Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

14156784 .. 14158865

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1170300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCCCAACCCCATGCCTTTGCCTCCCATCAACGATCTCACTTGCATTGTCACTGGATCCACCAGCGGCATCGGCCGCGAAATCGCCAGGCAGCTGGCGGAATCAGGCGCGTATGTTGTAATGGCGGTGAGGAATACGAAAGCAGCTAATGAGCTGATCCAGAAGTGGCAAAATGAATGGTCTGGAATGGGGCTTCCTCTCAATATTGAGGTAATGGAACTTGATCTGCTTTCATTGGATTCTGTTGTGAGATTTGCCGAAGCATGGAATGCTCGTTTAGGACCTCTCCATGTTCTTATCAACAATGCTGGGATATTTTCAATTGGAGAGCCGCAAAAGTTTTCTAAAGATGGTTACGAAGAACACTTGCAAGTGAATCATCTGGCTCCAGCGTTGCTATCCGTCTTGCTATTGCCTTCCCTTATTAGAGGATCTCCGAGTCGAATTGTTAATTTGAATTCCGTTATGCATTATGTTGGCTTTGTTGACACAGAAGACATGAACGTTGTTTCCAGGAAAAGAAAATATACAAGCTTAGTGGGTTACTCAAGCAGCAAGTTGGCACATATTATGTTTAGTAGTGTCCTACATAAGCGGCTGCCTGCTGAATCTGACATTAGTGTAGTGTGCGTTTCACCTGGAATTGTCCAGACTAATGTTGCAAAGGATCTACCCAGGATTGTTCAGGCTGCGTATCATCTAGTACCTTATTTGCTGCAACATTCACTACTTTGCTGGCGGCCGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

250

Amino Acids

27.46

Weight (kDa)

