Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Forward (+)

21523365 .. 21525713

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGCAGTGAAACGTCGTCGTTGACGAAGAAGATGAAGAAGAAGAAGGAAGGTTTGGGATGGATAGAGTCAATTAAAGGATGGAGTTGTGTGTTCCACGAGTTTCTCTTCCAGAGATTCATGGCTTCTCATCTACAGAATCCACTTCCTCTACCTTCACTGAATCACCTCACCTGCATTGTCACTGGCTCCACTAGTGGCATTGGTCGCGAAACCGCTAGGCAGCTTGCAGAAGCTGGTGCTCGTGTTGTTATGGCGGTGAGGAATACTAAAGCAGCTCATGAGCTGATTCAGCAATGGCAGAAGGAGTGGTCTGGTAAAGGCATCCCTCTTAATCTCGAGGCTATGGAACTTGATCTTCTCTCTCTGGATTCTGTCGTCGGATTTTGCAATCTGTGGAACGCGCGATTATCCCCTTTGCATGTTCTGATTAACAATGCCGGCATATTTTCCATGGGAGAGGAACAGAAGTTCTCAAAGGATGGATATGAGCAACACATGCAAGTGAACCATTTAGCTCCAGCTCTGCTTTCACTACTCCTTTTGCCCTCACTTATCCGAGGCTCCCCAAGCAGGATCATTAATGTGAATTCTGTTATGCACTATGTTGGTTTCGTTGACCCGGATGACATGAATGTTGTTTCTGGGAAACGAAAGTTTACAAGCCTCGTTGGATATTCTGGCAGCAAGCTTGCACAGGTTATGTTTAGCAATGTACTTTTGAAAAGGCTGCCTCTAGAAACTCGCATTAGCGTTGTTTGTTTATCCCCCGGGATTGTCCTAACAAATGTTGCGAGAGATCTGCCGAGATATGTTCAAGTTCAATACGCGTTGATACCTTATTTCATCTTTTCGCCTCAAGAAGGCTCTAGAAGCACACTTTTCTCAGCTACAGACGCTCAGATTCCAGAGCATTGTGAAAAGCTAAAAACCGAAGATAAGCCCGTTTGTACATTCATATCTCAAAATTGCAAGCACACAAAGCCTTCAGAAGAAGCACACAACGTAGAAACAGCAGAAAGAGTATGGGAAAAGACGATAAAGCTGATCGGTCTTCCTCTTGATGCTGTAGAGAGGCTTATAGAAGGAGAAGAGGTCCAATGCCGGTATGGGACTCATCAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

375

Amino Acids

41.94

Weight (kDa)

