Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

24059308 .. 24062526

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21400.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAGAAGAAGAAGGAAGGATTGGGATGGATAGAGTGGATGAGAGGGTGGTTGTATCTGGCGTACGAGATGCTGTTCCAGAGAATCACGGCCAGCCACTTGCAAAACCCCATGCCTTTGCCTCCCATCAACGATCTCACTTGCATTGTCACTGGATCCACCAGCGGCATCGGCCGCGAAATCGCCAGGCAGCTAGCGGAATCAGGCGCGCATGTTGTAATGGCGGTGAGGAATACGAAAGCAGCTAATGAGCTGATCCAGAAGTGGCAAAATGAATGGTCTGGAATGGGGCTTCCTCTCAATATTGAGGTTATGGAACTTGATCTGCTTTCTTTGGATTCTGTTGTGAGATTTGCCCAAGCATGGAATGCTCGTTTAGGACCTCTCCATGTTCTTATCAACAATGCTGGGATATTTTCAATTGGAGAGCCACAAAAGTTTTCTAAAGATGGTTACGAAGAACACTTGCAAGTGAATCATCTGGCTCCAGCATTGCTATCCGTCTTGCTATTGCCTTCCCTCATTAGAGGATCTCCAAGTCGAATTGTTAATTTGAATTCCGTTATGCATTATGTTGGCTTTGTTGACACAGAAGACATGAACGTTGTTTCCGGGAAAAGAAAATATACAAGCTTAGTGGGTTACTCAAGCAGCAAGTTGGCACAGATTATGTTTAGTAGTGTCCTACATAAGCGGCTGCCTGCTGAATCTGGCATTAGTGTAGTGTGCGTTTCACCTGGAATTGTCCAGACTAATGTTGCAAGGGATCGATCCAAGATTGTTCAGGCTGCGTATCATCTAGTACCTTATTTTATGTTTAGTGCTCAAGAAGGTTCTAGGAGTGCTCTGTTTGCAGCCACTGATCGACAGGTTCCGGAGTACTGTGAATTGTTGAAAACGGATGATTTTCCTGTTTGTGCCTTTATTTCTCAAGATTGCTGTCCAACGAATCCTTCAGAAGAATCGCATAATGTTGACACTTCTCACGAAGTGTGGGAGAAGACATTTGAGATGATTGGCCTTCCGTCTGATGCAGTGGAGAGGCTTATAGAAGGGGAAGAAGTTACATGCAGATACGGGGCTCATGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

365

Amino Acids

40.48

Weight (kDa)

