Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002204

Physical Location & Seq

Genomic Coordinates Forward (+)

3365317 .. 3373645

Gene Structure 8329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0028300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGAGCTTCTCCGCAAAGCCACAGCCACTCGCCCTAATCTCATGCACGCCTCACTCCCGCTCCCTCCGCCGCGACTTCCTCGGGTGCGCCCACAGCCTCCGCCCCCTCGCCGGCGGCCTCAGGTCGCTCAGGAAGAACCGGAGCCCCGCCGGCGCCGGCGGACGTCAGAATCCGCCGCCGCGGTTGTTGATTAAAGCGTCGCTCGGTTCTCACTCGATTCTGGTGTTGGTCGCGGTGGTGACGTTCTCGGCGGTCTCTATTGTCTACTTCAATCGGTCGGTGAAGCCGAAGAAGAGAGAGGTTAGTGGTGAAGTTAAAGTTCCGGTGGAAGATCAGAGTATTGATTTTGATGCTTTGAAAGATGAGATTAGAGAGGCGAGGGAGGAGGAAGAGGCTTCTTCTTCTTCTCCGGTTCTGCAGTTTCACAATTCGTCTGTGATTTCTGCTCAGGAGTCGTCGCCGTCTCTTTCACCTTTGGTGTTTGAATCCACGGCTGTGCTTCAGCCGCTTCATTTTCCGACGGAAGTCACTGAGTTTGATAAACTTGAGCCTCTTTTCGAGTTGCCGAATCTGATGGGCGACTCTGATTTTGGCTCTGTGACTGTGAGTGATGAGGAAGTCGTCACTGAGTCACCTTCTGTGTCTGGAAGTGATGAGGAGAGCAGTGAGGTTGGTGAAGCTAATGGCTTTGGATTACGTAATGGAGAATCGGATAGAGAAGAGATTCACATGTTCTATGAGGCCAACAAGTCTGAGATGAAGTTGGATGATGATAAGTTCTCTTCGTTTCTGAGAAATAGCACCCTCACAAGATCAGATTCGTTTCGACAAGTTTCGCATCACAGTACTACAGAGAATGCAGAAGGCAAGATACCTAATCACAAAGAAGGCCATGTCCGCAGCAGAGAAGACTTGGGAAACGGCAATGGATATAATGGACATGTAGCAGATAAAGAACTAAGACATTTGCCTAAAAAGAACCATAAGACTGTGCCCCAACCGAATGGAATACATACAAGCGACGCACATTATGTTTCCGAGCAATTAAGTGCTTACCATCGATTGCTGAAGGATGGGAGGTTATCCGACTCTTTAAGTTTGCTTGAAGATTTGGAGAAAAAGGATTTGTTGGATATGAATAAGGTTTATCATGGAAGGTTTTTTGAAACCTGCAAAAAGAAAAAGGCTGTTGATCAAGCTTTTCGTTTCATCAAACTGATTCCAAATCCAACAATGAGTACATATAATATGCTTATGTCTGTCTGTGCGAGTGCTCAAGATTCAGAGGGTGCTTTCAATGTTCTGGGACTTGTCCGGGAGGCTGGGCTGAGAGTTGATTGCAAACTTTACACTACTCTGATATCAACATGTGCGAAAAGTGGAAAAGTCTACACTATGTTTGATGTCTTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTGATGGTTGTGGCAGAGCTGGGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAAGTGAAGCCAGATCGAGTTGTATTCAATGCGCTTATTACTGCATGCGGTCAATCAGGAGCAGTTGACCGTGCTTTTGATGTCTTAGAAGAAATGAAGGCAGAGACACAGCCTATAGAACCTGATCACACAACTGTTGGTGCACTAATAAAAGCATGCGCAAATGATGGTCAGGTTGAAAGGGCACGTGAAGTGTATAAGATGATTCATAAATACAAGATTAAGGGTAGTTCTGAGGTTTACACCATAGCTGTTAATTGTTGCAGCCTGACTGGTGATTGGGACTTTGCTTGCACTGTATATGATGACATGACCAGGAATGGTGTGGTCCCTGATGAGATGTTCCTCAGTGCATTAATAGATGTTGCTGGGCATGCTGGAAAGCTAGATGCTGCCTTTGAAATCATACAGGAAGCCAGAAATCGAGGAATACAAGTTGGAACTGTATCATATAGCTCATTGATGGGCGCATGTAGCAATGCCAAAAATTGGCAGAAAGCACTGGAGCTCTATGAGGATCTTAAGTCAGCTAAAATTGAGCAGACTGTTTCAACTGTCAATGCTTTGATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGAAGTTCTGTCGGAAATGAAGAGTATAGGACTGCGTGCAAACAGTATAACATACTCCATACTTGTAGTGGCAAGTGAAAAGAAGGATGATCTAGACGCTGGCCTGATGCTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAACCTTGTCATGTGTAGATGCATTATAGGCATGTGCTTACGGAGATCTGAGAAGGCATGTACACTGGGTGAAACTGTCTTGCCGCTTGACTCAGGCCGACCGCAAGTTGATAGTAAATGGGCATCAGTGGCCTTAATGGTCTATCGGAAAACTATTGTAGCTGGTGCTATTCCTACCATTGAAATTATATCACAAGTTTTGGGATGCTTGCAGCTCCCTTTTGATGCATCATTTAAGAAGAGAGTTATTGAGAATCTTGGTGTAACTGCCAACACTTCAAGACCTTCAAAACTCTGTTCATTGATAGATGGGTTTGGTGAATATGATCCTCGTGCATTTTCATTACTTGAGGAAGCTGCTTCACTTGGAATTGTTCCATGTGTATCCTTCAAAGTTAATCCCATTGTTGTTGATGCAAAGAAGTTGCAACTTCATACTGCTAAGGTCTACATCTTGACTGTTCTGAGAGGTCTCAAACATCGGCTTGCTGCTGGTTCGAAGTTGCCCAACATGACCATTTTACTGCCTGTAGAAAAGACACAAATTTTGTCTCCCAAGGGGAAGATGAAGACAATCTACCTTTCAGGAAGGGTTGGCCAGTCAGTTGCAGCATTATTGAGAAGGCTTGGGCTACATTACCAAGGAAATGAATCACGTGGAAAGATAAGAATCAGTGGGTTAACCATGAAAAGATGGTTTCAGCCAAAGCTTGCTTCACCATTCACTGGGAAACCGGAAGAATTAGGCTCATCCCAGCTACGGCTGGGGAAAGGAATCACGCATCAGCAGCGCAATATTCGAACTGGAAATTTTTCCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

