Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Forward (+)

4192920 .. 4195124

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1050600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCCTTTGCCTCCCATCAACGATCTCACTTGCATTGTCACTGGATCCACCAGCGGCATCGGCCGCGAAATCGCCAGGCAGCTGGCGGAATCAGGCGCGCATGTTGTAATGGCGGTGAGGAATACGAAAGCAGCTAATGAGTTGATCCAGAAGTGGCAAAATGAATGGTCTGGAATGGGGCTTCCTCTCAATATTGAGGTAATGGAACTTGATCTGCTTTCATTGGATTCTGTTGTGAGATTTGCCGAAGCATGGAATGCTCGTTTAGGACCTCTCCATGTTCTTATCAACAATGCTGGGATATTTTCAATTGGAGAGCCGCAAAAGTTTTCTAAAGATGGTTACGAAGAACACTTGCAAGTGAATCATCTGGCTCCAGCGTTGCTATCCGTCTTGCTATTGCCTTCCCTTATTAGAGGATCTCCGAGTCGAATTGTTAATTTGAATTCCGTTATGCATTATGTTGGCTTTGTTGACACAGAAGACATGAACGTTGTTTCCAGGAAAAGAAAATATACAAGCTTAGTGGGTTACTCAAGCAGCAAGTTGGCACAGATTATGTTTAGTAGTGTCCTACATAAGCGGCTGCCTGCTGAATCTGGCATTAGTGTAGTGTGCGTTTCACCTGGAATTGTCCAGACTAATGTTGCAAGGGATCTACCCAGGATTGTTCAGGCTGCGTATCATCTAGTACCTTATTTGCTGCAACATTCACTACTTTGCTGGCGGCCGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

246

Amino Acids

26.95

Weight (kDa)

