Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Forward (+)

17717038 .. 17721282

Gene Structure 4245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGACAGAGTGGTGTACGAGATGCTGTTCCAGAGAATCACCGCCAGCCATTTGCTAAACCCAATGCCTTTGCCTCCTGTCAACGATCTCACATGCATTGTCACTGGATCCACTAGCGGTATTGGCCGCGAAATCGCCAGGCAGTTGGCGGAGTCTGGTGCACATGTTGTAATGGCAGTGAGAAACACCAAAGCAGGTAAGGAGCTGATCCAGAAGTGGCAGAATGAATGGTCAGGAATGGGCCTTCCTCTCAATATCGAGGTGATGGAACTTGATCTACTCTCCTTGGATTCTGTTGTGAGATTTTCTGCCGCGTGGAATGCACGATTGGGACCTCTGCACGTTCTTATCAACAATGCTGGGATATTTTCCATTGGAGAGCCACAAAAATTTTCAAAAGATGGGTATGAAGAGCACTTACAAGTGAATCATCTGGCTCCAGCACTGCTATCAGTATTGCTACTGCCATCCCTTATTAGAGGCTGTCCAAGTCGAATTGTTAATGTCAATTCCGTTATGCATTATGTTGGGTTCGTTGACACAGACGACATGAACGTTGTTTCTGGGAAAAGAAAATATACAAGCTTAGTGGGTTATTCAAGCAGCAAGCTCACACAGATTATGTTTAGTAGTGTCTTACATAAGCGGCTGCCTGCTGAAGCTGGTATTTGTGTAACATGTGTTTCTCCTGGTGTTGTCCAGACAAATGTAGCGAGGGATCTTCCCAGAATCGTTCAAGCTGGTTATCGTTTGATACCCTATTTTATCTTTAGCCCTGAAGAAGGTTCGAGGAGTTCTCTCTTTGCAGCCACTGATCCTCAGGTTCCAGAGTACTGTCAATTGTTGAAATCAGATGACTTTCCTGTTTGCGTTTTCATTTCTCAAGATTGCAATCCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTCACACAAAGTGTGGGAAAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCTGTGGAGAAGCTTATAGCAGGGGAAGAAGTTGCATGCAGATATGGGGCTCATAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

348

Amino Acids

38.35

Weight (kDa)

