Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Reverse (-)

22824286 .. 22825406

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGACCACATCATCTGATTTGAAAGAGGAAGTGAAGAAGAAGAGGAAGAAGGAGGGAATGGGATGGATAGAGTGGTTGAGAGGTTTGTTCTATGTGGTGTATGAGATGCCGTTCCAGAGAATCACTGCCAGCCATTTGCAAATCCCAATGCCTTTGCCTCCTGTCAACCATCTCACATGCATTGTCACTGGATCCACTAGCGGTATCGGCTGCGAAATTGCCAGGCAGTTGGCGGAGGCCGGTGCACATGTTGTAATGGCAGTGAAAAACACCAAAGCAGCTAAGGAGCTGCTCCAGAAGTGGCAAAATGAATGGTCTGGAGTCGGCCTTCCTCTCAATATCGAGGTAATGGAACTTGATCTACTCTCCTTGGATTCTGTTGTGAGATTTTCTGAAGCGTGGAATGCACGGTTGGGACCTCTGCATGTTCTTATCAATAATGCTGGGAGATTTACCATTGGAGATACTGTAATGGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

162

Amino Acids

17.9

Weight (kDa)

7.81

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	60 - 151	1.8e-07	KR domain
adh_short	PF00106	61 - 151	9e-16	short chain dehydrogenase
adh_short_C2	PF13561	67 - 152	1.7e-09	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	204, 236
AclWI	GGATC	2 cut(s)	189, 202
AcuI	CTGAAG	1 cut(s)	417
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	3 cut(s)	284, 292, 483
AluI	AGCT	3 cut(s)	284, 292, 483
Alw21I	GWGCWC	1 cut(s)	250
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	189, 202
AoxI	GGCC	2 cut(s)	240, 328
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	213, 281, 292
AspS9I	GGNCC	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	200, 279, 293
BccI	CCATC	2 cut(s)	60, 180
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	226
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	214, 282, 293
BlsI	GCNGC	3 cut(s)	215, 283, 294
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	196, 420
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	99
BpmI	CTGGAG	2 cut(s)	281, 342
Bpu10I	CCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	3 cut(s)	200, 279, 293
BseYI	CCCAGC	1 cut(s)	446
BshFI	GGCC	2 cut(s)	242, 330
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	242, 330
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	194, 361
BspACI	CCGC	2 cut(s)	204, 236
BspANI	GGCC	2 cut(s)	242, 330
BspLI	GGNNCC	2 cut(s)	196, 420
BspPI	GGATC	2 cut(s)	189, 202
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	194, 361
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	414, 472
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	197, 364
BstMBI	GATC	2 cut(s)	194, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 407
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	3 cut(s)	183, 254, 431
BstSCI	CCNGG	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	200, 279, 293
BstX2I	RGATCY	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	242, 330
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	2 cut(s)	126, 270
BtsIMutI	CAGTG	3 cut(s)	126, 189, 270
Cac8I	GCNNGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	419
CviAII	CATG	3 cut(s)	180, 251, 428
CviJI	RGCY	7 cut(s)	135, 213, 242, 284, 292, 330, 483
CviKI_1	RGCY	7 cut(s)	135, 213, 242, 284, 292, 330, 483
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	196, 363
DpnII	GATC	2 cut(s)	194, 361
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	3 cut(s)	183, 254, 431
FaiI	YATR	5 cut(s)	96, 105, 181, 252, 429
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	3 cut(s)	179, 250, 427
Fnu4HI	GCNGC	3 cut(s)	214, 282, 293
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	214, 282, 293
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	3 cut(s)	214, 282, 293
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	2 cut(s)	281, 342
HaeIII	GGCC	2 cut(s)	242, 330
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	3 cut(s)	183, 254, 431
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	123, 324, 377
HpaII	CCGG	1 cut(s)	243
Hpy166II	GTNNAC	2 cut(s)	169, 248
Hpy188I	TCNGA	2 cut(s)	19, 397
Hpy188III	TCNNGA	3 cut(s)	118, 298, 321
Hpy8I	GTNNAC	2 cut(s)	169, 248
HpyAV	CCTTC	2 cut(s)	46, 341
HpyCH4III	ACNGT	2 cut(s)	414, 472
HpyCH4V	TGCA	5 cut(s)	142, 183, 248, 410, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 407
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	183, 254, 431
Kzo9I	GATC	2 cut(s)	194, 361
LmnI	GCTCC	2 cut(s)	289, 300
Lsp1109I	GCAGC	3 cut(s)	200, 279, 293
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	196, 363
MboI	GATC	2 cut(s)	194, 361
MboII	GAAGA	4 cut(s)	49, 52, 55, 61
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	333
MnlI	CCTC	9 cut(s)	22, 39, 49, 77, 171, 232, 340, 345, 432
Mph1103I	ATGCAT	1 cut(s)	185
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	226
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	210, 407
NdeII	GATC	2 cut(s)	194, 361
NlaIII	CATG	3 cut(s)	183, 254, 431
NlaIV	GGNNCC	2 cut(s)	196, 420
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	185
NspI	RCATGY	3 cut(s)	183, 254, 431
PciI	ACATGT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	123, 377
PkrI	GCNGC	3 cut(s)	215, 283, 294
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	419
PscI	ACATGT	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	196, 420
PspPI	GGNCC	1 cut(s)	419
PspPPI	RGGWCCY	1 cut(s)	419
PsrI	GAACNNNNNNTAC	2 cut(s)	348, 380
PsuI	RGATCY	1 cut(s)	194
SatI	GCNGC	3 cut(s)	214, 282, 293
Sau3AI	GATC	2 cut(s)	194, 361
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	6 cut(s)	88, 286, 294, 351, 424, 485
SfaNI	GCATC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	2 cut(s)	204, 236
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	414, 472
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	123, 377
TscAI	CASTG	3 cut(s)	133, 196, 270
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	3 cut(s)	213, 281, 292
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	133, 196, 270
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	419
XceI	RCATGY	3 cut(s)	183, 254, 431
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.