5.8

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	177, 209
AccIII	TCCGGA	1 cut(s)	874
AciI	CCGC	5 cut(s)	165, 175, 197, 224, 694
AclI	AACGTT	1 cut(s)	603
AclWI	GGATC	6 cut(s)	150, 163, 250, 538, 765, 774
AcoI	YGGCCR	2 cut(s)	90, 172
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	939
AdeI	CACNNNGTG	1 cut(s)	991
AfaI	GTAC	3 cut(s)	65, 804, 881
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	3 cut(s)	420, 556, 895
AjnI	CCWGG	2 cut(s)	185, 736
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 937, 969
AloI	GAACNNNNNNTCC	2 cut(s)	593, 625
AluBI	AGCT	4 cut(s)	193, 245, 253, 633
AluI	AGCT	4 cut(s)	193, 245, 253, 633
Alw21I	GWGCWC	2 cut(s)	826, 847
AlwI	GGATC	6 cut(s)	150, 163, 250, 538, 765, 774
AlwNI	CAGNNNCTG	1 cut(s)	860
Aor13HI	TCCGGA	1 cut(s)	874
AoxI	GGCC	3 cut(s)	90, 172, 1018
ApeKI	GCWGC	6 cut(s)	190, 242, 651, 697, 788, 854
ApoI	RAATTY	1 cut(s)	556
AspLEI	GCGC	2 cut(s)	209, 211
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	2 cut(s)	238, 726
AsuNHI	GCTAGC	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	380
BamHI	GGATCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	1084
BbsI	GAAGAC	2 cut(s)	600, 1007
Bbv12I	GWGCWC	2 cut(s)	826, 847
BbvI	GCAGC	6 cut(s)	202, 254, 663, 684, 775, 866
BccI	CCATC	3 cut(s)	21, 134, 443
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	187, 738
BcnI	CCSGG	1 cut(s)	613
BfaI	CTAG	3 cut(s)	194, 800, 837
BisI	GCNGC	9 cut(s)	166, 175, 191, 243, 652, 695, 698, 789, 855
BlsI	GCNGC	9 cut(s)	167, 176, 192, 244, 653, 696, 699, 790, 856
BmcAI	AGTACT	1 cut(s)	881
Bme1390I	CCNGG	3 cut(s)	187, 613, 738
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	3 cut(s)	157, 486, 873
BmrFI	CCNGG	3 cut(s)	187, 613, 738
BmsI	GCATC	3 cut(s)	60, 177, 1021
BmtI	GCTAGC	1 cut(s)	197
BpiI	GAAGAC	2 cut(s)	600, 1007
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	3 cut(s)	631, 810, 915
BpuMI	CCSGG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	769
BsaWI	WCCGGW	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	491
BseAI	TCCGGA	1 cut(s)	874
BseBI	CCWGG	2 cut(s)	187, 738
BseCI	ATCGAT	1 cut(s)	769
BseGI	GGATG	3 cut(s)	32, 45, 907
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	157
BsePI	GCGCGC	1 cut(s)	207
BseX3I	CGGCCG	1 cut(s)	172
BseXI	GCAGC	6 cut(s)	202, 254, 663, 684, 775, 866
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	177, 209
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	3 cut(s)	92, 174, 1020
BshVI	ATCGAT	1 cut(s)	769
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	826, 847
BsiSI	CCGG	2 cut(s)	612, 875
BsiWI	CGTACG	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	92, 174, 1020
Bsp1286I	GDGCHC	3 cut(s)	826, 847, 1084
Bsp13I	TCCGGA	1 cut(s)	874
Bsp143I	GATC	8 cut(s)	133, 155, 255, 322, 530, 766, 770, 862
BspACI	CCGC	5 cut(s)	165, 175, 197, 224, 694
BspANI	GGCC	3 cut(s)	92, 174, 1020
BspDI	ATCGAT	1 cut(s)	769
BspEI	TCCGGA	1 cut(s)	874
BspFNI	CGCG	2 cut(s)	177, 209
BspLI	GGNNCC	3 cut(s)	157, 486, 873
BspOI	GCTAGC	1 cut(s)	197
BspPI	GGATC	6 cut(s)	150, 163, 250, 538, 765, 774
BsrDI	GCAATG	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	157
BssHII	GCGCGC	1 cut(s)	207
BssMI	GATC	8 cut(s)	133, 155, 255, 322, 530, 766, 770, 862
Bst2UI	CCWGG	2 cut(s)	187, 738
Bst4CI	ACNGT	1 cut(s)	884
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	94, 195, 209, 702
BstDEI	CTNAG	1 cut(s)	634