5.72

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	31 - 140	5.8e-09	KR domain
adh_short	PF00106	32 - 176	7.3e-25	short chain dehydrogenase
adh_short_C2	PF13561	38 - 242	9.5e-17	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
AccII	CGCG	2 cut(s)	129, 314
AciI	CCGC	6 cut(s)	42, 117, 127, 149, 312, 646
AclI	AACGTT	1 cut(s)	555
AclWI	GGATC	5 cut(s)	102, 115, 202, 726, 809
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	3 cut(s)	678, 798, 930
AdeI	CACNNNGTG	1 cut(s)	943
AfaI	GTAC	2 cut(s)	17, 833
AfiI	CCNNNNNNNGG	1 cut(s)	782
AflIII	ACRYGT	2 cut(s)	163, 677
AgsI	TTSAA	4 cut(s)	396, 600, 737, 847
AjnI	CCWGG	2 cut(s)	137, 688
AjuI	GAANNNNNNNTTGG	4 cut(s)	311, 343, 889, 921
AluBI	AGCT	7 cut(s)	205, 585, 610, 662, 740, 917, 997
AluI	AGCT	7 cut(s)	205, 585, 610, 662, 740, 917, 997
Alw21I	GWGCWC	2 cut(s)	163, 417
Alw26I	GTCTC	1 cut(s)	923
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	5 cut(s)	102, 115, 202, 726, 809
AlwNI	CAGNNNCTG	1 cut(s)	812
AoxI	GGCC	3 cut(s)	124, 241, 970
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	3 cut(s)	603, 649, 806
ApoI	RAATTY	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	241, 332
AsuHPI	GGTGA	2 cut(s)	31, 274
AvaII	GGWCC	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	819
BaeGI	GKGCMC	1 cut(s)	163
BamHI	GGATCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	1036
BarI	GAAGNNNNNNTAC	2 cut(s)	402, 434
Bbv12I	GWGCWC	2 cut(s)	163, 417
BbvI	GCAGC	3 cut(s)	615, 636, 818
BccI	CCATC	3 cut(s)	259, 395, 475
BciT130I	CCWGG	2 cut(s)	139, 690
BcoDI	GTCTC	1 cut(s)	923
BfaI	CTAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	6 cut(s)	127, 312, 604, 647, 650, 807
BlsI	GCNGC	6 cut(s)	128, 313, 605, 648, 651, 808
BmcAI	AGTACT	1 cut(s)	833
Bme1390I	CCNGG	2 cut(s)	139, 690
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	241, 332
BmiI	GGNNCC	4 cut(s)	109, 333, 438, 825
BmrFI	CCNGG	2 cut(s)	139, 690
BmsI	GCATC	2 cut(s)	12, 973
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	867
BsaBI	GATNNNNATC	1 cut(s)	891
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse1I	ACTGG	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	819
Bse8I	GATNNNNATC	1 cut(s)	891
BseBI	CCWGG	2 cut(s)	139, 690
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	467
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	805
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	615, 636, 818
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	2 cut(s)	129, 314
BshFI	GGCC	3 cut(s)	126, 243, 972
BsiHKAI	GWGCWC	2 cut(s)	163, 417
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	1 cut(s)	923
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	126, 243, 972
Bsp1286I	GDGCHC	3 cut(s)	163, 417, 1036
Bsp143I	GATC	6 cut(s)	85, 107, 207, 274, 718, 814
BspACI	CCGC	6 cut(s)	42, 117, 127, 149, 312, 646
BspANI	GGCC	3 cut(s)	126, 243, 972
BspCNI	CTCAG	1 cut(s)	832
BspFNI	CGCG	2 cut(s)	129, 314
BspLI	GGNNCC	4 cut(s)	109, 333, 438, 825
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	5 cut(s)	102, 115, 202, 726, 809
BspQI	GCTCTTC	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	6 cut(s)	85, 107, 207, 274, 718, 814
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	139, 690
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	4 cut(s)	46, 608, 654, 1021
BstDEI	CTNAG	2 cut(s)	586, 819
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	1 cut(s)	467
BstFNI	CGCG	2 cut(s)	129, 314
BstKTI	GATC	6 cut(s)	88, 110, 210, 277, 721, 817
BstMAI	GTCTC	1 cut(s)	923
BstMBI	GATC	6 cut(s)	85, 107, 207, 274, 718, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 320
BstNI	CCWGG	2 cut(s)	139, 690
BstNSI	RCATGY	4 cut(s)	96, 167, 681, 1023
BstSCI	CCNGG	2 cut(s)	137, 688
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	2 cut(s)	129, 314
BstV1I	GCAGC	3 cut(s)	615, 636, 818
BstX2I	RGATCY	2 cut(s)	107, 718
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	2 cut(s)	107, 718
Bsu36I	CCTNAGG	1 cut(s)	819
BsuRI	GGCC	3 cut(s)	126, 243, 972
BtsCI	GGATG	1 cut(s)	467
BtsI	GCAGTG	2 cut(s)	183, 443
BtsIMutI	CAGTG	4 cut(s)	102, 183, 443, 810
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	4 cut(s)	46, 608, 654, 1021
CaiI	CAGNNNCTG	1 cut(s)	812
Cfr13I	GGNCC	2 cut(s)	241, 332
Csp6I	GTAC	2 cut(s)	16, 832
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	5 cut(s)	93, 164, 550, 678, 1020
CviQI	GTAC	2 cut(s)	16, 832
DdeI	CTNAG	2 cut(s)	586, 819
DpnI	GATC	6 cut(s)	87, 109, 209, 276, 720, 816
DpnII	GATC	6 cut(s)	85, 107, 207, 274, 718, 814
DraIII	CACNNNGTG	1 cut(s)	943
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	1036
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	3 cut(s)	678, 798, 930
