Rh6CG145200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
18985953 .. 18989711
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG145200.1

Sequence Viewer

Length: 1026 bp
ATGCTGTTCCAGAGAATCACTGCCAGCCATTTGATGAACCCAATGCCTTTGCCTCCTGTCAACGATCTCACATGCATTGTCACTGGATCCACTAGCGGTATCGGCCGCGAAATCGCCAGGCAGTTGGCGGAGTCTGGTGCACATGTTGTAATGGCAGTGAGAAACACCAAAGCAGCTAAGGAGCTGATCCAGAAGTGGCAGAATGAATGGTCAGGAATGGGCCTTCCTCTCAATGTTGAGGTGATGGAACTTGATCTACTCTCCTTGGATTCTGTTGTGAGATTTTCTGAAGAGTGGAATGCACGATTGGGACCTCTGCATGTTCTTATCAACAATGCTGGGATATTTTCTATTGGAGAGCCACAAAAATTTTCAAAAGATGGGTATGAAGAGCACTTGCAAGTGAATCATCTGGCTCCAGCACTGCTATCAGTATTGCTACTGCCATCCCTTATTAGAGGCTCTCCAAGTCGAATTGTTAATGTCAATTCCGTTATGCATTATGTTGGGTTCGTTGACACGGACGACATGAACGTTGTTTCTGGGAAAAGAAAATATACAAGCTTAGTGGGTTATTCGGGCAGCAAGCTCGCACAGATTATGTTTAGTAGTGTCTTACATAAGCGGCTGCCTGCTGAAGCTGGTATTTGTGTAACATGTGTTTCTCCCGGTGTTGTCCAGACAAATGTAGCGAGGGATCTTCCCAGAATCATTCAAGCTGGTTATCGTTTGATACCCTATTTTATCTTTAGCCCTCAAGAAGGTTCGAGGAGTGCTCTCTTTGCAGCCACTGATCCTCAGGTTCCAGAGTACTGTCAATTGTTGAAATCAGATGACTTTCCTGTTTGCGCTTTCATTTCTCAAGATTGCAATCCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTCACACAAAGTGTGGGAAAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCTGTGGAGAAGCTTATAGAAGGGGAAGAAGTTGCATGCAGATATGGGGCTCATAATGAGTAA

Protein Analysis

341

Amino Acids

37.55

Weight (kDa)

