Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

19210422 .. 19214539

Gene Structure 4118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCAACGACATCAGCTGATTTGAAAGAGGAAGTGAAGAAGAAGAAGAAGGACGGATTGGGATGGATAGAGTGGTTGAGAGGTTGGTTCTATGTGGTGTACGAGATGCTGTTCCAGAGAATCACTGCCAGCCATTTGCTGAACCCAATGCCTTTGCCTCCTGTCAACGATCTCACATGCATTGTCACTGGATCCACTAGCGGTATCGGCCGTGAAATCGCCAGGCAGTTGGCGGAGTCTGGTGCACATGTTGTAATGGCAGTGAGAAACACCAAAGCAGCTAAGGAGCTGATCCAGAAGTGGCAGAATGAATGGTCAGGAATGGGCCTTCCTCTCAATGTTGAGGTGATGGAACTTGATCTACTCTCCTTGGATTCTGTTGTGAGATTTTCTGAAGCGTGGAATGCACGATTGGGACCTCTGCATGTTCTTATCAACAATGCTGGGATATTTTCTATTGGAGAGCCACAAAAATTTTCAAAAGATGGGTATGAAGAGCACTTGCAAGTGAATCATCTGGCTCCAGCACTGCTATCAGTATTGCTACTGCCATCCCTTATTAGAGGCTCTCCAAGTCGAATTGTTAATGTCAATTCCGTTATGCATTATGTTGGGTTTGTTGACACAGACGACATGAACGTTGTTTCTGGGAAAAGAAAATATACAAGCTTAGTGGGTTATTCGAGCAGCAAGCTCGCACAGATTATGTTTAGTAGTGTCTTACATAAGCGGCTGCCTGCTGAAGCTGGTATTTGTGTAACATGTGTTTCTCCTGGTGTTGTCCAGACAAATGTAGCGAGGGATCTTCCCAGAATCATTCAAGCTGGTTATCGTTTGATACCCTATTTTATCTTTAGCCCTCAAGAAGGTTCGAGGAGTGCTCTCTTTGCAGCCACTGATCCTCAGGTTCCAGAGTACTGTCAATTGTTGAAATCAGATGACTTTCCTGTTTGCGCTTTCATTTCTCAAGATTGCAATCCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTCACACAAAGTGTGGGAAAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCTGTGGAGAAGCTTATAGAAGGGGAAGAAGTTGCATGCAGATATGGGGCTCATAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

376

Amino Acids

41.69

Weight (kDa)