Eco81I	CCTNAGG	1 cut(s)	819
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	137, 688
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	2 cut(s)	98, 522
EcoT38I	GRGCYC	1 cut(s)	1036
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	5 cut(s)	96, 167, 553, 681, 1023
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	5 cut(s)	92, 163, 549, 677, 1019
Fnu4HI	GCNGC	6 cut(s)	127, 312, 604, 647, 650, 807
FokI	GGATG	1 cut(s)	454
FriOI	GRGCYC	1 cut(s)	1036
Fsp4HI	GCNGC	6 cut(s)	127, 312, 604, 647, 650, 807
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	6 cut(s)	127, 312, 604, 647, 650, 807
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	126, 243, 972
Hin1II	CATG	5 cut(s)	96, 167, 553, 681, 1023
HincII	GTYRAC	2 cut(s)	82, 538
HindII	GTYRAC	2 cut(s)	82, 538
HindIII	AAGCTT	2 cut(s)	583, 995
HinfI	GANTC	5 cut(s)	36, 152, 290, 427, 729
HphI	GGTGA	2 cut(s)	31, 274
Hpy166II	GTNNAC	4 cut(s)	16, 82, 161, 538
Hpy188I	TCNGA	3 cut(s)	853, 910, 982
Hpy188III	TCNNGA	6 cut(s)	31, 211, 234, 700, 827, 884
Hpy8I	GTNNAC	4 cut(s)	16, 82, 161, 538
HpyAV	CCTTC	5 cut(s)	254, 776, 915, 983, 987
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	2 cut(s)	342, 555
HpyCH4V	TGCA	9 cut(s)	96, 161, 323, 340, 520, 806, 891, 1019, 1023
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 320
HpyF3I	CTNAG	2 cut(s)	586, 819
HpySE526I	ACGT	2 cut(s)	342, 555
Hsp92II	CATG	5 cut(s)	96, 167, 553, 681, 1023
Kzo9I	GATC	6 cut(s)	85, 107, 207, 274, 718, 814
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	2 cut(s)	202, 442
Lsp1109I	GCAGC	3 cut(s)	615, 636, 818
LweI	GCATC	2 cut(s)	12, 973
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	342, 555
MaeIII	GTNAC	2 cut(s)	100, 673
MalI	GATC	6 cut(s)	87, 109, 209, 276, 720, 816
MboI	GATC	6 cut(s)	85, 107, 207, 274, 718, 814
MboII	GAAGA	5 cut(s)	422, 713, 791, 923, 1022
MfeI	CAATTG	1 cut(s)	839
MflI	RGATCY	2 cut(s)	107, 718
MhlI	GDGCHC	3 cut(s)	163, 417, 1036
MluCI	AATT	4 cut(s)	389, 495, 508, 839
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	920
MnlI	CCTC	8 cut(s)	84, 253, 258, 345, 473, 708, 783, 828
Mph1103I	ATGCAT	2 cut(s)	98, 522
MseI	TTAA	1 cut(s)	501
MspR9I	CCNGG	2 cut(s)	139, 690
MunI	CAATTG	1 cut(s)	839
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	2 cut(s)	139, 690
MvnI	CGCG	2 cut(s)	129, 314
MwoI	GCNNNNNNNGC	2 cut(s)	123, 320
NdeII	GATC	6 cut(s)	85, 107, 207, 274, 718, 814
NlaIII	CATG	5 cut(s)	96, 167, 553, 681, 1023
NlaIV	GGNNCC	4 cut(s)	109, 333, 438, 825
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	2 cut(s)	98, 522
NspI	RCATGY	4 cut(s)	96, 167, 681, 1023
PaeI	GCATGC	1 cut(s)	1023
PciI	ACATGT	2 cut(s)	163, 677
PciSI	GCTCTTC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	4 cut(s)	36, 290, 427, 729
PkrI	GCNGC	6 cut(s)	128, 313, 605, 648, 651, 808
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	332
PscI	ACATGT	2 cut(s)	163, 677
Psp1406I	AACGTT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	137, 688
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	137, 688
PspN4I	GGNNCC	4 cut(s)	109, 333, 438, 825
PspPI	GGNCC	2 cut(s)	241, 332
PspPPI	RGGWCCY	1 cut(s)	332
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	2 cut(s)	107, 718
RsaI	GTAC	2 cut(s)	17, 833
RsaNI	GTAC	2 cut(s)	16, 832
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	6 cut(s)	127, 312, 604, 647, 650, 807
Sau3AI	GATC	6 cut(s)	85, 107, 207, 274, 718, 814
Sau96I	GGNCC	2 cut(s)	241, 332
ScaI	AGTACT	1 cut(s)	833
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	139, 690
SduI	GDGCHC	3 cut(s)	163, 417, 1036
SfaNI	GCATC	2 cut(s)	12, 973
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	882
SmoI	CTYRAG	1 cut(s)	882
SphI	GCATGC	1 cut(s)	1023
Sse9I	AATT	4 cut(s)	389, 495, 508, 839
SsiI	CCGC	6 cut(s)	42, 117, 127, 149, 312, 646
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	137, 688
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	2 cut(s)	345, 558
TaqI	TCGA	3 cut(s)	258, 493, 788
TasI	AATT	4 cut(s)	389, 495, 508, 839
TatI	WGTACW	1 cut(s)	831
TauI	GCSGC	3 cut(s)	129, 314, 649
TfiI	GAWTC	4 cut(s)	36, 290, 427, 729
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	4 cut(s)	109, 183, 450, 817
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	603, 649, 806
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	240, 423, 566, 865
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	4 cut(s)	109, 183, 450, 817
VneI	GTGCAC	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	4 cut(s)	96, 167, 681, 1023
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	833
Zsp2I	ATGCAT	2 cut(s)	98, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.