5.61

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KR PF08659 24 - 133 1.2e-09 KR domain
adh_short PF00106 25 - 169 3.6e-26 short chain dehydrogenase
adh_short_C2 PF13561 31 - 235 8.6e-18 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 179 - 234 3.9e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AciI CCGC 4 cut(s) 96, 106, 128, 625
AclI AACGTT 1 cut(s) 534
AclWI GGATC 5 cut(s) 81, 94, 181, 705, 788
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 3 cut(s) 309, 657, 909
AdeI CACNNNGTG 1 cut(s) 922
AfaI GTAC 1 cut(s) 812
AfiI CCNNNNNNNGG 1 cut(s) 761
AflIII ACRYGT 2 cut(s) 142, 656
AgsI TTSAA 3 cut(s) 375, 716, 826
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 4 cut(s) 290, 322, 868, 900
AluBI AGCT 8 cut(s) 176, 184, 564, 589, 641, 719, 896, 976
AluI AGCT 8 cut(s) 176, 184, 564, 589, 641, 719, 896, 976
Alw21I GWGCWC 3 cut(s) 142, 396, 778
Alw26I GTCTC 1 cut(s) 902
Alw44I GTGCAC 1 cut(s) 138
AlwI GGATC 5 cut(s) 81, 94, 181, 705, 788
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 3 cut(s) 103, 220, 949
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 4 cut(s) 173, 582, 628, 785
ApoI RAATTY 1 cut(s) 368
AspLEI GCGC 1 cut(s) 851
AspS9I GGNCC 2 cut(s) 220, 311
AsuC2I CCSGG 1 cut(s) 669
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 798
BaeGI GKGCMC 1 cut(s) 142
BamHI GGATCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 1015
Bbv12I GWGCWC 3 cut(s) 142, 396, 778
BbvI GCAGC 4 cut(s) 185, 594, 615, 797
BccI CCATC 3 cut(s) 238, 374, 454
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 1 cut(s) 669
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 1 cut(s) 93
BisI GCNGC 6 cut(s) 106, 174, 583, 626, 629, 786
BlsI GCNGC 6 cut(s) 107, 175, 584, 627, 630, 787
BmcAI AGTACT 1 cut(s) 812
Bme1390I CCNGG 2 cut(s) 118, 669
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 220, 311
BmiI GGNNCC 4 cut(s) 88, 312, 417, 804
BmrFI CCNGG 2 cut(s) 118, 669
BmsI GCATC 1 cut(s) 952
BplI GAGNNNNNCTC 2 cut(s) 760, 792
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 741, 846
BpuMI CCSGG 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 870
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 798
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 446
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMII CTCAG 1 cut(s) 812
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 784
BseSI GKGCMC 1 cut(s) 142
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 4 cut(s) 185, 594, 615, 797
BseYI CCCAGC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 105, 222, 951
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 3 cut(s) 142, 396, 778
BsiSI CCGG 1 cut(s) 669
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 1 cut(s) 902
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 3 cut(s) 105, 222, 951
Bsp1286I GDGCHC 4 cut(s) 142, 396, 778, 1015
Bsp143I GATC 6 cut(s) 64, 86, 186, 253, 697, 793
BspACI CCGC 4 cut(s) 96, 106, 128, 625
BspANI GGCC 3 cut(s) 105, 222, 951
BspCNI CTCAG 1 cut(s) 811
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 4 cut(s) 88, 312, 417, 804
BspPI GGATC 5 cut(s) 81, 94, 181, 705, 788
BspQI GCTCTTC 1 cut(s) 384
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 6 cut(s) 64, 86, 186, 253, 697, 793
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 815
Bst6I CTCTTC 2 cut(s) 285, 384
BstC8I GCNNGC 5 cut(s) 25, 587, 591, 633, 1000
BstDEI CTNAG 3 cut(s) 177, 565, 798
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 851
BstKTI GATC 6 cut(s) 67, 89, 189, 256, 700, 796
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 6 cut(s) 64, 86, 186, 253, 697, 793
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 102, 782
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 5 cut(s) 75, 146, 323, 660, 1002
BstSCI CCNGG 2 cut(s) 116, 667
BstSLI GKGCMC 1 cut(s) 142
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 4 cut(s) 185, 594, 615, 797
BstX2I RGATCY 2 cut(s) 86, 697
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 86, 697
BstZI CGGCCG 1 cut(s) 103
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 3 cut(s) 105, 222, 951
BtsCI GGATG 1 cut(s) 446
BtsI GCAGTG 3 cut(s) 18, 162, 422
BtsIMutI CAGTG 5 cut(s) 18, 81, 162, 422, 789
Cac8I GCNNGC 5 cut(s) 25, 587, 591, 633, 1000
CaiI CAGNNNCTG 1 cut(s) 791
CfoI GCGC 1 cut(s) 851
Cfr13I GGNCC 2 cut(s) 220, 311
Csp6I GTAC 1 cut(s) 811
CspCI CAANNNNNGTGG 2 cut(s) 549, 584
CviAII CATG 6 cut(s) 72, 143, 320, 529, 657, 999
CviQI GTAC 1 cut(s) 811
DdeI CTNAG 3 cut(s) 177, 565, 798
DpnI GATC 6 cut(s) 66, 88, 188, 255, 699, 795
DpnII GATC 6 cut(s) 64, 86, 186, 253, 697, 793
DraIII CACNNNGTG 1 cut(s) 922
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 285, 384
EarI CTCTTC 2 cut(s) 285, 384