5.85

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	59 - 168	2.1e-09	KR domain
adh_short	PF00106	60 - 204	5.9e-26	short chain dehydrogenase
adh_short_C2	PF13561	66 - 270	1.1e-17	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	214 - 269	1.3e-06	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	201, 233, 730
AclI	AACGTT	1 cut(s)	639
AclWI	GGATC	5 cut(s)	186, 199, 286, 810, 893
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	3 cut(s)	414, 762, 1014
AdeI	CACNNNGTG	1 cut(s)	1027
AfaI	GTAC	2 cut(s)	101, 917
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflIII	ACRYGT	2 cut(s)	247, 761
AgsI	TTSAA	4 cut(s)	25, 480, 821, 931
AjnI	CCWGG	2 cut(s)	221, 772
AjuI	GAANNNNNNNTTGG	6 cut(s)	41, 73, 395, 427, 973, 1005
AluBI	AGCT	9 cut(s)	17, 281, 289, 669, 694, 746, 824, 1001, 1081
AluI	AGCT	9 cut(s)	17, 281, 289, 669, 694, 746, 824, 1001, 1081
Alw21I	GWGCWC	3 cut(s)	247, 501, 883
Alw26I	GTCTC	1 cut(s)	1007
Alw44I	GTGCAC	1 cut(s)	243
AlwI	GGATC	5 cut(s)	186, 199, 286, 810, 893
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	3 cut(s)	208, 325, 1054
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	4 cut(s)	278, 687, 733, 890
ApoI	RAATTY	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	956
AspS9I	GGNCC	2 cut(s)	325, 416
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	903
BaeGI	GKGCMC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	1120
Bbv12I	GWGCWC	3 cut(s)	247, 501, 883
BbvI	GCAGC	4 cut(s)	290, 699, 720, 902
BccI	CCATC	4 cut(s)	57, 343, 479, 559
BceAI	ACGGC	1 cut(s)	195
BcgI	CGANNNNNNTGC	2 cut(s)	676, 710
BciT130I	CCWGG	2 cut(s)	223, 774
BcoDI	GTCTC	1 cut(s)	1007
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	5 cut(s)	279, 688, 731, 734, 891
BlsI	GCNGC	5 cut(s)	280, 689, 732, 735, 892
BmcAI	AGTACT	1 cut(s)	917
Bme1390I	CCNGG	2 cut(s)	223, 774
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	325, 416
BmiI	GGNNCC	4 cut(s)	193, 417, 522, 909
BmrFI	CCNGG	2 cut(s)	223, 774
BmsI	GCATC	2 cut(s)	96, 1057
BplI	GAGNNNNNCTC	2 cut(s)	865, 897
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	846, 951
BsaBI	GATNNNNATC	1 cut(s)	975
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse1I	ACTGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	903
Bse8I	GATNNNNATC	1 cut(s)	975
BseBI	CCWGG	2 cut(s)	223, 774
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	68, 551
BseJI	GATNNNNATC	1 cut(s)	975
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	917
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	889
BseSI	GKGCMC	1 cut(s)	247
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	4 cut(s)	290, 699, 720, 902
BseYI	CCCAGC	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	210, 327, 1056
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	3 cut(s)	247, 501, 883
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	1 cut(s)	1007
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	210, 327, 1056
Bsp1286I	GDGCHC	4 cut(s)	247, 501, 883, 1120
Bsp143I	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
BspACI	CCGC	3 cut(s)	201, 233, 730
BspANI	GGCC	3 cut(s)	210, 327, 1056
BspCNI	CTCAG	1 cut(s)	916
BspLI	GGNNCC	4 cut(s)	193, 417, 522, 909
BspPI	GGATC	5 cut(s)	186, 199, 286, 810, 893
BspQI	GCTCTTC	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	2 cut(s)	223, 774
Bst4CI	ACNGT	1 cut(s)	920
Bst6I	CTCTTC	1 cut(s)	489
BstC8I	GCNNGC	5 cut(s)	130, 692, 696, 738, 1105
BstDEI	CTNAG	3 cut(s)	282, 670, 903
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstF5I	GGATG	2 cut(s)	68, 551
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	6 cut(s)	172, 194, 294, 361, 805, 901
BstMAI	GTCTC	1 cut(s)	1007
BstMBI	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 404, 887
BstNI	CCWGG	2 cut(s)	223, 774
BstNSI	RCATGY	5 cut(s)	180, 251, 428, 765, 1107
BstSCI	CCNGG	2 cut(s)	221, 772
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	4 cut(s)	290, 699, 720, 902
BstX2I	RGATCY	2 cut(s)	191, 802
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	191, 802
BstZI	CGGCCG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	903
BsuRI	GGCC	3 cut(s)	210, 327, 1056
BtsCI	GGATG	2 cut(s)	68, 551
BtsI	GCAGTG	3 cut(s)	123, 267, 527
BtsIMutI	CAGTG	5 cut(s)	123, 186, 267, 527, 894
Cac8I	GCNNGC	5 cut(s)	130, 692, 696, 738, 1105
CaiI	CAGNNNCTG	1 cut(s)	896
CfoI	GCGC	1 cut(s)	956
Cfr13I	GGNCC	2 cut(s)	325, 416
Csp6I	GTAC	2 cut(s)	100, 916
CspCI	CAANNNNNGTGG	2 cut(s)	654, 689
CviAII	CATG	6 cut(s)	177, 248, 425, 634, 762, 1104
CviQI	GTAC	2 cut(s)	100, 916
DdeI	CTNAG	3 cut(s)	282, 670, 903
DpnI	GATC	6 cut(s)	171, 193, 293, 360, 804, 900
DpnII	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
DraIII	CACNNNGTG	1 cut(s)	1027
EaeI	YGGCCR	1 cut(s)	208
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
EciI	GGCGGA	1 cut(s)	248
EclXI	CGGCCG	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	1120