1036

Amino Acids

113.61

Weight (kDa)

8.19

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	413 - 584	1.9e-17	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	439 - 493	1.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	449 - 493	3.9e-12	PPR repeat family
TPR_24	PF23276	453 - 579	2.5e-14	Fungal tetratrico peptide repeats
PPR_3	PF13812	469 - 529	1.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	477 - 502	2.6e-06	PPR repeat
PPR_2	PF13041	487 - 527	1e-05	PPR repeat family
PPR_1	PF12854	512 - 544	8.9e-07	PPR repeat
PPR_2	PF13041	515 - 566	8e-09	PPR repeat family
TPR_24	PF23276	560 - 684	3.6e-08	Fungal tetratrico peptide repeats
PPR_long	PF17177	589 - 743	8.1e-13	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	596 - 718	1.6e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	646 - 704	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	658 - 706	2e-08	PPR repeat family
PPR_2	PF13041	693 - 736	1.3e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27760 AT5G53090 AT5G53100
fragaria_vesca	FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31670 FvH4_5g31671
malus_domestica	MD02G1050600.v1.1 MD02G1208700.v1.1 MD06G1238500.v1.1 MD14G1244800.v1.1 MD16G1170300.v1.1
prunus_persica	Prupe.5G242400_v2.0.a1
pyrus_communis	pycom06g21400 pycom14g20600
rosa_chinensis	RchiOBHm_Chr6g0266921 RchiOBHm_Chr7g0227471
rosa_laevigata	RLG00000001643 RLG00000014057
rosa_multiflora	Rmu_sc0001772.1_g000037 Rmu_sc0001772.1_g000038 Rmu_ssc0000486.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232120 Rroxscaffold_7G00201290
rosa_rugosa	Rorug06G0028300 Rorug06G0028400
rosa_samantha	Rh6AG149400 Rh6BG150300 Rh6CG145200 Rh6DG134500 Rh7AG394300 Rh7CG413400 Rh7DG390500
rosa_wichuraiana	Rw6G012920 Rw7G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
Acc16I	TGCGCA	1 cut(s)	1693
Acc36I	ACCTGC	1 cut(s)	1178
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	3 cut(s)	1417, 2022, 3011
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	3 cut(s)	264, 1389, 2733
AccII	CGCG	3 cut(s)	72, 181, 233
AclWI	GGATC	3 cut(s)	2058, 2130, 2606
AcoI	YGGCCR	1 cut(s)	2881
AcsI	RAATTY	2 cut(s)	2829, 3094
AcuI	CTGAAG	2 cut(s)	485, 1088
AcvI	CACGTG	2 cut(s)	1721, 2942
AcyI	GRCGYC	2 cut(s)	153, 163
AdeI	CACNNNGTG	1 cut(s)	2354
AfaI	GTAC	3 cut(s)	847, 1240, 2347
AfiI	CCNNNNNNNGG	5 cut(s)	110, 1417, 2022, 3011, 3045
AflII	CTTAAG	1 cut(s)	2054
AflIII	ACRYGT	3 cut(s)	729, 940, 1367
AjnI	CCWGG	1 cut(s)	1847
AjuI	GAANNNNNNNTTGG	2 cut(s)	2983, 3015
AleI	CACNNNNGTG	1 cut(s)	494
Alw21I	GWGCWC	3 cut(s)	1276, 1678, 2043
Alw26I	GTCTC	5 cut(s)	259, 468, 1631, 2762, 2841
Alw44I	GTGCAC	1 cut(s)	1674
AlwI	GGATC	3 cut(s)	2058, 2130, 2606
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	7 cut(s)	115, 741, 889, 2242, 2380, 2415, 2881
ApaLI	GTGCAC	1 cut(s)	1674
ApeKI	GCWGC	8 cut(s)	900, 1797, 1925, 2497, 2642, 2774, 2894, 3073