BstF5I	GGATG	3 cut(s)	32, 45, 907
BstFNI	CGCG	2 cut(s)	177, 209
BstHHI	GCGC	2 cut(s)	209, 211
BstKTI	GATC	8 cut(s)	136, 158, 258, 325, 533, 769, 773, 865
BstMBI	GATC	8 cut(s)	133, 155, 255, 322, 530, 766, 770, 862
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 174, 368, 851
BstNI	CCWGG	2 cut(s)	187, 738
BstNSI	RCATGY	2 cut(s)	215, 1071
BstSCI	CCNGG	3 cut(s)	185, 611, 736
BstUI	CGCG	2 cut(s)	177, 209
BstV1I	GCAGC	6 cut(s)	202, 254, 663, 684, 775, 866
BstV2I	GAAGAC	2 cut(s)	600, 1007
BstX2I	RGATCY	2 cut(s)	155, 530
BstYI	RGATCY	2 cut(s)	155, 530
BstZI	CGGCCG	1 cut(s)	172
Bsu15I	ATCGAT	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	92, 174, 1020
BsuTUI	ATCGAT	1 cut(s)	769
BtsCI	GGATG	3 cut(s)	32, 45, 907
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	3 cut(s)	150, 858, 1041
Cac8I	GCNNGC	4 cut(s)	94, 195, 209, 702
CaiI	CAGNNNCTG	1 cut(s)	860
CfoI	GCGC	2 cut(s)	209, 211
Cfr13I	GGNCC	1 cut(s)	380
ClaI	ATCGAT	1 cut(s)	769
Csp6I	GTAC	3 cut(s)	64, 803, 880
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	7 cut(s)	112, 212, 363, 389, 598, 1068, 1085
CviQI	GTAC	3 cut(s)	64, 803, 880
DdeI	CTNAG	1 cut(s)	634
DpnI	GATC	8 cut(s)	135, 157, 257, 324, 532, 768, 772, 864
DpnII	GATC	8 cut(s)	133, 155, 255, 322, 530, 766, 770, 862
DraIII	CACNNNGTG	1 cut(s)	991
EaeI	YGGCCR	2 cut(s)	90, 172
EagI	CGGCCG	1 cut(s)	172
EclXI	CGGCCG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	1084
Eco47I	GGWCC	1 cut(s)	380
Eco52I	CGGCCG	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	939
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	185, 736
EcoT22I	ATGCAT	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	1084
FaeI	CATG	7 cut(s)	115, 215, 366, 392, 601, 1071, 1088
FatI	CATG	7 cut(s)	111, 211, 362, 388, 597, 1067, 1084
Fnu4HI	GCNGC	9 cut(s)	166, 175, 191, 243, 652, 695, 698, 789, 855
FokI	GGATG	3 cut(s)	39, 52, 914
FriOI	GRGCYC	1 cut(s)	1084
Fsp4HI	GCNGC	9 cut(s)	166, 175, 191, 243, 652, 695, 698, 789, 855
FspBI	CTAG	3 cut(s)	194, 800, 837
GlaI	GCGC	2 cut(s)	208, 210
GluI	GCNGC	9 cut(s)	166, 175, 191, 243, 652, 695, 698, 789, 855
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	92, 174, 1020
HapII	CCGG	2 cut(s)	612, 875
HhaI	GCGC	2 cut(s)	209, 211
Hin1II	CATG	7 cut(s)	115, 215, 366, 392, 601, 1071, 1088
Hin6I	GCGC	2 cut(s)	207, 209
HinP1I	GCGC	2 cut(s)	207, 209
HincII	GTYRAC	2 cut(s)	586, 976
HindII	GTYRAC	2 cut(s)	586, 976
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	7 cut(s)	84, 200, 338, 475, 707, 949, 962
HpaII	CCGG	2 cut(s)	612, 875
HphI	GGTGA	2 cut(s)	238, 726
Hpy166II	GTNNAC	2 cut(s)	586, 976
Hpy188I	TCNGA	2 cut(s)	958, 1030
Hpy188III	TCNNGA	8 cut(s)	79, 259, 282, 748, 827, 875, 932, 986
Hpy8I	GTNNAC	2 cut(s)	586, 976
HpyAV	CCTTC	7 cut(s)	7, 11, 525, 824, 963, 1031, 1046
HpyCH4III	ACNGT	1 cut(s)	884
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	8 cut(s)	103, 144, 469, 568, 761, 854, 1034, 1071
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 174, 368, 851
HpyF3I	CTNAG	1 cut(s)	634
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	7 cut(s)	115, 215, 366, 392, 601, 1071, 1088
HspAI	GCGC	2 cut(s)	207, 209
Kpn2I	TCCGGA	1 cut(s)	874
Kzo9I	GATC	8 cut(s)	133, 155, 255, 322, 530, 766, 770, 862
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	6 cut(s)	202, 254, 663, 684, 775, 866
LweI	GCATC	3 cut(s)	60, 177, 1021