8.46

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	10 - 120	6.2e-10	KR domain
adh_short	PF00106	11 - 155	9.2e-26	short chain dehydrogenase
adh_short_C2	PF13561	17 - 222	1.6e-18	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	169 - 220	1.2e-06	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	66, 98
AciI	CCGC	7 cut(s)	54, 64, 86, 113, 320, 583, 727
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	5 cut(s)	39, 52, 139, 427, 663
AcoI	YGGCCR	2 cut(s)	61, 728
AcsI	RAATTY	1 cut(s)	445
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	309, 445
AjnI	CCWGG	4 cut(s)	74, 500, 625, 662
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	82, 134, 522
AluI	AGCT	3 cut(s)	82, 134, 522
AlwI	GGATC	5 cut(s)	39, 52, 139, 427, 663
AoxI	GGCC	2 cut(s)	61, 728
ApeKI	GCWGC	6 cut(s)	79, 131, 540, 586, 677, 703
ApoI	RAATTY	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	98, 100
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	127, 615
AvaII	GGWCC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	6 cut(s)	91, 143, 552, 573, 664, 690
BccI	CCATC	2 cut(s)	23, 332
BceAI	ACGGC	1 cut(s)	715
BciT130I	CCWGG	4 cut(s)	76, 502, 627, 664
BfaI	CTAG	1 cut(s)	689
Bme1390I	CCNGG	4 cut(s)	76, 502, 627, 664
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	46, 375
BmrFI	CCNGG	4 cut(s)	76, 502, 627, 664
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	4 cut(s)	76, 502, 627, 664
BseDI	CCNNGG	1 cut(s)	662
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	46
BsePI	GCGCGC	1 cut(s)	96
BseX3I	CGGCCG	2 cut(s)	61, 728
BseXI	GCAGC	6 cut(s)	91, 143, 552, 573, 664, 690
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	2 cut(s)	66, 98
Bsh1285I	CGRYCG	2 cut(s)	64, 731
BshFI	GGCC	2 cut(s)	63, 730
BsiEI	CGRYCG	2 cut(s)	64, 731
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	63, 730
Bsp143I	GATC	6 cut(s)	22, 44, 144, 211, 419, 655
BspACI	CCGC	7 cut(s)	54, 64, 86, 113, 320, 583, 727
BspANI	GGCC	2 cut(s)	63, 730
BspFNI	CGCG	2 cut(s)	66, 98
BspLI	GGNNCC	2 cut(s)	46, 375
BspPI	GGATC	5 cut(s)	39, 52, 139, 427, 663
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	662
BssHII	GCGCGC	1 cut(s)	96
BssMI	GATC	6 cut(s)	22, 44, 144, 211, 419, 655
Bst2UI	CCWGG	4 cut(s)	76, 502, 627, 664
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	84, 98, 591, 725
BstDEI	CTNAG	1 cut(s)	523
BstFNI	CGCG	2 cut(s)	66, 98
BstHHI	GCGC	2 cut(s)	98, 100
BstKTI	GATC	6 cut(s)	25, 47, 147, 214, 422, 658
BstMBI	GATC	6 cut(s)	22, 44, 144, 211, 419, 655
BstMCI	CGRYCG	2 cut(s)	64, 731
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 63, 257
BstNI	CCWGG	4 cut(s)	76, 502, 627, 664
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	4 cut(s)	74, 500, 625, 662
BstUI	CGCG	2 cut(s)	66, 98
BstV1I	GCAGC	6 cut(s)	91, 143, 552, 573, 664, 690
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	3 cut(s)	44, 419, 655
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	3 cut(s)	44, 419, 655
BstZI	CGGCCG	2 cut(s)	61, 728
BsuRI	GGCC	2 cut(s)	63, 730
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	4 cut(s)	84, 98, 591, 725
CfoI	GCGC	2 cut(s)	98, 100
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	692
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	4 cut(s)	101, 252, 278, 487
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	1 cut(s)	523
DpnI	GATC	6 cut(s)	24, 46, 146, 213, 421, 657
DpnII	GATC	6 cut(s)	22, 44, 144, 211, 419, 655
EaeI	YGGCCR	2 cut(s)	61, 728
EagI	CGGCCG	2 cut(s)	61, 728
EciI	GGCGGA	1 cut(s)	101
EclXI	CGGCCG	2 cut(s)	61, 728
Eco47I	GGWCC	1 cut(s)	269
Eco52I	CGGCCG	2 cut(s)	61, 728
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	4 cut(s)	74, 500, 625, 662
EcoT22I	ATGCAT	1 cut(s)	459
FaeI	CATG	4 cut(s)	104, 255, 281, 490
FaiI	YATR	9 cut(s)	102, 253, 279, 455, 462, 488, 516, 560, 579
FatI	CATG	4 cut(s)	100, 251, 277, 486
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	2 cut(s)	97, 99
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	63, 730
HhaI	GCGC	2 cut(s)	98, 100
Hin1II	CATG	4 cut(s)	104, 255, 281, 490
Hin6I	GCGC	2 cut(s)	96, 98
HinP1I	GCGC	2 cut(s)	96, 98
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	5 cut(s)	89, 227, 364, 427, 596
HphI	GGTGA	2 cut(s)	127, 615
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	3 cut(s)	148, 171, 637
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	736
HpyAV	CCTTC	1 cut(s)	414
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	5 cut(s)	33, 358, 457, 650, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 63, 257
HpyF3I	CTNAG	1 cut(s)	523
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	4 cut(s)	104, 255, 281, 490
HspAI	GCGC	2 cut(s)	96, 98
Kzo9I	GATC	6 cut(s)	22, 44, 144, 211, 419, 655
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	6 cut(s)	91, 143, 552, 573, 664, 690
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	37, 341, 530
MalI	GATC	6 cut(s)	24, 46, 146, 213, 421, 657
MboI	GATC	6 cut(s)	22, 44, 144, 211, 419, 655
MboII	GAAGA	2 cut(s)	359, 494
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	3 cut(s)	44, 419, 655
MluCI	AATT	5 cut(s)	309, 432, 439, 445, 630
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	6 cut(s)	21, 111, 190, 195, 282, 410
Mph1103I	ATGCAT	1 cut(s)	459
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	2 cut(s)	54, 82
MspR9I	CCNGG	4 cut(s)	76, 502, 627, 664
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	4 cut(s)	76, 502, 627, 664
MvnI	CGCG	2 cut(s)	66, 98
MwoI	GCNNNNNNNGC	3 cut(s)	60, 63, 257
NdeII	GATC	6 cut(s)	22, 44, 144, 211, 419, 655
NlaIII	CATG	4 cut(s)	104, 255, 281, 490
NlaIV	GGNNCC	2 cut(s)	46, 375
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	1 cut(s)	104
PauI	GCGCGC	1 cut(s)	96
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	89, 227, 364, 596
PfoI	TCCNGGA	1 cut(s)	500
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	269
Psp1406I	AACGTT	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	4 cut(s)	74, 500, 625, 662
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	4 cut(s)	74, 500, 625, 662
PspN4I	GGNNCC	2 cut(s)	46, 375
PspPI	GGNCC	1 cut(s)	269
PspPPI	RGGWCCY	1 cut(s)	269
PsuI	RGATCY	3 cut(s)	44, 419, 655
PteI	GCGCGC	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
SaqAI	TTAA	1 cut(s)	438
Sau3AI	GATC	6 cut(s)	22, 44, 144, 211, 419, 655
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	4 cut(s)	76, 502, 627, 664
SetI	ASST	8 cut(s)	84, 136, 201, 274, 495, 524, 628, 697
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	5 cut(s)	309, 432, 439, 445, 630
SsiI	CCGC	7 cut(s)	54, 64, 86, 113, 320, 583, 727
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	689
StyD4I	CCNGG	4 cut(s)	74, 500, 625, 662
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	430
TasI	AATT	5 cut(s)	309, 432, 439, 445, 630
TauI	GCSGC	5 cut(s)	57, 66, 322, 586, 730
TfiI	GAWTC	4 cut(s)	89, 227, 364, 596
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	6 cut(s)	79, 131, 540, 586, 677, 703
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	177, 210, 503
TspGWI	ACGGA	2 cut(s)	379, 439
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.