Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

48080867 .. 48084273

Gene Structure 3407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAACGACATCAGCTGATTTGAAAGAGGAAGTGAAGAAGAAGAAGAAGAAGGACGGATTGGGATGGACAGAGTGGTTGAGAGGTTGGTTCTATGTGGTGTACGAGATGCTGTTCCTGAGAATCACTGCCAGCCATTCGCTAAACCCAATGCCTTTGCCTCCTGTCAACGATCTCACATGCATTTTGGCGGAGTCTGGTGCACATGTTGTAATGGCAGTGAGAAACACCAAGAATGAATGGTCAGGAATGGGCCTTCCTCTCAATATTGAGGCGATGGAACTTGATCTACTCTCCTTGGATTCTGTTGTGAGATTTTCTGAAGCTTCAGAGCCACAAAAATTTTCAAAAGATGGGTATGAAGAGCACTTGCAAGTGAATCATCTGGCTCCAGCACTGCTATCAGTATTGCTACTGCCATCCCTTATTAGAGGCTCTCCAAACGACATGAACGTTGTTTCTGGGAAAAGAAAATATGCAAGCTTAGTGGGTTATTCGAGCAGCAAGCTCGCACAGATTATGTTTAGTAGTGTCTTACATAAGCGGCTGCCTGGTGAAGCTGGTATCTGTGTAACATGTGTTTCTCCTGGTGTTGTCCAAACAAATGTAGTGAGGGATCTACCCAGAATTGTTCAAGCTGGTTATCGTTTGATACCCTATTTTATCTTTAGCCCTCAAAAAGGTTCGAGGAGTTCTCTCTTTGCAGCCACTGATCCTCTGGTTCCAGAGTACTGTCAATTGTTGAAATCAGATGACTCTCCTGTTTGCGCTTTCATTTCTCAAGATTGCAATTCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTCACAAAAAGTGTGGGAAAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCTGTGGAGAAGCTTATAGAAGGGGAAGAAGTTGCATGCAGATATGGGGCTCATAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

314

Amino Acids

34.75

Weight (kDa)

