Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

53438242 .. 53442619

Gene Structure 4378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG390500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCATTATGTTGGGTTCGTTGACACAGACGACATGAACGTTGTTTCTGGGAAAAGAAAATATGCAAGCTTAGTGGGTTATTCGAGCAGCAAGCTCGCACAGATTATGTTTAGTAGTGTCTTACATAAGCGGCTGCCTGGTGAAGCTGGTATCTGTGTAACATGTGTTTCTCCTGGTGTTGTCCAAACAAATGTAGTGAGGGATCTACCCAGAATTGTTCAAGCTGGTTATCGTTTGATACCCTATTTTATCTTTAGCCCTCAAAAAGGTTCGAGGAGTTCTCTCTTTGCAGCCACTGATCCTCTGGTTCCAGAGTACTGTCAATTGTTGAAATCAGATGACTCTCCTGTTTGCGCTTTCATTTCTCAAGATTGCAATTCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTCACAAAAAGTGTGGGAAAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCTGTGGAGAAGCTTATAGAAGGGGAAGAAGTTGCATGCAGATATGGGGCTCATAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

176

Amino Acids

19.37

Weight (kDa)

5.38

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	14 - 69	4e-07	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AclI	AACGTT	1 cut(s)	39
AclWI	GGATC	2 cut(s)	210, 293
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	221, 331, 381
AjnI	CCWGG	2 cut(s)	136, 172
AluBI	AGCT	6 cut(s)	69, 94, 146, 224, 401, 481
AluI	AGCT	6 cut(s)	69, 94, 146, 224, 401, 481
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	210, 293
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	3 cut(s)	87, 133, 290
AspLEI	GCGC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	520
BbvI	GCAGC	3 cut(s)	99, 120, 302
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	2 cut(s)	138, 174
BcoDI	GTCTC	1 cut(s)	407
BisI	GCNGC	4 cut(s)	88, 131, 134, 291
BlsI	GCNGC	4 cut(s)	89, 132, 135, 292
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	138, 174
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	138, 174
BmsI	GCATC	1 cut(s)	457
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpuEI	CTTGAG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	138, 174
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	289
BseXI	GCAGC	3 cut(s)	99, 120, 302
BshFI	GGCC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	2 cut(s)	202, 298
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	210, 293
BssMI	GATC	2 cut(s)	202, 298
Bst2UI	CCWGG	2 cut(s)	138, 174
Bst4CI	ACNGT	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	67, 92, 96, 505
BstDEI	CTNAG	1 cut(s)	70
BstENI	CCTNNNNNAGG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	2 cut(s)	205, 301
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	2 cut(s)	202, 298
BstNI	CCWGG	2 cut(s)	138, 174
BstNSI	RCATGY	2 cut(s)	165, 507
BstSCI	CCNGG	2 cut(s)	136, 172
BstV1I	GCAGC	3 cut(s)	99, 120, 302
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	4 cut(s)	67, 92, 96, 505
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	316
CspCI	CAANNNNNGTGG	4 cut(s)	54, 89, 410, 445
CviAII	CATG	3 cut(s)	34, 162, 504
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	2 cut(s)	204, 300
DpnII	GATC	2 cut(s)	202, 298
Eco24I	GRGCYC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	136, 172
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	520
FaeI	CATG	3 cut(s)	37, 165, 507
FatI	CATG	3 cut(s)	33, 161, 503
Fnu4HI	GCNGC	4 cut(s)	88, 131, 134, 291
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	4 cut(s)	88, 131, 134, 291
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	4 cut(s)	88, 131, 134, 291
HaeIII	GGCC	1 cut(s)	456
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	37, 165, 507
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	2 cut(s)	67, 479
HinfI	GANTC	1 cut(s)	341
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	337, 394, 466
Hpy188III	TCNNGA	2 cut(s)	311, 368
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	399, 467, 471, 482
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	4, 65, 290, 375, 503, 507
HpyF3I	CTNAG	1 cut(s)	70
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	37, 165, 507
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	202, 298
Lsp1109I	GCAGC	3 cut(s)	99, 120, 302
LweI	GCATC	1 cut(s)	457
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	204, 300
MboI	GATC	2 cut(s)	202, 298
MboII	GAAGA	2 cut(s)	407, 506
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	3 cut(s)	213, 323, 376
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	4 cut(s)	192, 267, 270, 312
Mph1103I	ATGCAT	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	138, 174
MunI	CAATTG	1 cut(s)	323
MvaI	CCWGG	2 cut(s)	138, 174
NdeII	GATC	2 cut(s)	202, 298
NlaIII	CATG	3 cut(s)	37, 165, 507
NlaIV	GGNNCC	1 cut(s)	309
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	165, 507
PaeI	GCATGC	1 cut(s)	507
PciI	ACATGT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	89, 132, 135, 292
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PscI	ACATGT	1 cut(s)	161
Psp1406I	AACGTT	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	136, 172
PspGI	CCWGG	2 cut(s)	136, 172
PspN4I	GGNNCC	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SatI	GCNGC	4 cut(s)	88, 131, 134, 291
Sau3AI	GATC	2 cut(s)	202, 298
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	138, 174
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	8 cut(s)	42, 71, 96, 148, 226, 271, 403, 483
SfaNI	GCATC	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
SphI	GCATGC	1 cut(s)	507
Sse9I	AATT	3 cut(s)	213, 323, 376
SsiI	CCGC	1 cut(s)	130
StyD4I	CCNGG	2 cut(s)	136, 172
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	83, 272
TasI	AATT	3 cut(s)	213, 323, 376
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	133
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	3 cut(s)	87, 133, 290
TspDTI	ATGAA	2 cut(s)	50, 349
TspRI	CASTG	1 cut(s)	301
XagI	CCTNNNNNAGG	1 cut(s)	264
XceI	RCATGY	2 cut(s)	165, 507
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.