Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

50689817 .. 50691999

Gene Structure 2183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAAACGACTTCAGCTGATTTGAAAGAGGAAGTGAAGAAGAAGAAGGACGGATTGGGATGGACAGAGTGGTTGAGAGGTTGGTTCTATGTGGTGTACGAGATGCTGTTCCAGAGAATCACTGCCAGCCATTTGCTAAACCCAATGCCTTTGCCTCCTGTCAACGATCTCACATGCATTGTCACTGGATCCACTAGCGGTATCGGCCGCGAAATCGCCAGGCAGTTGGCGGAGTCTGGTGCACATGTTGTAATGGCAGTGAGAAACACCAAAGCAGCTAAGGAGCTGATCCAGAGGTGGCAGAATGAATGGTCAGGAATGGGCCTTCCTCTCAATATCGAGGTGATGGAACTTGATCTACTCTCCTTGAATTCTGTTGTGAGATTTTCTGAAGCGTGGAATGCACGATTGGGACCTTTGCATGTTCTTATCAACAATGCTGGGATATTTTCTATTGGAGAGCCACAAAAATTTTCAAAAGATGGGTATGAAGAGCACTTGCAAGTGAATCATCTGGCTCCAGCACTGCTATCAGTATTGCTACTGCCATCCCTTATTAAGCTCTCCAAGTCGAATTATGCATTATGTTGGGTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

199

Amino Acids

22.37

Weight (kDa)

6.97

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	58 - 168	1.7e-09	KR domain
adh_short	PF00106	59 - 188	2.1e-21	short chain dehydrogenase
adh_short_C2	PF13561	65 - 183	5.4e-13	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AciI	CCGC	3 cut(s)	198, 208, 230
AclWI	GGATC	3 cut(s)	183, 196, 283
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	370, 470
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	25, 370, 477
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 392, 424
AluBI	AGCT	4 cut(s)	17, 278, 286, 562
AluI	AGCT	4 cut(s)	17, 278, 286, 562
Alw21I	GWGCWC	2 cut(s)	244, 498
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	3 cut(s)	183, 196, 283
AoxI	GGCC	2 cut(s)	205, 322
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	2 cut(s)	370, 470
AspS9I	GGNCC	2 cut(s)	322, 413
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	188
Bbv12I	GWGCWC	2 cut(s)	244, 498
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	4 cut(s)	54, 340, 476, 556
BciT130I	CCWGG	1 cut(s)	220
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	2 cut(s)	208, 276
BlsI	GCNGC	2 cut(s)	209, 277
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	322, 413
BmiI	GGNNCC	3 cut(s)	190, 414, 519
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	65, 548
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	244
BseX3I	CGGCCG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	207, 324
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	244, 498
BslFI	GGGAC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	2 cut(s)	207, 324
Bsp1286I	GDGCHC	2 cut(s)	244, 498
Bsp143I	GATC	4 cut(s)	166, 188, 288, 355
BspACI	CCGC	3 cut(s)	198, 208, 230
BspANI	GGCC	2 cut(s)	207, 324
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	3 cut(s)	190, 414, 519
BspPI	GGATC	3 cut(s)	183, 196, 283
BspQI	GCTCTTC	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	4 cut(s)	166, 188, 288, 355
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	65, 548
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	4 cut(s)	169, 191, 291, 358
BstMBI	GATC	4 cut(s)	166, 188, 288, 355
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 401
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	3 cut(s)	177, 248, 425
BstSCI	CCNGG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	188
BstZI	CGGCCG	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	207, 324
BtsCI	GGATG	2 cut(s)	65, 548
BtsI	GCAGTG	3 cut(s)	120, 264, 524
BtsIMutI	CAGTG	4 cut(s)	120, 183, 264, 524
Cac8I	GCNNGC	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	322, 413
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	174, 245, 422
CviJI	RGCY	9 cut(s)	17, 129, 207, 278, 286, 324, 463, 518, 562
CviKI_1	RGCY	9 cut(s)	17, 129, 207, 278, 286, 324, 463, 518, 562
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	4 cut(s)	168, 190, 290, 357
DpnII	GATC	4 cut(s)	166, 188, 288, 355
EaeI	YGGCCR	1 cut(s)	205
EagI	CGGCCG	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	245
EclXI	CGGCCG	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	413
Eco52I	CGGCCG	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	218
EcoT22I	ATGCAT	2 cut(s)	179, 583
FaeI	CATG	3 cut(s)	177, 248, 425
FaiI	YATR	7 cut(s)	90, 175, 246, 423, 489, 579, 586
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	3 cut(s)	173, 244, 421
Fnu4HI	GCNGC	2 cut(s)	208, 276
FokI	GGATG	2 cut(s)	72, 535
Fsp4HI	GCNGC	2 cut(s)	208, 276
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	208, 276
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	207, 324
Hin1II	CATG	3 cut(s)	177, 248, 425
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	117, 233, 508
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	3 cut(s)	97, 163, 242
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	3 cut(s)	112, 292, 315
Hpy8I	GTNNAC	3 cut(s)	97, 163, 242
HpyAV	CCTTC	2 cut(s)	40, 335
HpyCH4V	TGCA	6 cut(s)	177, 242, 404, 421, 502, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 401
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	177, 248, 425
Kzo9I	GATC	4 cut(s)	166, 188, 288, 355
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	283, 523
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	168, 190, 290, 357
MboI	GATC	4 cut(s)	166, 188, 288, 355
MboII	GAAGA	4 cut(s)	49, 52, 55, 503
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	244, 498
MluCI	AATT	3 cut(s)	370, 470, 574
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	22, 71, 165, 288, 334, 339
Mph1103I	ATGCAT	2 cut(s)	179, 583
MseI	TTAA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	204, 401
NdeII	GATC	4 cut(s)	166, 188, 288, 355
NlaIII	CATG	3 cut(s)	177, 248, 425
NlaIV	GGNNCC	3 cut(s)	190, 414, 519
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	2 cut(s)	179, 583
NspI	RCATGY	3 cut(s)	177, 248, 425
PciI	ACATGT	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	486
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	117, 508
PkrI	GCNGC	2 cut(s)	209, 277
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	413
PscI	ACATGT	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	190, 414, 519
PspPI	GGNCC	2 cut(s)	322, 413
PspPPI	RGGWCCY	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	342, 374
PsuI	RGATCY	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	2 cut(s)	208, 276
Sau3AI	GATC	4 cut(s)	166, 188, 288, 355
Sau96I	GGNCC	2 cut(s)	322, 413
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	2 cut(s)	244, 498
SetI	ASST	8 cut(s)	19, 82, 280, 288, 299, 345, 418, 564
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	1 cut(s)	413
Sse9I	AATT	3 cut(s)	370, 470, 574
SsiI	CCGC	3 cut(s)	198, 208, 230
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	218
TaqI	TCGA	2 cut(s)	339, 572
TasI	AATT	3 cut(s)	370, 470, 574
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	117, 508
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	4 cut(s)	127, 190, 264, 531
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	321, 504
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	4 cut(s)	127, 190, 264, 531
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	370, 470
XceI	RCATGY	3 cut(s)	177, 248, 425
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	2 cut(s)	179, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.