7.79

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	14 - 124	1.6e-09	KR domain
adh_short	PF00106	15 - 159	5e-25	short chain dehydrogenase
adh_short_C2	PF13561	21 - 226	1.6e-17	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	173 - 224	1.3e-06	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	78, 110
AciI	CCGC	7 cut(s)	66, 76, 98, 125, 332, 595, 739
AclI	AACGTT	1 cut(s)	504
AclWI	GGATC	5 cut(s)	51, 64, 151, 439, 675
AcoI	YGGCCR	2 cut(s)	73, 740
AcsI	RAATTY	1 cut(s)	457
AfaI	GTAC	1 cut(s)	705
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	321, 457
AjnI	CCWGG	4 cut(s)	86, 512, 637, 674
AloI	GAACNNNNNNTCC	2 cut(s)	494, 526
AluBI	AGCT	4 cut(s)	94, 146, 154, 534
AluI	AGCT	4 cut(s)	94, 146, 154, 534
AlwI	GGATC	5 cut(s)	51, 64, 151, 439, 675
AoxI	GGCC	2 cut(s)	73, 740
ApeKI	GCWGC	6 cut(s)	91, 143, 552, 598, 689, 715
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	139, 627
AvaII	GGWCC	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	6 cut(s)	103, 155, 564, 585, 676, 702
BccI	CCATC	2 cut(s)	35, 344
BceAI	ACGGC	1 cut(s)	727
BciT130I	CCWGG	4 cut(s)	88, 514, 639, 676
BfaI	CTAG	1 cut(s)	701
Bme1390I	CCNGG	4 cut(s)	88, 514, 639, 676
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	58, 387
BmrFI	CCNGG	4 cut(s)	88, 514, 639, 676
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	674
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	58
BseBI	CCWGG	4 cut(s)	88, 514, 639, 676
BseDI	CCNNGG	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	58
BseX3I	CGGCCG	2 cut(s)	73, 740
BseXI	GCAGC	6 cut(s)	103, 155, 564, 585, 676, 702
BseYI	CCCAGC	1 cut(s)	308
Bsh1236I	CGCG	2 cut(s)	78, 110
Bsh1285I	CGRYCG	2 cut(s)	76, 743
BshFI	GGCC	2 cut(s)	75, 742
BsiEI	CGRYCG	2 cut(s)	76, 743
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	75, 742
Bsp143I	GATC	6 cut(s)	34, 56, 156, 223, 431, 667
BspACI	CCGC	7 cut(s)	66, 76, 98, 125, 332, 595, 739
BspANI	GGCC	2 cut(s)	75, 742
BspFNI	CGCG	2 cut(s)	78, 110
BspLI	GGNNCC	2 cut(s)	58, 387
BspPI	GGATC	5 cut(s)	51, 64, 151, 439, 675
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	6 cut(s)	34, 56, 156, 223, 431, 667
Bst2UI	CCWGG	4 cut(s)	88, 514, 639, 676
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	96, 603, 737
BstDEI	CTNAG	1 cut(s)	535
BstFNI	CGCG	2 cut(s)	78, 110
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	6 cut(s)	37, 59, 159, 226, 434, 670
BstMBI	GATC	6 cut(s)	34, 56, 156, 223, 431, 667
BstMCI	CGRYCG	2 cut(s)	76, 743
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 75, 269
BstNI	CCWGG	4 cut(s)	88, 514, 639, 676
BstSCI	CCNGG	4 cut(s)	86, 512, 637, 674
BstUI	CGCG	2 cut(s)	78, 110
BstV1I	GCAGC	6 cut(s)	103, 155, 564, 585, 676, 702
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	3 cut(s)	56, 431, 667
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	3 cut(s)	56, 431, 667
BstZI	CGGCCG	2 cut(s)	73, 740
BsuRI	GGCC	2 cut(s)	75, 742
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	96, 603, 737
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	704
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviAII	CATG	4 cut(s)	13, 264, 290, 499
CviQI	GTAC	1 cut(s)	704
DdeI	CTNAG	1 cut(s)	535
DpnI	GATC	6 cut(s)	36, 58, 158, 225, 433, 669
DpnII	GATC	6 cut(s)	34, 56, 156, 223, 431, 667
EaeI	YGGCCR	2 cut(s)	73, 740
EagI	CGGCCG	2 cut(s)	73, 740
EciI	GGCGGA	1 cut(s)	113
EclXI	CGGCCG	2 cut(s)	73, 740
Eco47I	GGWCC	1 cut(s)	281
Eco52I	CGGCCG	2 cut(s)	73, 740
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	4 cut(s)	86, 512, 637, 674
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	4 cut(s)	16, 267, 293, 502
FatI	CATG	4 cut(s)	12, 263, 289, 498
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	1 cut(s)	109
GsaI	CCCAGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	75, 742
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	16, 267, 293, 502
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	5 cut(s)	101, 239, 376, 439, 608
HphI	GGTGA	2 cut(s)	139, 627
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	2 cut(s)	438, 613
Hpy188III	TCNNGA	3 cut(s)	160, 183, 649
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	748
HpyAV	CCTTC	1 cut(s)	426
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	5 cut(s)	45, 370, 469, 662, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 75, 269
HpyF3I	CTNAG	1 cut(s)	535
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	4 cut(s)	16, 267, 293, 502
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	34, 56, 156, 223, 431, 667
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	6 cut(s)	103, 155, 564, 585, 676, 702
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	3 cut(s)	49, 353, 542
MalI	GATC	6 cut(s)	36, 58, 158, 225, 433, 669
MboI	GATC	6 cut(s)	34, 56, 156, 223, 431, 667
MboII	GAAGA	2 cut(s)	371, 506
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	3 cut(s)	56, 431, 667
MluCI	AATT	5 cut(s)	321, 444, 451, 457, 642
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	6 cut(s)	33, 123, 202, 207, 294, 422
Mph1103I	ATGCAT	1 cut(s)	471
MseI	TTAA	1 cut(s)	450
MspA1I	CMGCKG	2 cut(s)	66, 94
MspR9I	CCNGG	4 cut(s)	88, 514, 639, 676
MunI	CAATTG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	4 cut(s)	88, 514, 639, 676
MvnI	CGCG	2 cut(s)	78, 110
MwoI	GCNNNNNNNGC	3 cut(s)	72, 75, 269
NdeII	GATC	6 cut(s)	34, 56, 156, 223, 431, 667
NlaIII	CATG	4 cut(s)	16, 267, 293, 502
NlaIV	GGNNCC	2 cut(s)	58, 387
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	471
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	101, 239, 376, 608
PfoI	TCCNGGA	1 cut(s)	512
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PpuMI	RGGWCCY	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	4 cut(s)	86, 512, 637, 674
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	4 cut(s)	86, 512, 637, 674
PspN4I	GGNNCC	2 cut(s)	58, 387
PspPI	GGNCC	1 cut(s)	281
PspPPI	RGGWCCY	1 cut(s)	281
PsuI	RGATCY	3 cut(s)	56, 431, 667
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
SaqAI	TTAA	1 cut(s)	450
Sau3AI	GATC	6 cut(s)	34, 56, 156, 223, 431, 667
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	4 cut(s)	88, 514, 639, 676
SetI	ASST	9 cut(s)	96, 148, 156, 213, 286, 507, 536, 640, 709
SfaNI	GCATC	1 cut(s)	78
SinI	GGWCC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	5 cut(s)	321, 444, 451, 457, 642
SsiI	CCGC	7 cut(s)	66, 76, 98, 125, 332, 595, 739
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	4 cut(s)	86, 512, 637, 674
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	442
TasI	AATT	5 cut(s)	321, 444, 451, 457, 642
TauI	GCSGC	5 cut(s)	69, 78, 334, 598, 742
TfiI	GAWTC	4 cut(s)	101, 239, 376, 608
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	6 cut(s)	91, 143, 552, 598, 689, 715
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	189, 222, 515
TspGWI	ACGGA	2 cut(s)	391, 451
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	457
XspI	CTAG	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.