Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

53058989 .. 53062148

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG413400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCAACGACATCAGCTGATTTGAAAGAGGAAGTGAAGAAGAAGAAGGACGGATTGGGATGGACAGAGTGGTTGAGAGGTTGGTTCTATGTGGTGTACGAGATGCTGTTCCAGAGAATCACCGCCAGCCATTTGCTAAACCCAATTCCTTTGCCTCCTGTCAACGATCTCACATGCATTGTCACTGGATCCACTAGCGGTATTGGCCGCGAAATCGCCAGGCAGTTGGCGGAGTCTGGTGCACATGTTGTAATGGCAGTGAGAAACACCAAAGCAGCTAAGGAGCTGATCCAGAAGTGGCAGAATGAATGGTCGGGAATGGGCCTTCCTCTCAATATCGAGGTGATGGAACTTGATCTACTCTCCTTGAATTCTGTTGTGAGATTTTCTGAAGCGTGGAATGCACGATTGGGACCTTTGCATGTTCTTATCAACAATGCTGGGATATTTTCTATTGGAGAGCCACAAAAATTTTCAAAAGATGGGTATGAAGAGCACTTGCAAGTGAATCATCTGGCTCCAGCACTGCTATCAGTATTGCTACTGCCATCCCTTATTAGAGGCTCTCCAAGTCGAATTGTTAATGTCAATTCCGTTATGCATTATGTTGGGTTCGTTGACACAGACGATATGAACGTTGTTTCTGGGAAAAGAAAATATACAAGCTTAGTGGGTTATACGAGCAGCAAGCTTGCACAGATTATGTTTTGTAGCCTCTTACATAAGCGGCTGCCTGCTGAAGCTGGTATCTGTGTAACATGTGTTTCTCCTGGTGTTGTCCAGACAAATGTAGCGAGGGATCTACCCAGAATCGTTCAAGCTGGTTATCGTTTGATACCCTATTTTATCTTTAGCCCTCAAGAAGGTTCGAGGAGTTCTCTCTTTGCAGCCACTGATCCTCAGGTTCCAGAGTACTGTCAATTGTTGAAATCAGATGACTTTCCTGTTTGCGCTTTCATTTCTCAAGATTGCAATCCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTCACACAAAGTGTGGGAAAATACATTTGAGATGATTGGCCTTCCTTCTGATGCTGTGGAGAAGCTTATAGAAGGGGAAGAAGTTGCATGTAGATACGGGGCTCATAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

375

Amino Acids

41.57

Weight (kDa)