ApoI	RAATTY	2 cut(s)	2829, 3094
ArsI	GACNNNNNNTTYG	6 cut(s)	572, 604, 1592, 1624, 2815, 2847
AseI	ATTAAT	1 cut(s)	1889
Asp700I	GAANNNNTTC	2 cut(s)	723, 3097
AspLEI	GCGC	6 cut(s)	89, 155, 1567, 1694, 2003, 3078
AspS9I	GGNCC	1 cut(s)	1861
AsuC2I	CCSGG	1 cut(s)	1316
AsuII	TTCGAA	2 cut(s)	2783, 3085
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	1861
AxyI	CCTNAGG	1 cut(s)	119
BaeGI	GKGCMC	4 cut(s)	996, 1462, 1678, 1720
BalI	TGGCCA	1 cut(s)	2883
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	146, 2043
BarI	GAAGNNNNNNTAC	4 cut(s)	855, 887, 2846, 2878
BauI	CACGAG	1 cut(s)	2616
BbrPI	CACGTG	2 cut(s)	1721, 2942
BbsI	GAAGAC	3 cut(s)	915, 1399, 2861
Bbv12I	GWGCWC	3 cut(s)	1276, 1678, 2043
BbvI	GCAGC	8 cut(s)	912, 1809, 1912, 2509, 2629, 2761, 2906, 3085
BceAI	ACGGC	4 cut(s)	445, 507, 937, 3062
BciT130I	CCWGG	1 cut(s)	1849
BciVI	GTATCC	1 cut(s)	2680
BclI	TGATCA	2 cut(s)	1192, 1657
BcnI	CCSGG	1 cut(s)	1316
BcoDI	GTCTC	5 cut(s)	259, 468, 1631, 2762, 2841
BfaI	CTAG	2 cut(s)	1919, 2234
BfmI	CTRYAG	5 cut(s)	416, 849, 1647, 2129, 2814
BfoI	RGCGCY	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	2054
BfuAI	ACCTGC	1 cut(s)	1178
BfuI	GTATCC	1 cut(s)	2680
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	2330
BmcAI	AGTACT	1 cut(s)	847
Bme1390I	CCNGG	2 cut(s)	1316, 1849
Bme18I	GGWCC	1 cut(s)	1861
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	1861
BmiI	GGNNCC	3 cut(s)	143, 154, 1863
BmrFI	CCNGG	2 cut(s)	1316, 1849
BmrI	ACTGGG	2 cut(s)	2360, 3021
BmuI	ACTGGG	2 cut(s)	2360, 3021
BoxI	GACNNNNGTC	1 cut(s)	524
BpiI	GAAGAC	3 cut(s)	915, 1399, 2861
BpmI	CTGGAG	2 cut(s)	1449, 2057
Bpu10I	CCTNAGC	3 cut(s)	128, 447, 2727
Bpu14I	TTCGAA	2 cut(s)	2783, 3085
BpuEI	CTTGAG	4 cut(s)	566, 1260, 2244, 2654
BpuMI	CCSGG	1 cut(s)	1316
Bsa29I	ATCGAT	1 cut(s)	1060
BsaAI	YACGTR	3 cut(s)	698, 1721, 2942
BsaBI	GATNNNNATC	2 cut(s)	2121, 2954
BsaHI	GRCGYC	2 cut(s)	153, 163
BsaI	GGTCTC	2 cut(s)	259, 2762
BsaJI	CCNNGG	6 cut(s)	79, 179, 489, 2841, 2926, 3102
BsaWI	WCCGGW	4 cut(s)	138, 322, 409, 3019
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 1417, 2022, 3011, 3045
Bse118I	RCCGGY	3 cut(s)	110, 149, 155
Bse1I	ACTGG	6 cut(s)	1810, 2040, 2355, 2884, 3016, 3094
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	931, 2017
Bse8I	GATNNNNATC	2 cut(s)	2121, 2954
BseBI	CCWGG	1 cut(s)	1849
BseCI	ATCGAT	1 cut(s)	1060
BseDI	CCNNGG	6 cut(s)	79, 179, 489, 2841, 2926, 3102
BseGI	GGATG	5 cut(s)	772, 1078, 2233, 2495, 3035
BseJI	GATNNNNATC	2 cut(s)	2121, 2954
BseLI	CCNNNNNNNGG	5 cut(s)	110, 1417, 2022, 3011, 3045
BseMI	GCAATG	2 cut(s)	931, 2017
BseNI	ACTGG	6 cut(s)	1810, 2040, 2355, 2884, 3016, 3094
BseRI	GAGGAG	2 cut(s)	398, 671
BseSI	GKGCMC	4 cut(s)	996, 1462, 1678, 1720
BseXI	GCAGC	8 cut(s)	912, 1809, 1912, 2509, 2629, 2761, 2906, 3085
BseYI	CCCAGC	5 cut(s)	1322, 1484, 1901, 3039, 3049
Bsh1236I	CGCG	3 cut(s)	72, 181, 233
Bsh1285I	CGRYCG	2 cut(s)	278, 2387