MaeI	CTAG	3 cut(s)	194, 800, 837
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	4 cut(s)	148, 452, 641, 1063
MalI	GATC	8 cut(s)	135, 157, 257, 324, 532, 768, 772, 864
MboI	GATC	8 cut(s)	133, 155, 255, 322, 530, 766, 770, 862
MboII	GAAGA	8 cut(s)	16, 19, 22, 470, 605, 971, 1012, 1070
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	2 cut(s)	155, 530
MhlI	GDGCHC	3 cut(s)	826, 847, 1084
MluCI	AATT	6 cut(s)	420, 543, 550, 556, 741, 887
MmeI	TCCRAC	1 cut(s)	968
MnlI	CCTC	9 cut(s)	38, 132, 222, 301, 306, 393, 521, 530, 1035
Mph1103I	ATGCAT	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	874
MseI	TTAA	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	2 cut(s)	612, 875
MspR9I	CCNGG	3 cut(s)	187, 613, 738
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	2 cut(s)	187, 738
MvnI	CGCG	2 cut(s)	177, 209
MwoI	GCNNNNNNNGC	4 cut(s)	171, 174, 368, 851
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	8 cut(s)	133, 155, 255, 322, 530, 766, 770, 862
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	7 cut(s)	115, 215, 366, 392, 601, 1071, 1088
NlaIV	GGNNCC	3 cut(s)	157, 486, 873
NmuCI	GTSAC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	570
NspI	RCATGY	2 cut(s)	215, 1071
PauI	GCGCGC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	7 cut(s)	84, 200, 338, 475, 707, 949, 962
Pfl23II	CGTACG	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	611
PkrI	GCNGC	9 cut(s)	167, 176, 192, 244, 653, 696, 699, 790, 856
PpuMI	RGGWCCY	1 cut(s)	380
Psp1406I	AACGTT	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	185, 736
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	185, 736
PspLI	CGTACG	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	157, 486, 873
PspPI	GGNCC	1 cut(s)	380
PspPPI	RGGWCCY	1 cut(s)	380
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	2 cut(s)	155, 530
PteI	GCGCGC	1 cut(s)	207
RsaI	GTAC	3 cut(s)	65, 804, 881
RsaNI	GTAC	3 cut(s)	64, 803, 880
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	9 cut(s)	166, 175, 191, 243, 652, 695, 698, 789, 855
Sau3AI	GATC	8 cut(s)	133, 155, 255, 322, 530, 766, 770, 862
Sau96I	GGNCC	1 cut(s)	380
ScaI	AGTACT	1 cut(s)	881
ScrFI	CCNGG	3 cut(s)	187, 613, 738
SduI	GDGCHC	3 cut(s)	826, 847, 1084
SfaNI	GCATC	3 cut(s)	60, 177, 1021
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	646, 825, 930
SmoI	CTYRAG	3 cut(s)	646, 825, 930
Sse9I	AATT	6 cut(s)	420, 543, 550, 556, 741, 887
SsiI	CCGC	5 cut(s)	165, 175, 197, 224, 694
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	3 cut(s)	194, 800, 837
StyD4I	CCNGG	3 cut(s)	185, 611, 736
TaaI	ACNGT	1 cut(s)	884
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	3 cut(s)	541, 769, 865
TasI	AATT	6 cut(s)	420, 543, 550, 556, 741, 887
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	3 cut(s)	168, 177, 697
TfiI	GAWTC	7 cut(s)	84, 200, 338, 475, 707, 949, 962
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	3 cut(s)	157, 865, 1041
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	6 cut(s)	190, 242, 651, 697, 788, 854
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	17, 288, 614
TspGWI	ACGGA	4 cut(s)	490, 550, 914, 1014
TspRI	CASTG	3 cut(s)	157, 865, 1041
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	2 cut(s)	215, 1071
XspI	CTAG	3 cut(s)	194, 800, 837
ZrmI	AGTACT	1 cut(s)	881
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.