5.73

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	110 - 207	1.3e-09	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	191, 544
AclI	AACGTT	1 cut(s)	453
AclWI	GGATC	2 cut(s)	624, 707
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	3 cut(s)	312, 342, 828
AfaI	GTAC	2 cut(s)	104, 731
AfiI	CCNNNNNNNGG	1 cut(s)	680
AflIII	ACRYGT	2 cut(s)	205, 575
AgsI	TTSAA	5 cut(s)	25, 348, 635, 745, 795
AjnI	CCWGG	2 cut(s)	550, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	8 cut(s)	17, 326, 483, 508, 560, 638, 815, 895
AluI	AGCT	8 cut(s)	17, 326, 483, 508, 560, 638, 815, 895
Alw21I	GWGCWC	2 cut(s)	205, 369
Alw26I	GTCTC	1 cut(s)	821
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	624, 707
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	2 cut(s)	253, 868
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	501, 547, 704
ApoI	RAATTY	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	770
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	934
Bbv12I	GWGCWC	2 cut(s)	205, 369
BbvI	GCAGC	3 cut(s)	513, 534, 716
BccI	CCATC	4 cut(s)	60, 271, 347, 427
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	2 cut(s)	552, 588
BcoDI	GTCTC	1 cut(s)	821
BisI	GCNGC	4 cut(s)	502, 545, 548, 705
BlsI	GCNGC	4 cut(s)	503, 546, 549, 706
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	2 cut(s)	552, 588
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	390, 723
BmrFI	CCNGG	2 cut(s)	552, 588
BmsI	GCATC	2 cut(s)	99, 871
BplI	GAGNNNNNCTC	2 cut(s)	679, 711
BpmI	CTGGAG	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
BseBI	CCWGG	2 cut(s)	552, 588
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	71, 419
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	703
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	513, 534, 716
BshFI	GGCC	2 cut(s)	255, 870
BsiHKAI	GWGCWC	2 cut(s)	205, 369
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	821
BsnI	GGCC	2 cut(s)	255, 870
Bsp1286I	GDGCHC	3 cut(s)	205, 369, 934
Bsp143I	GATC	4 cut(s)	172, 286, 616, 712
BspACI	CCGC	2 cut(s)	191, 544
BspANI	GGCC	2 cut(s)	255, 870
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	390, 723
BspPI	GGATC	2 cut(s)	624, 707
BspQI	GCTCTTC	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	4 cut(s)	172, 286, 616, 712
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	552, 588
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	1 cut(s)	357
BstC8I	GCNNGC	5 cut(s)	133, 481, 506, 510, 919
BstDEI	CTNAG	2 cut(s)	119, 484
BstENI	CCTNNNNNAGG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	71, 419
BstHHI	GCGC	1 cut(s)	770
BstKTI	GATC	4 cut(s)	175, 289, 619, 715
BstMAI	GTCTC	1 cut(s)	821
BstMBI	GATC	4 cut(s)	172, 286, 616, 712
BstNI	CCWGG	2 cut(s)	552, 588
BstNSI	RCATGY	4 cut(s)	183, 209, 579, 921
BstSCI	CCNGG	2 cut(s)	550, 586
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	513, 534, 716
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	255, 870
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	71, 419
BtsI	GCAGTG	3 cut(s)	126, 225, 395
BtsIMutI	CAGTG	4 cut(s)	126, 225, 395, 708
Cac8I	GCNNGC	5 cut(s)	133, 481, 506, 510, 919
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	1 cut(s)	770
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	103, 730
CspCI	CAANNNNNGTGG	4 cut(s)	468, 503, 824, 859
CviAII	CATG	5 cut(s)	180, 206, 448, 576, 918
CviQI	GTAC	2 cut(s)	103, 730
DdeI	CTNAG	2 cut(s)	119, 484
DpnI	GATC	4 cut(s)	174, 288, 618, 714
DpnII	GATC	4 cut(s)	172, 286, 616, 712
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	934
Eco57I	CTGAAG	3 cut(s)	312, 342, 828
EcoNI	CCTNNNNNAGG	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	550, 586
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	5 cut(s)	183, 209, 451, 579, 921
FatI	CATG	5 cut(s)	179, 205, 447, 575, 917
Fnu4HI	GCNGC	4 cut(s)	502, 545, 548, 705
FokI	GGATG	2 cut(s)	78, 406
FriOI	GRGCYC	1 cut(s)	934
Fsp4HI	GCNGC	4 cut(s)	502, 545, 548, 705
GlaI	GCGC	1 cut(s)	769
GluI	GCNGC	4 cut(s)	502, 545, 548, 705
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	255, 870
HhaI	GCGC	1 cut(s)	770
Hin1II	CATG	5 cut(s)	183, 209, 451, 579, 921
Hin6I	GCGC	1 cut(s)	768
HinP1I	GCGC	1 cut(s)	768
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	3 cut(s)	324, 481, 893
HinfI	GANTC	5 cut(s)	123, 194, 302, 379, 755
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	103, 169, 203
Hpy188I	TCNGA	5 cut(s)	322, 331, 751, 808, 880
Hpy188III	TCNNGA	4 cut(s)	118, 246, 725, 782
Hpy8I	GTNNAC	3 cut(s)	103, 169, 203
HpyAV	CCTTC	6 cut(s)	46, 266, 813, 881, 885, 896
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	8 cut(s)	183, 203, 373, 479, 704, 789, 917, 921
HpyF3I	CTNAG	2 cut(s)	119, 484
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	183, 209, 451, 579, 921
HspAI	GCGC	1 cut(s)	768
Kzo9I	GATC	4 cut(s)	172, 286, 616, 712
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	3 cut(s)	513, 534, 716
LweI	GCATC	2 cut(s)	99, 871
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	4 cut(s)	174, 288, 618, 714
MboI	GATC	4 cut(s)	172, 286, 616, 712
MboII	GAAGA	8 cut(s)	49, 52, 55, 58, 61, 374, 821, 920
MfeI	CAATTG	1 cut(s)	737
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	3 cut(s)	205, 369, 934
MluCI	AATT	4 cut(s)	341, 627, 737, 790
MlyI	GAGTC	2 cut(s)	203, 749
Mph1103I	ATGCAT	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	552, 588
MunI	CAATTG	1 cut(s)	737
MvaI	CCWGG	2 cut(s)	552, 588
NdeII	GATC	4 cut(s)	172, 286, 616, 712
NlaIII	CATG	5 cut(s)	183, 209, 451, 579, 921
NlaIV	GGNNCC	2 cut(s)	390, 723
NsiI	ATGCAT	1 cut(s)	185
NspI	RCATGY	4 cut(s)	183, 209, 579, 921
PaeI	GCATGC	1 cut(s)	921
PciI	ACATGT	2 cut(s)	205, 575
PciSI	GCTCTTC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	123, 302, 379
PkrI	GCNGC	4 cut(s)	503, 546, 549, 706
PleI	GAGTC	2 cut(s)	202, 749
PpsI	GAGTC	2 cut(s)	202, 749
PscI	ACATGT	2 cut(s)	205, 575
Psp1406I	AACGTT	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	550, 586
PspGI	CCWGG	2 cut(s)	550, 586
PspN4I	GGNNCC	2 cut(s)	390, 723
PspPI	GGNCC	1 cut(s)	253
PsrI	GAACNNNNNNTAC	2 cut(s)	273, 305
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	104, 731
RsaNI	GTAC	2 cut(s)	103, 730
SapI	GCTCTTC	1 cut(s)	357
SatI	GCNGC	4 cut(s)	502, 545, 548, 705
Sau3AI	GATC	4 cut(s)	172, 286, 616, 712
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	2 cut(s)	203, 749
ScrFI	CCNGG	2 cut(s)	552, 588
SduI	GDGCHC	3 cut(s)	205, 369, 934
SfaNI	GCATC	2 cut(s)	99, 871
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
SphI	GCATGC	1 cut(s)	921
Sse9I	AATT	4 cut(s)	341, 627, 737, 790
SsiI	CCGC	2 cut(s)	191, 544
SspI	AATATT	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	550, 586
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	734
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	497, 686
TasI	AATT	4 cut(s)	341, 627, 737, 790
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	3 cut(s)	123, 302, 379
TscAI	CASTG	4 cut(s)	133, 225, 402, 715
TseI	GCWGC	3 cut(s)	501, 547, 704
TspDTI	ATGAA	4 cut(s)	252, 375, 464, 763
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	4 cut(s)	133, 225, 402, 715
VneI	GTGCAC	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	678
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	4 cut(s)	183, 209, 579, 921
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
ZrmI	AGTACT	1 cut(s)	731
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.