5.74

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	58 - 167	6e-09	KR domain
adh_short	PF00106	59 - 203	8.7e-26	short chain dehydrogenase
adh_short_C2	PF13561	65 - 269	3e-17	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AciI	CCGC	5 cut(s)	123, 198, 208, 230, 727
AclI	AACGTT	1 cut(s)	636
AclWI	GGATC	5 cut(s)	183, 196, 283, 807, 890
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	370, 470
AcuI	CTGAAG	3 cut(s)	411, 759, 1011
AdeI	CACNNNGTG	1 cut(s)	1024
AfaI	GTAC	2 cut(s)	98, 914
AfiI	CCNNNNNNNGG	1 cut(s)	863
AflIII	ACRYGT	2 cut(s)	244, 758
AgsI	TTSAA	5 cut(s)	25, 370, 477, 818, 928
AjnI	CCWGG	2 cut(s)	218, 769
AjuI	GAANNNNNNNTTGG	6 cut(s)	38, 70, 392, 424, 970, 1002
AluBI	AGCT	9 cut(s)	17, 278, 286, 666, 691, 743, 821, 998, 1078
AluI	AGCT	9 cut(s)	17, 278, 286, 666, 691, 743, 821, 998, 1078
Alw21I	GWGCWC	2 cut(s)	244, 498
Alw26I	GTCTC	1 cut(s)	1004
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	5 cut(s)	183, 196, 283, 807, 890
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	3 cut(s)	205, 322, 1051
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	275, 684, 730, 887
ApoI	RAATTY	2 cut(s)	370, 470
AspLEI	GCGC	1 cut(s)	953
AspS9I	GGNCC	2 cut(s)	322, 413
AsuHPI	GGTGA	2 cut(s)	112, 355
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	900
BaeGI	GKGCMC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	1117
Bbv12I	GWGCWC	2 cut(s)	244, 498
BbvI	GCAGC	4 cut(s)	287, 696, 717, 899
BccI	CCATC	4 cut(s)	54, 340, 476, 556
BciT130I	CCWGG	2 cut(s)	220, 771
BcoDI	GTCTC	1 cut(s)	1004
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	6 cut(s)	208, 276, 685, 728, 731, 888
BlsI	GCNGC	6 cut(s)	209, 277, 686, 729, 732, 889
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	2 cut(s)	220, 771
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	322, 413
BmiI	GGNNCC	4 cut(s)	190, 414, 519, 906
BmrFI	CCNGG	2 cut(s)	220, 771
BmsI	GCATC	2 cut(s)	93, 1054
BplI	GAGNNNNNCTC	2 cut(s)	862, 894
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	843, 948
BsaBI	GATNNNNATC	1 cut(s)	972
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse1I	ACTGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	900
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	2 cut(s)	220, 771
BseGI	GGATG	2 cut(s)	65, 548
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMII	CTCAG	1 cut(s)	914
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	886
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	4 cut(s)	287, 696, 717, 899
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	207, 324, 1053
BsiHKAI	GWGCWC	2 cut(s)	244, 498
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	1 cut(s)	1004
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	207, 324, 1053
Bsp1286I	GDGCHC	3 cut(s)	244, 498, 1117
Bsp143I	GATC	6 cut(s)	166, 188, 288, 355, 799, 895
BspACI	CCGC	5 cut(s)	123, 198, 208, 230, 727
BspANI	GGCC	3 cut(s)	207, 324, 1053
BspCNI	CTCAG	1 cut(s)	913
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	190, 414, 519, 906
BspPI	GGATC	5 cut(s)	183, 196, 283, 807, 890
BspQI	GCTCTTC	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	6 cut(s)	166, 188, 288, 355, 799, 895
Bst2UI	CCWGG	2 cut(s)	220, 771
Bst4CI	ACNGT	1 cut(s)	917
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	4 cut(s)	127, 689, 693, 735
BstDEI	CTNAG	3 cut(s)	279, 667, 900
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	2 cut(s)	65, 548
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	953
BstKTI	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
BstMAI	GTCTC	1 cut(s)	1004
BstMBI	GATC	6 cut(s)	166, 188, 288, 355, 799, 895
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 401
BstNI	CCWGG	2 cut(s)	220, 771
BstNSI	RCATGY	5 cut(s)	177, 248, 425, 762, 1104
BstSCI	CCNGG	2 cut(s)	218, 769
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	287, 696, 717, 899
BstX2I	RGATCY	2 cut(s)	188, 799
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	2 cut(s)	188, 799
Bsu36I	CCTNAGG	1 cut(s)	900
BsuRI	GGCC	3 cut(s)	207, 324, 1053
BtsCI	GGATG	2 cut(s)	65, 548
BtsI	GCAGTG	2 cut(s)	264, 524
BtsIMutI	CAGTG	4 cut(s)	183, 264, 524, 891
Cac8I	GCNNGC	4 cut(s)	127, 689, 693, 735
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	1 cut(s)	953
Cfr13I	GGNCC	2 cut(s)	322, 413
Csp6I	GTAC	2 cut(s)	97, 913
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	5 cut(s)	174, 245, 422, 759, 1101
CviQI	GTAC	2 cut(s)	97, 913
DdeI	CTNAG	3 cut(s)	279, 667, 900
DpnI	GATC	6 cut(s)	168, 190, 290, 357, 801, 897
DpnII	GATC	6 cut(s)	166, 188, 288, 355, 799, 895
DraIII	CACNNNGTG	1 cut(s)	1024
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	1117
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	3 cut(s)	411, 759, 1011
