828, 894
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	6 cut(s)	214, 282, 691, 734, 828, 894
GsaI	CCCAGC	2 cut(s)	246, 450
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	5 cut(s)	131, 213, 330, 949, 1059
HapII	CCGG	1 cut(s)	950
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	5 cut(s)	154, 254, 431, 640, 768
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	2 cut(s)	169, 625
HindII	GTYRAC	2 cut(s)	169, 625
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	4 cut(s)	123, 377, 746, 988
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	1 cut(s)	765
Hpy166II	GTNNAC	3 cut(s)	103, 169, 625
Hpy188I	TCNGA	4 cut(s)	24, 566, 997, 1069
Hpy188III	TCNNGA	6 cut(s)	118, 298, 866, 914, 971, 1025
Hpy8I	GTNNAC	3 cut(s)	103, 169, 625
Hpy99I	CGWCG	3 cut(s)	13, 16, 647
HpyAV	CCTTC	8 cut(s)	46, 271, 341, 863, 1002, 1070, 1074, 1085
HpyCH4III	ACNGT	2 cut(s)	760, 923
HpyCH4IV	ACGT	2 cut(s)	11, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 407, 890
HpyF3I	CTNAG	5 cut(s)	415, 538, 673, 906, 915
HpySE526I	ACGT	2 cut(s)	11, 642
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	5 cut(s)	154, 254, 431, 640, 768
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	5 cut(s)	172, 194, 294, 805, 901
LmnI	GCTCC	2 cut(s)	529, 741
Lsp1109I	GCAGC	4 cut(s)	293, 702, 814, 905
LweI	GCATC	2 cut(s)	99, 1060
MaeII	ACGT	2 cut(s)	11, 642
MaeIII	GTNAC	2 cut(s)	187, 680
MalI	GATC	5 cut(s)	174, 196, 296, 807, 903
MboI	GATC	5 cut(s)	172, 194, 294, 805, 901
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	2 cut(s)	194, 805
MhlI	GDGCHC	2 cut(s)	865, 886
MluCI	AATT	8 cut(s)	219, 459, 582, 589, 595, 780, 816, 926
MmeI	TCCRAC	1 cut(s)	1007
Mph1103I	ATGCAT	1 cut(s)	609
MseI	TTAA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	3 cut(s)	226, 777, 877
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	2 cut(s)	412, 959
MvaI	CCWGG	3 cut(s)	226, 777, 877
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	210, 407, 890
NdeII	GATC	5 cut(s)	172, 194, 294, 805, 901
NlaIII	CATG	5 cut(s)	154, 254, 431, 640, 768
NlaIV	GGNNCC	4 cut(s)	196, 737, 874, 912
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	609
NspI	RCATGY	2 cut(s)	254, 768
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	2 cut(s)	412, 959
PfeI	GAWTC	4 cut(s)	123, 377, 746, 988
PflFI	GACNNNGTC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	875
PkrI	GCNGC	6 cut(s)	215, 283, 692, 735, 829, 895
PpuMI	RGGWCCY	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	3 cut(s)	224, 775, 875
PspFI	CCCAGC	2 cut(s)	242, 446
PspGI	CCWGG	3 cut(s)	224, 775, 875
PspN4I	GGNNCC	4 cut(s)	196, 737, 874, 912
PspPI	GGNCC	2 cut(s)	328, 419
PspPPI	RGGWCCY	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	2 cut(s)	194, 805
PsyI	GACNNNGTC	1 cut(s)	13
RsaI	GTAC	3 cut(s)	104, 494, 920
RsaNI	GTAC	3 cut(s)	103, 493, 919
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	6 cut(s)	214, 282, 691, 734, 828, 894
Sau3AI	GATC	5 cut(s)	172, 194, 294, 805, 901
Sau96I	GGNCC	2 cut(s)	328, 419
ScaI	AGTACT	1 cut(s)	920
ScrFI	CCNGG	3 cut(s)	226, 777, 877
SduI	GDGCHC	2 cut(s)	865, 886
SfaNI	GCATC	2 cut(s)	99, 1060
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	1 cut(s)	419
SmlI	CTYRAG	3 cut(s)	685, 864, 969
SmoI	CTYRAG	3 cut(s)	685, 864, 969
Sse9I	AATT	8 cut(s)	219, 459, 582, 589, 595, 780, 816, 926
SsiI	CCGC	5 cut(s)	204, 214, 236, 733, 938
SspI	AATATT	1 cut(s)	343
StyD4I	CCNGG	3 cut(s)	224, 775, 875
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	760, 923
TaiI	ACGT	2 cut(s)	14, 645
TaqI	TCGA	1 cut(s)	580
TasI	AATT	8 cut(s)	219, 459, 582, 589, 595, 780, 816, 926
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	2 cut(s)	216, 736
TfiI	GAWTC	4 cut(s)	123, 377, 746, 988
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	5 cut(s)	196, 270, 537, 904, 1080
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	281, 690, 827, 893
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	327, 653, 952
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	5 cut(s)	196, 270, 537, 904, 1080
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	419
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	1 cut(s)	595
XceI	RCATGY	2 cut(s)	254, 768
ZraI	GACGTC	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	920
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.