8.34

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	58 - 168	3e-08	KR domain
adh_short	PF00106	59 - 201	3.2e-25	short chain dehydrogenase
adh_short_C2	PF13561	65 - 214	1.9e-15	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AccII	CGCG	4 cut(s)	210, 404, 406, 830
AciI	CCGC	2 cut(s)	216, 257
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	972
AfaI	GTAC	2 cut(s)	717, 952
AfiI	CCNNNNNNNGG	2 cut(s)	573, 863
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	3 cut(s)	724, 818, 824
AhlI	ACTAGT	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	584
AlwNI	CAGNNNCTG	1 cut(s)	236
Ama87I	CYCGRG	2 cut(s)	338, 770
ApeKI	GCWGC	4 cut(s)	223, 275, 684, 730
ApoI	RAATTY	1 cut(s)	589
AseI	ATTAAT	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	1096
AsuC2I	CCSGG	3 cut(s)	623, 771, 772
AsuHPI	GGTGA	3 cut(s)	158, 163, 271
AvaI	CYCGRG	2 cut(s)	338, 770
AvaII	GGWCC	1 cut(s)	1096
BauI	CACGAG	2 cut(s)	98, 243
BbsI	GAAGAC	1 cut(s)	1046
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	4 cut(s)	235, 287, 696, 717
BccI	CCATC	3 cut(s)	54, 75, 476
BcgI	CGANNNNNNTGC	2 cut(s)	784, 818
BcnI	CCSGG	3 cut(s)	623, 771, 772
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	4 cut(s)	195, 219, 737, 870
BfmI	CTRYAG	3 cut(s)	134, 891, 1068
BfuAI	ACCTGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	4 cut(s)	224, 276, 685, 731
BlsI	GCNGC	4 cut(s)	225, 277, 686, 732
Bme1390I	CCNGG	3 cut(s)	623, 771, 772
Bme18I	GGWCC	1 cut(s)	1096
BmeT110I	CYCGRG	2 cut(s)	338, 770
BmgT120I	GGNCC	1 cut(s)	1096
BmiI	GGNNCC	2 cut(s)	190, 565
BmrFI	CCNGG	3 cut(s)	623, 771, 772
BmsI	GCATC	2 cut(s)	333, 1054
BpiI	GAAGAC	1 cut(s)	1046
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	843
BpuMI	CCSGG	3 cut(s)	623, 771, 772
BsaJI	CCNNGG	4 cut(s)	453, 559, 769, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	1080, 1110
Bsc4I	CCNNNNNNNGG	2 cut(s)	573, 863
Bse118I	RCCGGY	2 cut(s)	440, 1104
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	2 cut(s)	302, 718
BseDI	CCNNGG	4 cut(s)	453, 559, 769, 770
BseGI	GGATG	5 cut(s)	65, 86, 324, 487, 631
BseLI	CCNNNNNNNGG	2 cut(s)	573, 863
BseMI	GCAATG	2 cut(s)	302, 718
BseMII	CTCAG	2 cut(s)	900, 914
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	4 cut(s)	235, 287, 696, 717
Bsh1236I	CGCG	4 cut(s)	210, 404, 406, 830
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	2 cut(s)	338, 770
BsiSI	CCGG	4 cut(s)	441, 623, 771, 1105
BslI	CCNNNNNNNGG	2 cut(s)	573, 863
BsoBI	CYCGRG	2 cut(s)	338, 770
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	950
Bsp143I	GATC	4 cut(s)	355, 576, 799, 1047
Bsp19I	CCATGG	1 cut(s)	453
Bsp68I	TCGCGA	1 cut(s)	210
BspACI	CCGC	2 cut(s)	216, 257
BspCNI	CTCAG	2 cut(s)	899, 913
BspFNI	CGCG	4 cut(s)	210, 404, 406, 830
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	190, 565
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	302, 718
BsrFI	RCCGGY	2 cut(s)	440, 1104
BsrGI	TGTACA	1 cut(s)	950
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	2 cut(s)	440, 1104
BssECI	CCNNGG	4 cut(s)	453, 559, 769, 770
BssMI	GATC	4 cut(s)	355, 576, 799, 1047
BssSI	CACGAG	2 cut(s)	98, 243
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	2 cut(s)	98, 243
