Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Forward (+)

157562 .. 158492

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggcaacgacatcagctgatttgaaagaggaagtgaagaagaaggacggattgggatggacagagtggttgagaggttggttctatttggtgtacgagatgctgttccagagaatcactgccagccattcgctaaacccaatgcctttgcctcctgtcaacgatctcacatgcattgtcactggatccactagcagaattggccgcgaaatcaccagttggcggagaatgggccttcctctcaatattgaggcgatggaacttgatctactctccttggattctgttgtgagattttctgaagcgtggaatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

5.33

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	205, 223
AclWI	GGATC	2 cut(s)	180, 193
AcoI	YGGCCR	1 cut(s)	202
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwI	GGATC	2 cut(s)	180, 193
AoxI	GGCC	2 cut(s)	202, 232
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	185
BccI	CCATC	2 cut(s)	51, 250
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	187
BmsI	GCATC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	2 cut(s)	187, 216
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	187, 216
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	204, 234
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	204, 234
Bsp143I	GATC	3 cut(s)	163, 185, 265
BspACI	CCGC	2 cut(s)	205, 223
BspANI	GGCC	2 cut(s)	204, 234
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	180, 193
BsrI	ACTGG	2 cut(s)	187, 216
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	163, 185, 265
BssT1I	CCWWGG	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	3 cut(s)	166, 188, 268
BstMBI	GATC	3 cut(s)	163, 185, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 311
BstNSI	RCATGY	1 cut(s)	174
BstUI	CGCG	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	204, 234
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 180
Cac8I	GCNNGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	171, 315
CviJI	RGCY	4 cut(s)	17, 126, 204, 234
CviKI_1	RGCY	4 cut(s)	17, 126, 204, 234
CviQI	GTAC	1 cut(s)	94
DpnI	GATC	3 cut(s)	165, 187, 267
DpnII	GATC	3 cut(s)	163, 185, 265
EaeI	YGGCCR	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	2 cut(s)	176, 316
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	174, 318
FaiI	YATR	2 cut(s)	172, 316
FatI	CATG	2 cut(s)	170, 314
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	204, 234
Hin1II	CATG	2 cut(s)	174, 318
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	114, 281
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	94, 160
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	94, 160
HpyAV	CCTTC	2 cut(s)	37, 245
HpyCH4V	TGCA	2 cut(s)	174, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 311
Hsp92II	CATG	2 cut(s)	174, 318
Kzo9I	GATC	3 cut(s)	163, 185, 265
LpnPI	CCDG	5 cut(s)	122, 136, 168, 168, 229
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	165, 187, 267
MboI	GATC	3 cut(s)	163, 185, 265
MboII	GAAGA	2 cut(s)	49, 52
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	5 cut(s)	22, 68, 162, 244, 249
Mph1103I	ATGCAT	2 cut(s)	176, 316
MspA1I	CMGCKG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	316
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	201, 311
NdeII	GATC	3 cut(s)	163, 185, 265
NlaIII	CATG	2 cut(s)	174, 318
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	2 cut(s)	176, 316
NspI	RCATGY	1 cut(s)	174
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	114, 281
PkrI	GCNGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	232
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	3 cut(s)	163, 185, 265
Sau96I	GGNCC	1 cut(s)	232
SetI	ASST	2 cut(s)	19, 79
SfaNI	GCATC	1 cut(s)	90
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	2 cut(s)	205, 223
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	276
TasI	AATT	1 cut(s)	198
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	114, 281
TscAI	CASTG	2 cut(s)	124, 187
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	124, 187
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	1 cut(s)	192
Zsp2I	ATGCAT	2 cut(s)	176, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.