Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

21626192 .. 21629339

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGATAGCGTGGATGAGAGGGTGGTTGTATGTGGTCTACGAGATGCTGTTCCAGAGAATCACCGCCAGCCACTTGCAAAACCCCATGCCTTTGCCTCCCGTCAACGATCGATCACTTGCATTGTCACTGGATCCACCAGCGGCATCGGCCGCGAAATCGCCAGGCAGTTAGCGGAATCAGGGGCGCATGTTGTAATGGCGGTGAGGAATACGAAGGCGGCTAATGAGCTGATCCAGAAGTGGCAGAATGAATGGTCTGGAATGGGACTTCCTCTCAATATTGAGGTAATGGAACTTGATCTGCTTTCATTGGATTCTGTCGTGAGATTTGCCCAAGCATGGAATGCACGTTTGGGCCCTCTTCATGTTCTTATCAACAATGCTGGGATATTTTCAATTGGAGAGCCGCAAAAGTTTTCAAAAGATGGTTACGAAGAACACTTGCAAGTGAACCATCTGGCTCCAGCACTGCTATCTGTCTTGCTATTGCCTTCCCTCATTAGAGGCTCTCCGAGTCGAATTGTTAACTTGAATTCCGTTATGCATTATGTTGGCTTTGTTGACACAGAAGACATGAACGTTGTTTCCGGGAAAAGAAAATTTACAAGCTTAGTGGGTTACACAAGCAGCAAGCTGGCACAGATTATGTTTAGTAGTGTCCTACATAAGCGTCTGCCTGCTGAATCTGGCATTAGTGTAGTATGCGTTTCACCTGGAATTGTCCAGACTAATGTTGCAAGGGATCTACCCAAGATTGTTCAGGCTGCTTATCATCTAGTACCTTATTTTATGTTTAGTGCTCAAGAAGGTTCTAGGAGTGCTCTGTTTGCAGCCACTGATCCCCAGGTTCCCGAGTACTGTGAATTGTTGAAAACGGATGATTTTCCTGTTTGTGCCTTTATTTCTCAAGATTGCCGTCCAACGAATCCTTCAGAAGAATCGCATAATGTTGAAACTTCTCACGAGGTGTGGGAGAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCAGTGGAGAGGCTATTAGAAGGGGAAGAAGTTGCAAGCAGATACGGGGCTCATGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

357

Amino Acids

39.15

Weight (kDa)