Bst6I	CTCTTC	2 cut(s)	113, 1086
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstAUI	TGTACA	1 cut(s)	950
BstC8I	GCNNGC	5 cut(s)	228, 442, 689, 693, 974
BstDEI	CTNAG	2 cut(s)	886, 900
BstDSI	CCRYGG	1 cut(s)	453
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	5 cut(s)	65, 86, 324, 487, 631
BstFNI	CGCG	4 cut(s)	210, 404, 406, 830
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	4 cut(s)	358, 579, 802, 1050
BstMBI	GATC	4 cut(s)	355, 576, 799, 1047
BstMWI	GCNNNNNNNGC	7 cut(s)	207, 292, 499, 570, 873, 896, 982
BstNSI	RCATGY	2 cut(s)	425, 502
BstSCI	CCNGG	3 cut(s)	621, 769, 770
BstSFI	CTRYAG	3 cut(s)	134, 891, 1068
BstUI	CGCG	4 cut(s)	210, 404, 406, 830
BstV1I	GCAGC	4 cut(s)	235, 287, 696, 717
BstV2I	GAAGAC	1 cut(s)	1046
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	5 cut(s)	65, 86, 324, 487, 631
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	3 cut(s)	13, 158, 183
BtuMI	TCGCGA	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	5 cut(s)	228, 442, 689, 693, 974
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	2 cut(s)	440, 1104
Cfr13I	GGNCC	1 cut(s)	1096
Cfr9I	CCCGGG	1 cut(s)	770
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	2 cut(s)	716, 951
CviAII	CATG	6 cut(s)	121, 281, 422, 454, 499, 631
CviQI	GTAC	2 cut(s)	716, 951
DdeI	CTNAG	2 cut(s)	886, 900
DpnI	GATC	4 cut(s)	357, 578, 801, 1049
DpnII	GATC	4 cut(s)	355, 576, 799, 1047
Eam1104I	CTCTTC	2 cut(s)	113, 1086
EarI	CTCTTC	2 cut(s)	113, 1086
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	1096
Eco57I	CTGAAG	1 cut(s)	972
Eco88I	CYCGRG	2 cut(s)	338, 770
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	6 cut(s)	124, 284, 425, 457, 502, 634
FatI	CATG	6 cut(s)	120, 280, 421, 453, 498, 630
Fnu4HI	GCNGC	4 cut(s)	224, 276, 685, 731
FokI	GGATG	5 cut(s)	72, 93, 311, 494, 638
Fsp4HI	GCNGC	4 cut(s)	224, 276, 685, 731
FspBI	CTAG	4 cut(s)	195, 219, 737, 870
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	4 cut(s)	224, 276, 685, 731
GsuI	CTGGAG	1 cut(s)	504
HapII	CCGG	4 cut(s)	441, 623, 771, 1105
HgaI	GACGC	1 cut(s)	905
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	6 cut(s)	124, 284, 425, 457, 502, 634
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	2 cut(s)	24, 619
HindII	GTYRAC	2 cut(s)	24, 619
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	8 cut(s)	68, 117, 139, 163, 289, 371, 904, 1114
HpaII	CCGG	4 cut(s)	441, 623, 771, 1105
HphI	GGTGA	3 cut(s)	158, 163, 271
Hpy166II	GTNNAC	4 cut(s)	24, 508, 619, 660
Hpy188I	TCNGA	5 cut(s)	383, 429, 560, 903, 991
Hpy8I	GTNNAC	4 cut(s)	24, 508, 619, 660
Hpy99I	CGWCG	3 cut(s)	19, 22, 383
HpyAV	CCTTC	7 cut(s)	40, 44, 165, 298, 857, 996, 1079
HpyCH4IV	ACGT	2 cut(s)	14, 1005
HpyCH4V	TGCA	8 cut(s)	177, 230, 390, 421, 502, 601, 695, 972
HpyF10VI	GCNNNNNNNGC	7 cut(s)	207, 292, 499, 570, 873, 896, 982
HpyF3I	CTNAG	2 cut(s)	886, 900
HpySE526I	ACGT	2 cut(s)	14, 1005
Hsp92II	CATG	6 cut(s)	124, 284, 425, 457, 502, 634
HspAI	GCGC	1 cut(s)	404
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	355, 576, 799, 1047
LmnI	GCTCC	3 cut(s)	194, 523, 569
Lsp1109I	GCAGC	4 cut(s)	235, 287, 696, 717
LweI	GCATC	2 cut(s)	333, 1054
