Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Forward (+)

21526250 .. 21528323

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAGAAGAATGATGGTTTAGGGTGGATTCAGTGGATGAGAGGATGGTTTAATGTTGTGCAAGAGATTCTTTTGCAGAGAATAATGGCTTCTCACTTACAAATTCCATTTCATCTTCCTCCTTTAAACCACTTAACTTGTATTGTCACTGGCTCAACTAGTGGCATTGGCTCCGAGACCGCTAGGCAACTTGCAGAGGCTGGTGCTCATGTTGTTATGGCGGTTAGGAACATAAAAGCAGCTCATGAGCTGATTCAACAATGGCAGACCAAGTGGTCTGCTAGTGGTGAGGGACTCCCACTTAATATTCAGGCAATGGAACTTGACCTTCTCTCTTTAGATTCCGTCGTCAGATTTAGCAATGCGTGGAATGCACGGCTAGCCCCTTTGCATGTTCTGATTAATAATGCCGGCATGTTTGCTATGGGAGGGGCACAAAAATTCTCAGAAGATGGATATGAACAGCACATGCAAGTGAACCATTTAGCTCCAGCTCTGCTTTCACTACTCCTTTTGCCTTCGCTTATCCGAGCTTCCCGGAGTCGAATCATTAATGTTAATTCTGTTATGCATTATGTTGGTTTTGTTGATCCAAATGATATGAATTTTGTTTCTGGTAAACGAAAGTTTTCAAGCTTGAGCGCATATTCTAGCAGCAAACTCGCTCAGGTTATGTTTAACAATGTTCTTTTAAAAAAACTGCCTTTGGAAACCGGCATTAGCGTCGTTTGTTTATCTCCTGGTGTTGTCCAAACTAACATTACAAGAGATCTTCCAAGATTGGTCCAAGATCTTTACTCAGCCTTGCCTTATTTCATCTTTTCACCACAAGAAGGTTGTAGAAGCTCGCTTTTCTCGGCGACAGATCCTCAGATTCCAAACCATTACCAAAAGCTAAAAACCAATGAGAAATCTGTTTGCACATTATTCATATCTCTAAATTGCAAACTCACGAATTGTTCTGAAGAAGCTCAAAACGTTGAAACAGCTAACAGAGTTTGGGAAAAGACATTAGAGTTGATCGGTCTTCCTTCTGATACAGTGGAAAGGCTTGTGGAGGGAGAAGTGGTCAAGTGTCGTTATCGAACTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

364

Amino Acids

40.63

Weight (kDa)