5.67

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	39 - 149	1.6e-09	KR domain
adh_short	PF00106	40 - 184	2.8e-25	short chain dehydrogenase
adh_short_C2	PF13561	46 - 251	3.7e-18	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	194 - 249	8.8e-07	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	153
AciI	CCGC	7 cut(s)	64, 141, 151, 173, 200, 218, 407
AclI	AACGTT	1 cut(s)	579
AclWI	GGATC	5 cut(s)	126, 139, 226, 750, 833
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	532, 599
AcuI	CTGAAG	1 cut(s)	915
AdeI	CACNNNGTG	1 cut(s)	967
AfaI	GTAC	2 cut(s)	780, 857
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	396, 420, 532, 871, 953
AjnI	CCWGG	3 cut(s)	161, 712, 843
AjuI	GAANNNNNNNTTGG	4 cut(s)	335, 367, 913, 945
AloI	GAACNNNNNNTCC	2 cut(s)	569, 601
AluBI	AGCT	3 cut(s)	229, 609, 634
AluI	AGCT	3 cut(s)	229, 609, 634
Alw21I	GWGCWC	2 cut(s)	802, 823
AlwI	GGATC	5 cut(s)	126, 139, 226, 750, 833
AlwNI	CAGNNNCTG	1 cut(s)	836
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	3 cut(s)	148, 355, 994
ApaI	GGGCCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	627, 764, 830
ApoI	RAATTY	2 cut(s)	532, 599
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	355, 356
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	3 cut(s)	53, 214, 702
AvaI	CYCGRG	1 cut(s)	851
BaeGI	GKGCMC	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	2 cut(s)	359, 1060
BauI	CACGAG	1 cut(s)	962
BbsI	GAAGAC	2 cut(s)	576, 983
Bbv12I	GWGCWC	2 cut(s)	802, 823
BbvI	GCAGC	3 cut(s)	639, 751, 842
BccI	CCATC	2 cut(s)	419, 462
BceAI	ACGGC	1 cut(s)	900
BciT130I	CCWGG	3 cut(s)	163, 714, 845
BcnI	CCSGG	1 cut(s)	589
BfaI	CTAG	2 cut(s)	776, 813
BisI	GCNGC	7 cut(s)	142, 151, 219, 407, 628, 765, 831
BlsI	GCNGC	7 cut(s)	143, 152, 220, 408, 629, 766, 832
BmcAI	AGTACT	1 cut(s)	857
Bme1390I	CCNGG	4 cut(s)	163, 589, 714, 845
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	2 cut(s)	355, 356
BmiI	GGNNCC	4 cut(s)	133, 357, 462, 849
BmrFI	CCNGG	4 cut(s)	163, 589, 714, 845
BmsI	GCATC	3 cut(s)	34, 153, 997
BpiI	GAAGAC	2 cut(s)	576, 983
BpmI	CTGGAG	1 cut(s)	447
BpuEI	CTTGAG	2 cut(s)	786, 891
BpuMI	CCSGG	1 cut(s)	589
Bsa29I	ATCGAT	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	843
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	3 cut(s)	163, 714, 845
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	843
BseGI	GGATG	2 cut(s)	19, 883
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	359
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	639, 751, 842
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	2 cut(s)	110, 151
BshFI	GGCC	3 cut(s)	150, 357, 996
BshVI	ATCGAT	1 cut(s)	110
BsiEI	CGRYCG	2 cut(s)	110, 151
BsiHKAI	GWGCWC	2 cut(s)	802, 823
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	3 cut(s)	150, 357, 996
BsoBI	CYCGRG	1 cut(s)	851
Bsp120I	GGGCCC	1 cut(s)	355
Bsp1286I	GDGCHC	4 cut(s)	359, 802, 823, 1060
Bsp143I	GATC	7 cut(s)	107, 111, 131, 231, 298, 742, 838
BspACI	CCGC	7 cut(s)	64, 141, 151, 173, 200, 218, 407
BspANI	GGCC	3 cut(s)	150, 357, 996
BspDI	ATCGAT	1 cut(s)	110
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	4 cut(s)	133, 357, 462, 849
BspPI	GGATC	5 cut(s)	126, 139, 226, 750, 833
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	843
BssMI	GATC	7 cut(s)	107, 111, 131, 231, 298, 742, 838
BssSI	CACGAG	1 cut(s)	962
Bst2BI	CACGAG	1 cut(s)	962
Bst2UI	CCWGG	3 cut(s)	163, 714, 845
Bst4CI	ACNGT	1 cut(s)	860
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	5 cut(s)	68, 632, 636, 678, 1045
BstDEI	CTNAG	1 cut(s)	610
BstF5I	GGATG	2 cut(s)	19, 883
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	7 cut(s)	110, 114, 134, 234, 301, 745, 841
BstMBI	GATC	7 cut(s)	107, 111, 131, 231, 298, 742, 838
BstMCI	CGRYCG	2 cut(s)	110, 151
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 150, 344, 827
BstNI	CCWGG	3 cut(s)	163, 714, 845
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	4 cut(s)	161, 587, 712, 843
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	639, 751, 842
BstV2I	GAAGAC	2 cut(s)	576, 983
BstX2I	RGATCY	2 cut(s)	131, 742
BstYI	RGATCY	2 cut(s)	131, 742
BstZI	CGGCCG	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	150, 357, 996
BsuTUI	ATCGAT	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	19, 883
BtsI	GCAGTG	2 cut(s)	467, 1017
BtsIMutI	CAGTG	4 cut(s)	126, 467, 834, 1017
Cac8I	GCNNGC	5 cut(s)	68, 632, 636, 678, 1045
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	355, 356
ClaI	ATCGAT	1 cut(s)	110
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	2 cut(s)	779, 856
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	6 cut(s)	86, 188, 339, 365, 574, 1061
CviQI	GTAC	2 cut(s)	779, 856
DdeI	CTNAG	1 cut(s)	610
DpnI	GATC	7 cut(s)	109, 113, 133, 233, 300, 744, 840
DpnII	GATC	7 cut(s)	107, 111, 131, 231, 298, 742, 838
DraIII	CACNNNGTG	1 cut(s)	967
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EclXI	CGGCCG	1 cut(s)	148
Eco24I	GRGCYC	2 cut(s)	359, 1060