MaeI	CTAG	4 cut(s)	195, 219, 737, 870
MaeII	ACGT	2 cut(s)	14, 1005
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	357, 578, 801, 1049
MboI	GATC	4 cut(s)	355, 576, 799, 1047
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	72, 589, 967
MluI	ACGCGT	1 cut(s)	828
MlyI	GAGTC	2 cut(s)	77, 1108
MmeI	TCCRAC	2 cut(s)	361, 652
MroNI	GCCGGC	1 cut(s)	440
MseI	TTAA	4 cut(s)	75, 333, 432, 582
MslI	CAYNNNNRTG	2 cut(s)	503, 584
MspI	CCGG	4 cut(s)	441, 623, 771, 1105
MspR9I	CCNGG	3 cut(s)	623, 771, 772
MvnI	CGCG	4 cut(s)	210, 404, 406, 830
MwoI	GCNNNNNNNGC	7 cut(s)	207, 292, 499, 570, 873, 896, 982
NaeI	GCCGGC	1 cut(s)	442
NciI	CCSGG	3 cut(s)	623, 771, 772
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	4 cut(s)	355, 576, 799, 1047
NgoMIV	GCCGGC	1 cut(s)	440
NlaIII	CATG	6 cut(s)	124, 284, 425, 457, 502, 634
NlaIV	GGNNCC	2 cut(s)	190, 565
NmeAIII	GCCGAG	1 cut(s)	831
NmuCI	GTSAC	1 cut(s)	181
NruI	TCGCGA	1 cut(s)	210
NspI	RCATGY	2 cut(s)	425, 502
PaeR7I	CTCGAG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	442
PfeI	GAWTC	6 cut(s)	117, 139, 163, 289, 371, 904
PkrI	GCNGC	4 cut(s)	225, 277, 686, 732
PleI	GAGTC	2 cut(s)	76, 1108
PpsI	GAGTC	2 cut(s)	76, 1108
PshBI	ATTAAT	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	190, 565
PspPI	GGNCC	1 cut(s)	1096
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	799
RruI	TCGCGA	1 cut(s)	210
RsaI	GTAC	2 cut(s)	717, 952
RsaNI	GTAC	2 cut(s)	716, 951
RseI	CAYNNNNRTG	2 cut(s)	503, 584
SaqAI	TTAA	4 cut(s)	75, 333, 432, 582
SatI	GCNGC	4 cut(s)	224, 276, 685, 731
Sau3AI	GATC	4 cut(s)	355, 576, 799, 1047
Sau96I	GGNCC	1 cut(s)	1096
SchI	GAGTC	2 cut(s)	77, 1108
ScrFI	CCNGG	3 cut(s)	623, 771, 772
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	2 cut(s)	333, 1054
SfcI	CTRYAG	3 cut(s)	134, 891, 1068
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	1096
SlaI	CTCGAG	1 cut(s)	338
SmaI	CCCGGG	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	503, 584
SmlI	CTYRAG	2 cut(s)	338, 858
SmoI	CTYRAG	2 cut(s)	338, 858
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	3 cut(s)	72, 589, 967
SsiI	CCGC	2 cut(s)	216, 257
SspMI	CTAG	4 cut(s)	195, 219, 737, 870
StyD4I	CCNGG	3 cut(s)	621, 769, 770
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	2 cut(s)	17, 1008
TaqI	TCGA	1 cut(s)	339
TaqII	GACCGA	1 cut(s)	1040
TasI	AATT	3 cut(s)	72, 589, 967
TatI	WGTACW	2 cut(s)	715, 950
TfiI	GAWTC	6 cut(s)	117, 139, 163, 289, 371, 904
Tru1I	TTAA	4 cut(s)	75, 333, 432, 582
Tru9I	TTAA	4 cut(s)	75, 333, 432, 582
TscAI	CASTG	3 cut(s)	13, 165, 190
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	4 cut(s)	223, 275, 684, 730
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	5 cut(s)	50, 109, 647, 835, 946
TspMI	CCCGGG	1 cut(s)	770
TspRI	CASTG	3 cut(s)	13, 165, 190
VpaK11BI	GGWCC	1 cut(s)	1096
VspI	ATTAAT	1 cut(s)	582
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	1 cut(s)	589
XbaI	TCTAGA	2 cut(s)	736, 869
XceI	RCATGY	2 cut(s)	425, 502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1106
XhoI	CTCGAG	1 cut(s)	338
XmaI	CCCGGG	1 cut(s)	770
XspI	CTAG	4 cut(s)	195, 219, 737, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.