8.79

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	46 - 159	1.5e-07	KR domain
adh_short	PF00106	47 - 192	3.6e-25	short chain dehydrogenase
adh_short_C2	PF13561	53 - 202	2.3e-14	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	204 - 258	4.5e-06	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
AciI	CCGC	2 cut(s)	180, 221
AclI	AACGTT	1 cut(s)	978
AclWI	GGATC	2 cut(s)	584, 860
AcsI	RAATTY	3 cut(s)	102, 440, 604
AcuI	CTGAAG	1 cut(s)	984
AfiI	CCNNNNNNNGG	1 cut(s)	833
AgsI	TTSAA	3 cut(s)	257, 633, 983
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	739
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	584, 860
AlwNI	CAGNNNCTG	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	239, 654
ApoI	RAATTY	3 cut(s)	102, 440, 604
AseI	ATTAAT	2 cut(s)	402, 552
Asp700I	GAANNNNTTC	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	784
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	299, 816
AsuNHI	GCTAGC	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	784
BaeGI	GKGCMC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	1019
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	251, 666
BccI	CCATC	3 cut(s)	8, 39, 446
BceAI	ACGGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	4 cut(s)	643, 677, 706, 740
BciT130I	CCWGG	1 cut(s)	741
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	170
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	5 cut(s)	159, 183, 282, 380, 651
BglII	AGATCT	2 cut(s)	769, 790
BisI	GCNGC	2 cut(s)	240, 655
BlsI	GCNGC	2 cut(s)	241, 656
Bme1390I	CCNGG	2 cut(s)	538, 741
Bme18I	GGWCC	1 cut(s)	784
BmgT120I	GGNCC	1 cut(s)	784
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	2 cut(s)	538, 741
BmtI	GCTAGC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	1019
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	658
BpuMI	CCSGG	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	1053, 1083
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse118I	RCCGGY	2 cut(s)	410, 713
Bse1I	ACTGG	1 cut(s)	154
Bse3DI	GCAATG	2 cut(s)	321, 367
BseBI	CCWGG	1 cut(s)	741
BseGI	GGATG	2 cut(s)	42, 50
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	2 cut(s)	321, 367
BseMII	CTCAG	4 cut(s)	459, 680, 813, 884
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	251, 666
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	3 cut(s)	411, 538, 714
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	376
Bso31I	GGTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	208, 436
Bsp143I	GATC	5 cut(s)	589, 769, 790, 865, 1020
BspACI	CCGC	2 cut(s)	180, 221
BspCNI	CTCAG	4 cut(s)	458, 679, 812, 883
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	584, 860
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	2 cut(s)	321, 367
BsrFI	RCCGGY	2 cut(s)	410, 713
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	2 cut(s)	410, 713
BssMI	GATC	5 cut(s)	589, 769, 790, 865, 1020
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	1 cut(s)	1042
BstC8I	GCNNGC	3 cut(s)	381, 412, 848
BstDEI	CTNAG	4 cut(s)	445, 666, 799, 870
BstF5I	GGATG	2 cut(s)	42, 50
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	5 cut(s)	592, 772, 793, 868, 1023
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	5 cut(s)	589, 769, 790, 865, 1020
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 380
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	3 cut(s)	395, 418, 472
BstSCI	CCNGG	2 cut(s)	536, 739
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	251, 666
BstV2I	GAAGAC	1 cut(s)	1019
BstX2I	RGATCY	3 cut(s)	769, 790, 865
BstYI	RGATCY	3 cut(s)	769, 790, 865
BtsCI	GGATG	2 cut(s)	42, 50
BtsIMutI	CAGTG	3 cut(s)	38, 147, 1047
Cac8I	GCNNGC	3 cut(s)	381, 412, 848
CaiI	CAGNNNCTG	1 cut(s)	200
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	644
Cfr10I	RCCGGY	2 cut(s)	410, 713
Cfr13I	GGNCC	1 cut(s)	784
CseI	GACGC	1 cut(s)	712
CspCI	CAANNNNNGTGG	2 cut(s)	119, 154
CviAII	CATG	5 cut(s)	209, 245, 392, 415, 469
DdeI	CTNAG	4 cut(s)	445, 666, 799, 870
DpnI	GATC	5 cut(s)	591, 771, 792, 867, 1022
DpnII	GATC	5 cut(s)	589, 769, 790, 865, 1020
DraI	TTTAAA	2 cut(s)	126, 693
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	984
EcoRII	CCWGG	1 cut(s)	739
EcoT22I	ATGCAT	1 cut(s)	573