EciI GGCGGA 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 1015
Eco47I GGWCC 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 103
Eco57I CTGAAG 3 cut(s) 309, 657, 909
Eco81I CCTNAGG 1 cut(s) 798
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 2 cut(s) 77, 501
EcoT38I GRGCYC 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 6 cut(s) 75, 146, 323, 532, 660, 1002
FaqI GGGAC 1 cut(s) 324
FatI CATG 6 cut(s) 71, 142, 319, 528, 656, 998
Fnu4HI GCNGC 6 cut(s) 106, 174, 583, 626, 629, 786
FokI GGATG 1 cut(s) 433
FriOI GRGCYC 1 cut(s) 1015
Fsp4HI GCNGC 6 cut(s) 106, 174, 583, 626, 629, 786
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 850
GluI GCNGC 6 cut(s) 106, 174, 583, 626, 629, 786
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 3 cut(s) 105, 222, 951
HapII CCGG 1 cut(s) 669
HhaI GCGC 1 cut(s) 851
Hin1II CATG 6 cut(s) 75, 146, 323, 532, 660, 1002
Hin6I GCGC 1 cut(s) 849
HinP1I GCGC 1 cut(s) 849
HincII GTYRAC 2 cut(s) 61, 517
HindII GTYRAC 2 cut(s) 61, 517
HindIII AAGCTT 2 cut(s) 562, 974
HinfI GANTC 5 cut(s) 15, 131, 269, 406, 708
HpaII CCGG 1 cut(s) 669
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 61, 140, 517
Hpy188I TCNGA 4 cut(s) 289, 832, 889, 961
Hpy188III TCNNGA 7 cut(s) 10, 190, 213, 679, 758, 806, 863
Hpy8I GTNNAC 3 cut(s) 61, 140, 517
HpyAV CCTTC 6 cut(s) 233, 755, 894, 962, 966, 977
HpyCH4III ACNGT 1 cut(s) 815
HpyCH4IV ACGT 1 cut(s) 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 782
HpyF3I CTNAG 3 cut(s) 177, 565, 798
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 6 cut(s) 75, 146, 323, 532, 660, 1002
HspAI GCGC 1 cut(s) 849
Kzo9I GATC 6 cut(s) 64, 86, 186, 253, 697, 793
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 2 cut(s) 181, 421
Lsp1109I GCAGC 4 cut(s) 185, 594, 615, 797
LweI GCATC 1 cut(s) 952
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 2 cut(s) 79, 652
MalI GATC 6 cut(s) 66, 88, 188, 255, 699, 795
MboI GATC 6 cut(s) 64, 86, 186, 253, 697, 793
MboII GAAGA 5 cut(s) 302, 401, 692, 902, 1001
MfeI CAATTG 1 cut(s) 818
MflI RGATCY 2 cut(s) 86, 697
MhlI GDGCHC 4 cut(s) 142, 396, 778, 1015
MluCI AATT 4 cut(s) 368, 474, 487, 818
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 899
MnlI CCTC 9 cut(s) 63, 232, 237, 324, 452, 687, 762, 765, 807
Mph1103I ATGCAT 2 cut(s) 77, 501
MseI TTAA 1 cut(s) 480
MspI CCGG 1 cut(s) 669
MspR9I CCNGG 2 cut(s) 118, 669
MunI CAATTG 1 cut(s) 818
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 102, 782
NciI CCSGG 1 cut(s) 669
NdeII GATC 6 cut(s) 64, 86, 186, 253, 697, 793
NlaIII CATG 6 cut(s) 75, 146, 323, 532, 660, 1002
NlaIV GGNNCC 4 cut(s) 88, 312, 417, 804
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 2 cut(s) 77, 501
NspI RCATGY 5 cut(s) 75, 146, 323, 660, 1002
PaeI GCATGC 1 cut(s) 1002
PciI ACATGT 2 cut(s) 142, 656
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 4 cut(s) 15, 269, 406, 708
PkrI GCNGC 6 cut(s) 107, 175, 584, 627, 630, 787
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 311
PscI ACATGT 2 cut(s) 142, 656
Psp1406I AACGTT 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 4 cut(s) 88, 312, 417, 804
PspPI GGNCC 2 cut(s) 220, 311
PspPPI RGGWCCY 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 240, 272
PstNI CAGNNNCTG 1 cut(s) 791
PsuI RGATCY 2 cut(s) 86, 697
RsaI GTAC 1 cut(s) 812
RsaNI GTAC 1 cut(s) 811
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 6 cut(s) 106, 174, 583, 626, 629, 786
Sau3AI GATC 6 cut(s) 64, 86, 186, 253, 697, 793
Sau96I GGNCC 2 cut(s) 220, 311
ScaI AGTACT 1 cut(s) 812
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 118, 669
SduI GDGCHC 4 cut(s) 142, 396, 778, 1015
SfaNI GCATC 1 cut(s) 952
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 756, 861
SmoI CTYRAG 2 cut(s) 756, 861
SphI GCATGC 1 cut(s) 1002
Sse9I AATT 4 cut(s) 368, 474, 487, 818
SsiI CCGC 4 cut(s) 96, 106, 128, 625
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 116, 667
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 815
TaiI ACGT 1 cut(s) 537
TaqI TCGA 2 cut(s) 472, 767
TasI AATT 4 cut(s) 368, 474, 487, 818
TatI WGTACW 1 cut(s) 810
TauI GCSGC 2 cut(s) 108, 628
TfiI GAWTC 4 cut(s) 15, 269, 406, 708
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 5 cut(s) 25, 88, 162, 429, 796
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 4 cut(s) 173, 582, 628, 785
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 5 cut(s) 50, 219, 402, 545, 844
TspGWI ACGGA 2 cut(s) 481, 536
TspRI CASTG 5 cut(s) 25, 88, 162, 429, 796
VneI GTGCAC 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 1 cut(s) 368
XceI RCATGY 5 cut(s) 75, 146, 323, 660, 1002
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 812
Zsp2I ATGCAT 2 cut(s) 77, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.