Eco47I	GGWCC	1 cut(s)	416
Eco52I	CGGCCG	1 cut(s)	208
Eco57I	CTGAAG	3 cut(s)	414, 762, 1014
Eco81I	CCTNAGG	1 cut(s)	903
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	221, 772
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	2 cut(s)	182, 606
EcoT38I	GRGCYC	1 cut(s)	1120
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	6 cut(s)	180, 251, 428, 637, 765, 1107
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	6 cut(s)	176, 247, 424, 633, 761, 1103
Fnu4HI	GCNGC	5 cut(s)	279, 688, 731, 734, 891
FokI	GGATG	2 cut(s)	75, 538
FriOI	GRGCYC	1 cut(s)	1120
Fsp4HI	GCNGC	5 cut(s)	279, 688, 731, 734, 891
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	5 cut(s)	279, 688, 731, 734, 891
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	3 cut(s)	210, 327, 1056
HhaI	GCGC	1 cut(s)	956
Hin1II	CATG	6 cut(s)	180, 251, 428, 637, 765, 1107
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HincII	GTYRAC	2 cut(s)	166, 622
HindII	GTYRAC	2 cut(s)	166, 622
HindIII	AAGCTT	2 cut(s)	667, 1079
HinfI	GANTC	5 cut(s)	120, 236, 374, 511, 813
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	4 cut(s)	100, 166, 245, 622
Hpy188I	TCNGA	4 cut(s)	394, 937, 994, 1066
Hpy188III	TCNNGA	7 cut(s)	115, 295, 318, 784, 863, 911, 968
Hpy8I	GTNNAC	4 cut(s)	100, 166, 245, 622
HpyAV	CCTTC	7 cut(s)	43, 338, 860, 999, 1067, 1071, 1082
HpyCH4III	ACNGT	1 cut(s)	920
HpyCH4IV	ACGT	1 cut(s)	639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 404, 887
HpyF3I	CTNAG	3 cut(s)	282, 670, 903
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	6 cut(s)	180, 251, 428, 637, 765, 1107
HspAI	GCGC	1 cut(s)	954
Kzo9I	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	2 cut(s)	286, 526
Lsp1109I	GCAGC	4 cut(s)	290, 699, 720, 902
LweI	GCATC	2 cut(s)	96, 1057
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	2 cut(s)	184, 757
MalI	GATC	6 cut(s)	171, 193, 293, 360, 804, 900
MboI	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
MboII	GAAGA	8 cut(s)	49, 52, 55, 58, 506, 797, 1007, 1106
MfeI	CAATTG	1 cut(s)	923
MflI	RGATCY	2 cut(s)	191, 802
MhlI	GDGCHC	4 cut(s)	247, 501, 883, 1120
MluCI	AATT	4 cut(s)	473, 579, 592, 923
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	1004
Mph1103I	ATGCAT	2 cut(s)	182, 606
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	223, 774
MunI	CAATTG	1 cut(s)	923
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	2 cut(s)	223, 774
MwoI	GCNNNNNNNGC	3 cut(s)	207, 404, 887
NdeII	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
NlaIII	CATG	6 cut(s)	180, 251, 428, 637, 765, 1107
NlaIV	GGNNCC	4 cut(s)	193, 417, 522, 909
NmuCI	GTSAC	1 cut(s)	184
NsiI	ATGCAT	2 cut(s)	182, 606
NspI	RCATGY	5 cut(s)	180, 251, 428, 765, 1107
PaeI	GCATGC	1 cut(s)	1107
PciI	ACATGT	2 cut(s)	247, 761
PciSI	GCTCTTC	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	4 cut(s)	120, 374, 511, 813
PkrI	GCNGC	5 cut(s)	280, 689, 732, 735, 892
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	416
PscI	ACATGT	2 cut(s)	247, 761
Psp1406I	AACGTT	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	221, 772
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	2 cut(s)	221, 772
PspN4I	GGNNCC	4 cut(s)	193, 417, 522, 909
PspPI	GGNCC	2 cut(s)	325, 416
PspPPI	RGGWCCY	1 cut(s)	416
PsrI	GAACNNNNNNTAC	2 cut(s)	345, 377
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	2 cut(s)	191, 802
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	101, 917
RsaNI	GTAC	2 cut(s)	100, 916
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	5 cut(s)	279, 688, 731, 734, 891
Sau3AI	GATC	6 cut(s)	169, 191, 291, 358, 802, 898
Sau96I	GGNCC	2 cut(s)	325, 416
ScaI	AGTACT	1 cut(s)	917
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	223, 774
SduI	GDGCHC	4 cut(s)	247, 501, 883, 1120
SfaNI	GCATC	2 cut(s)	96, 1057
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	861, 966
SmoI	CTYRAG	2 cut(s)	861, 966
SphI	GCATGC	1 cut(s)	1107
Sse9I	AATT	4 cut(s)	473, 579, 592, 923
SsiI	CCGC	3 cut(s)	201, 233, 730
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	221, 772
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	920
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	3 cut(s)	577, 683, 872
TasI	AATT	4 cut(s)	473, 579, 592, 923
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	4 cut(s)	120, 374, 511, 813
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	5 cut(s)	130, 193, 267, 534, 901
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	4 cut(s)	278, 687, 733, 890
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	324, 507, 650, 949
TspGWI	ACGGA	2 cut(s)	69, 586
TspRI	CASTG	5 cut(s)	130, 193, 267, 534, 901
VneI	GTGCAC	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	5 cut(s)	180, 251, 428, 765, 1107
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	917
Zsp2I	ATGCAT	2 cut(s)	182, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.