FaeI	CATG	5 cut(s)	212, 248, 395, 418, 472
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	5 cut(s)	208, 244, 391, 414, 468
Fnu4HI	GCNGC	2 cut(s)	240, 655
FokI	GGATG	2 cut(s)	49, 57
Fsp4HI	GCNGC	2 cut(s)	240, 655
FspBI	CTAG	5 cut(s)	159, 183, 282, 380, 651
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	2 cut(s)	240, 655
GsuI	CTGGAG	1 cut(s)	474
HapII	CCGG	3 cut(s)	411, 538, 714
HgaI	GACGC	1 cut(s)	712
HhaI	GCGC	1 cut(s)	644
Hin1II	CATG	5 cut(s)	212, 248, 395, 418, 472
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HindIII	AAGCTT	1 cut(s)	634
HinfI	GANTC	8 cut(s)	28, 67, 253, 294, 341, 541, 546, 874
HpaII	CCGG	3 cut(s)	411, 538, 714
HphI	GGTGA	2 cut(s)	299, 816
Hpy166II	GTNNAC	2 cut(s)	478, 620
Hpy188I	TCNGA	8 cut(s)	175, 353, 399, 448, 530, 873, 964, 1036
Hpy188III	TCNNGA	2 cut(s)	245, 952
Hpy8I	GTNNAC	2 cut(s)	478, 620
Hpy99I	CGWCG	2 cut(s)	350, 728
HpyAV	CCTTC	4 cut(s)	338, 528, 827, 1041
HpyCH4III	ACNGT	1 cut(s)	1042
HpyCH4IV	ACGT	1 cut(s)	978
HpyCH4V	TGCA	9 cut(s)	61, 76, 194, 374, 391, 472, 571, 921, 945
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 380
HpyF3I	CTNAG	4 cut(s)	445, 666, 799, 870
HpySE526I	ACGT	1 cut(s)	978
Hsp92II	CATG	5 cut(s)	212, 248, 395, 418, 472
HspAI	GCGC	1 cut(s)	642
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	5 cut(s)	589, 769, 790, 865, 1020
LmnI	GCTCC	2 cut(s)	176, 493
Lsp1109I	GCAGC	2 cut(s)	251, 666
MaeI	CTAG	5 cut(s)	159, 183, 282, 380, 651
MaeII	ACGT	1 cut(s)	978
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	5 cut(s)	591, 771, 792, 867, 1022
MboI	GATC	5 cut(s)	589, 769, 790, 865, 1020
MboII	GAAGA	7 cut(s)	16, 19, 107, 461, 764, 977, 1019
MflI	RGATCY	3 cut(s)	769, 790, 865
MhlI	GDGCHC	2 cut(s)	208, 436
MluCI	AATT	6 cut(s)	102, 440, 559, 604, 940, 955
MlyI	GAGTC	2 cut(s)	288, 550
MnlI	CCTC	7 cut(s)	35, 129, 190, 283, 422, 879, 1051
Mph1103I	ATGCAT	1 cut(s)	573
MroNI	GCCGGC	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	628
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	3 cut(s)	411, 538, 714
MspR9I	CCNGG	2 cut(s)	538, 741
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	2 cut(s)	371, 380
NaeI	GCCGGC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	5 cut(s)	589, 769, 790, 865, 1020
NgoMIV	GCCGGC	1 cut(s)	410
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	212, 248, 395, 418, 472
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	1 cut(s)	836
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	3 cut(s)	395, 418, 472
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	1 cut(s)	376
PdiI	GCCGGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	6 cut(s)	28, 67, 253, 341, 546, 874
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	241, 656
PleI	GAGTC	2 cut(s)	288, 549
PpsI	GAGTC	2 cut(s)	288, 549
PshBI	ATTAAT	2 cut(s)	402, 552
Psp1406I	AACGTT	1 cut(s)	978
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	784
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	3 cut(s)	769, 790, 865
RseI	CAYNNNNRTG	1 cut(s)	473
SatI	GCNGC	2 cut(s)	240, 655
Sau3AI	GATC	5 cut(s)	589, 769, 790, 865, 1020
Sau96I	GGNCC	1 cut(s)	784
SchI	GAGTC	2 cut(s)	288, 550
ScrFI	CCNGG	2 cut(s)	538, 741
SduI	GDGCHC	2 cut(s)	208, 436
SinI	GGWCC	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	6 cut(s)	102, 440, 559, 604, 940, 955
SsiI	CCGC	2 cut(s)	180, 221
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	5 cut(s)	159, 183, 282, 380, 651
StyD4I	CCNGG	2 cut(s)	536, 739
TaaI	ACNGT	1 cut(s)	1042
TaiI	ACGT	1 cut(s)	981
TaqI	TCGA	2 cut(s)	544, 1084
TaqII	GACCGA	1 cut(s)	1013
TasI	AATT	6 cut(s)	102, 440, 559, 604, 940, 955
TfiI	GAWTC	6 cut(s)	28, 67, 253, 341, 546, 874
TscAI	CASTG	3 cut(s)	38, 154, 1047
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	239, 654
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	6 cut(s)	17, 101, 474, 617, 805, 919
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	3 cut(s)	38, 154, 1047
VpaK11BI	GGWCC	1 cut(s)	784
VspI	ATTAAT	2 cut(s)	402, 552
XapI	RAATTY	3 cut(s)	102, 440, 604
XceI	RCATGY	3 cut(s)	395, 418, 472
XmnI	GAANNNNTTC	1 cut(s)	628
XspI	CTAG	5 cut(s)	159, 183, 282, 380, 651
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.