Eco81I	CCTNAGG	1 cut(s)	900
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	218, 769
EcoT22I	ATGCAT	2 cut(s)	179, 603
EcoT38I	GRGCYC	1 cut(s)	1117
FaeI	CATG	5 cut(s)	177, 248, 425, 762, 1104
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	5 cut(s)	173, 244, 421, 758, 1100
Fnu4HI	GCNGC	6 cut(s)	208, 276, 685, 728, 731, 888
FokI	GGATG	2 cut(s)	72, 535
FriOI	GRGCYC	1 cut(s)	1117
Fsp4HI	GCNGC	6 cut(s)	208, 276, 685, 728, 731, 888
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	952
GluI	GCNGC	6 cut(s)	208, 276, 685, 728, 731, 888
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	207, 324, 1053
HhaI	GCGC	1 cut(s)	953
Hin1II	CATG	5 cut(s)	177, 248, 425, 762, 1104
Hin6I	GCGC	1 cut(s)	951
HinP1I	GCGC	1 cut(s)	951
HincII	GTYRAC	2 cut(s)	163, 619
HindII	GTYRAC	2 cut(s)	163, 619
HindIII	AAGCTT	3 cut(s)	664, 689, 1076
HinfI	GANTC	4 cut(s)	117, 233, 508, 810
HphI	GGTGA	2 cut(s)	112, 355
Hpy166II	GTNNAC	4 cut(s)	97, 163, 242, 619
Hpy188I	TCNGA	4 cut(s)	391, 934, 991, 1063
Hpy188III	TCNNGA	7 cut(s)	112, 292, 315, 781, 860, 908, 965
Hpy8I	GTNNAC	4 cut(s)	97, 163, 242, 619
HpyAV	CCTTC	7 cut(s)	40, 335, 857, 996, 1064, 1068, 1079
HpyCH4III	ACNGT	1 cut(s)	917
HpyCH4IV	ACGT	1 cut(s)	636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 401
HpyF3I	CTNAG	3 cut(s)	279, 667, 900
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	5 cut(s)	177, 248, 425, 762, 1104
HspAI	GCGC	1 cut(s)	951
Kzo9I	GATC	6 cut(s)	166, 188, 288, 355, 799, 895
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	283, 523
Lsp1109I	GCAGC	4 cut(s)	287, 696, 717, 899
LweI	GCATC	2 cut(s)	93, 1054
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	2 cut(s)	181, 754
MalI	GATC	6 cut(s)	168, 190, 290, 357, 801, 897
MboI	GATC	6 cut(s)	166, 188, 288, 355, 799, 895
MboII	GAAGA	6 cut(s)	49, 52, 55, 503, 1004, 1103
MfeI	CAATTG	1 cut(s)	920
MflI	RGATCY	2 cut(s)	188, 799
MhlI	GDGCHC	3 cut(s)	244, 498, 1117
MluCI	AATT	6 cut(s)	144, 370, 470, 576, 589, 920
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	1001
Mph1103I	ATGCAT	2 cut(s)	179, 603
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	220, 771
MunI	CAATTG	1 cut(s)	920
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	220, 771
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	204, 401
NdeII	GATC	6 cut(s)	166, 188, 288, 355, 799, 895
NlaIII	CATG	5 cut(s)	177, 248, 425, 762, 1104
NlaIV	GGNNCC	4 cut(s)	190, 414, 519, 906
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	2 cut(s)	179, 603
NspI	RCATGY	5 cut(s)	177, 248, 425, 762, 1104
PciI	ACATGT	2 cut(s)	244, 758
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	117, 508, 810
PkrI	GCNGC	6 cut(s)	209, 277, 686, 729, 732, 889
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	413
PscI	ACATGT	2 cut(s)	244, 758
Psp1406I	AACGTT	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	218, 769
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	2 cut(s)	218, 769
PspN4I	GGNNCC	4 cut(s)	190, 414, 519, 906
PspPI	GGNCC	2 cut(s)	322, 413
PspPPI	RGGWCCY	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	342, 374
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	188, 799
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	98, 914
RsaNI	GTAC	2 cut(s)	97, 913
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	6 cut(s)	208, 276, 685, 728, 731, 888
Sau3AI	GATC	6 cut(s)	166, 188, 288, 355, 799, 895
Sau96I	GGNCC	2 cut(s)	322, 413
ScaI	AGTACT	1 cut(s)	914
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	220, 771
SduI	GDGCHC	3 cut(s)	244, 498, 1117
SfaNI	GCATC	2 cut(s)	93, 1054
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	2 cut(s)	858, 963
SmoI	CTYRAG	2 cut(s)	858, 963
Sse9I	AATT	6 cut(s)	144, 370, 470, 576, 589, 920
SsiI	CCGC	5 cut(s)	123, 198, 208, 230, 727
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	218, 769
TaaI	ACNGT	1 cut(s)	917
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	3 cut(s)	339, 574, 869
TasI	AATT	6 cut(s)	144, 370, 470, 576, 589, 920
TatI	WGTACW	1 cut(s)	912
TauI	GCSGC	2 cut(s)	210, 730
TfiI	GAWTC	3 cut(s)	117, 508, 810
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	4 cut(s)	190, 264, 531, 898
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	4 cut(s)	275, 684, 730, 887
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	321, 504, 647, 946
TspGWI	ACGGA	2 cut(s)	66, 583
TspRI	CASTG	4 cut(s)	190, 264, 531, 898
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	413
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	2 cut(s)	370, 470
XceI	RCATGY	5 cut(s)	177, 248, 425, 762, 1104
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	914
Zsp2I	ATGCAT	2 cut(s)	179, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.