Eco52I	CGGCCG	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	161, 712, 843
EcoT22I	ATGCAT	1 cut(s)	546
EcoT38I	GRGCYC	2 cut(s)	359, 1060
FaeI	CATG	6 cut(s)	89, 191, 342, 368, 577, 1064
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	6 cut(s)	85, 187, 338, 364, 573, 1060
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	7 cut(s)	142, 151, 219, 407, 628, 765, 831
FokI	GGATG	2 cut(s)	26, 890
FriOI	GRGCYC	2 cut(s)	359, 1060
Fsp4HI	GCNGC	7 cut(s)	142, 151, 219, 407, 628, 765, 831
FspBI	CTAG	2 cut(s)	776, 813
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	7 cut(s)	142, 151, 219, 407, 628, 765, 831
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	150, 357, 996
HapII	CCGG	1 cut(s)	588
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	6 cut(s)	89, 191, 342, 368, 577, 1064
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	3 cut(s)	104, 526, 562
HindII	GTYRAC	3 cut(s)	104, 526, 562
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	7 cut(s)	58, 176, 314, 514, 683, 925, 938
HpaI	GTTAAC	1 cut(s)	526
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	3 cut(s)	53, 214, 702
Hpy166II	GTNNAC	5 cut(s)	38, 104, 451, 526, 562
Hpy188I	TCNGA	3 cut(s)	513, 934, 1006
Hpy188III	TCNNGA	9 cut(s)	53, 235, 258, 322, 724, 803, 851, 908, 962
Hpy8I	GTNNAC	5 cut(s)	38, 104, 451, 526, 562
HpyAV	CCTTC	7 cut(s)	208, 501, 800, 939, 1007, 1011, 1022
HpyCH4III	ACNGT	1 cut(s)	860
HpyCH4IV	ACGT	2 cut(s)	349, 579
HpyCH4V	TGCA	9 cut(s)	77, 120, 347, 445, 544, 737, 830, 1010, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 150, 344, 827
HpyF3I	CTNAG	1 cut(s)	610
HpySE526I	ACGT	2 cut(s)	349, 579
Hsp92II	CATG	6 cut(s)	89, 191, 342, 368, 577, 1064
HspAI	GCGC	1 cut(s)	185
KspAI	GTTAAC	1 cut(s)	526
Kzo9I	GATC	7 cut(s)	107, 111, 131, 231, 298, 742, 838
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	3 cut(s)	639, 751, 842
LweI	GCATC	3 cut(s)	34, 153, 997
MaeI	CTAG	2 cut(s)	776, 813
MaeII	ACGT	2 cut(s)	349, 579
MaeIII	GTNAC	3 cut(s)	124, 428, 617
MalI	GATC	7 cut(s)	109, 113, 133, 233, 300, 744, 840
MboI	GATC	7 cut(s)	107, 111, 131, 231, 298, 742, 838
MboII	GAAGA	6 cut(s)	353, 446, 581, 947, 988, 1046
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	2 cut(s)	131, 742
MhlI	GDGCHC	4 cut(s)	359, 802, 823, 1060
MluCI	AATT	6 cut(s)	396, 519, 532, 599, 717, 863
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	944
Mph1103I	ATGCAT	1 cut(s)	546
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	4 cut(s)	163, 589, 714, 845
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	3 cut(s)	163, 714, 845
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	4 cut(s)	147, 150, 344, 827
NciI	CCSGG	1 cut(s)	589
NdeII	GATC	7 cut(s)	107, 111, 131, 231, 298, 742, 838
NlaIII	CATG	6 cut(s)	89, 191, 342, 368, 577, 1064
NlaIV	GGNNCC	4 cut(s)	133, 357, 462, 849
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	546
NspI	RCATGY	1 cut(s)	191
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	6 cut(s)	58, 176, 314, 683, 925, 938
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	7 cut(s)	143, 152, 220, 408, 629, 766, 832
Ple19I	CGATCG	1 cut(s)	110
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	579
Psp6I	CCWGG	3 cut(s)	161, 712, 843
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	3 cut(s)	161, 712, 843
PspN4I	GGNNCC	4 cut(s)	133, 357, 462, 849
PspOMI	GGGCCC	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	355, 356
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	2 cut(s)	131, 742
PvuI	CGATCG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	780, 857
RsaNI	GTAC	2 cut(s)	779, 856
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	7 cut(s)	142, 151, 219, 407, 628, 765, 831
Sau3AI	GATC	7 cut(s)	107, 111, 131, 231, 298, 742, 838
Sau96I	GGNCC	2 cut(s)	355, 356
ScaI	AGTACT	1 cut(s)	857
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	4 cut(s)	163, 589, 714, 845
SduI	GDGCHC	4 cut(s)	359, 802, 823, 1060
SfaNI	GCATC	3 cut(s)	34, 153, 997
SmlI	CTYRAG	2 cut(s)	801, 906
SmoI	CTYRAG	2 cut(s)	801, 906
Sse9I	AATT	6 cut(s)	396, 519, 532, 599, 717, 863
SsiI	CCGC	7 cut(s)	64, 141, 151, 173, 200, 218, 407
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	2 cut(s)	776, 813
StyD4I	CCNGG	4 cut(s)	161, 587, 712, 843
TaaI	ACNGT	1 cut(s)	860
TaiI	ACGT	2 cut(s)	352, 582
TaqI	TCGA	2 cut(s)	110, 517
TasI	AATT	6 cut(s)	396, 519, 532, 599, 717, 863
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	4 cut(s)	144, 153, 221, 409
TfiI	GAWTC	6 cut(s)	58, 176, 314, 683, 925, 938
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	4 cut(s)	133, 474, 841, 1017
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	627, 764, 830
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	264, 297, 353, 590
TspGWI	ACGGA	2 cut(s)	526, 890
TspRI	CASTG	4 cut(s)	133, 474, 841, 1017
XapI	RAATTY	2 cut(s)	532, 599
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	776, 813
ZrmI	AGTACT	1 cut(s)	857
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.