BshFI	GGCC	7 cut(s)	117, 743, 891, 2244, 2382, 2417, 2883
BshNI	GGYRCC	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	1060
BsiEI	CGRYCG	2 cut(s)	278, 2387
BsiHKAI	GWGCWC	3 cut(s)	1276, 1678, 2043
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	8 cut(s)	111, 139, 150, 156, 323, 410, 1315, 3020
BslFI	GGGAC	3 cut(s)	1320, 1829, 1847
BslI	CCNNNNNNNGG	5 cut(s)	110, 1417, 2022, 3011, 3045
BsmAI	GTCTC	5 cut(s)	259, 468, 1631, 2762, 2841
BsmBI	CGTCTC	1 cut(s)	468
BsmFI	GGGAC	3 cut(s)	1320, 1829, 1847
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	7 cut(s)	117, 743, 891, 2244, 2382, 2417, 2883
Bso31I	GGTCTC	2 cut(s)	259, 2762
BsoBI	CYCGRG	1 cut(s)	80
Bsp119I	TTCGAA	2 cut(s)	2783, 3085
Bsp1286I	GDGCHC	7 cut(s)	146, 996, 1276, 1462, 1678, 1720, 2043
Bsp1407I	TGTACA	1 cut(s)	2345
BspANI	GGCC	7 cut(s)	117, 743, 891, 2244, 2382, 2417, 2883
BspDI	ATCGAT	1 cut(s)	1060
BspFNI	CGCG	3 cut(s)	72, 181, 233
BspLI	GGNNCC	3 cut(s)	143, 154, 1863
BspMAI	CTGCAG	1 cut(s)	420
BspMI	ACCTGC	1 cut(s)	1178
BspPI	GGATC	3 cut(s)	2058, 2130, 2606
BspT104I	TTCGAA	2 cut(s)	2783, 3085
BspT107I	GGYRCC	1 cut(s)	152
BspTI	CTTAAG	1 cut(s)	2054
BspTNI	GGTCTC	2 cut(s)	259, 2762
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	931, 2017
BsrFI	RCCGGY	3 cut(s)	110, 149, 155
BsrGI	TGTACA	1 cut(s)	2345
BsrI	ACTGG	6 cut(s)	1810, 2040, 2355, 2884, 3016, 3094
BssAI	RCCGGY	3 cut(s)	110, 149, 155
BssECI	CCNNGG	6 cut(s)	79, 179, 489, 2841, 2926, 3102
BssNI	GRCGYC	2 cut(s)	153, 163
BssSI	CACGAG	1 cut(s)	2616
BssT1I	CCWWGG	3 cut(s)	2841, 2926, 3102
Bst2BI	CACGAG	1 cut(s)	2616
Bst2UI	CCWGG	1 cut(s)	1849
Bst6I	CTCTTC	6 cut(s)	287, 384, 714, 787, 2156, 2519
BstACI	GRCGYC	2 cut(s)	153, 163
BstAFI	CTTAAG	1 cut(s)	2054
BstAPI	GCANNNNNTGC	1 cut(s)	1508
BstAUI	TGTACA	1 cut(s)	2345
BstBAI	YACGTR	3 cut(s)	698, 1721, 2942
BstBI	TTCGAA	2 cut(s)	2783, 3085
BstDSI	CCRYGG	2 cut(s)	179, 489
BstF5I	GGATG	5 cut(s)	772, 1078, 2233, 2495, 3035
BstFNI	CGCG	3 cut(s)	72, 181, 233
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	6 cut(s)	89, 155, 1567, 1694, 2003, 3078
BstMAI	GTCTC	5 cut(s)	259, 468, 1631, 2762, 2841
BstMCI	CGRYCG	2 cut(s)	278, 2387
BstNI	CCWGG	1 cut(s)	1849
BstNSI	RCATGY	9 cut(s)	733, 944, 1371, 1581, 1692, 1910, 2007, 2320, 2346
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	1314, 1847
BstSFI	CTRYAG	5 cut(s)	416, 849, 1647, 2129, 2814
BstSLI	GKGCMC	4 cut(s)	996, 1462, 1678, 1720
BstSNI	TACGTA	1 cut(s)	698
BstUI	CGCG	3 cut(s)	72, 181, 233
BstV1I	GCAGC	8 cut(s)	912, 1809, 1912, 2509, 2629, 2761, 2906, 3085
BstV2I	GAAGAC	3 cut(s)	915, 1399, 2861
BstX2I	RGATCY	2 cut(s)	2050, 2330
BstXI	CCANNNNNNTGG	1 cut(s)	1004
BstYI	RGATCY	2 cut(s)	2050, 2330
Bsu15I	ATCGAT	1 cut(s)	1060
Bsu36I	CCTNAGG	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	2680
BsuRI	GGCC	7 cut(s)	117, 743, 891, 2244, 2382, 2417, 2883
BsuTUI	ATCGAT	1 cut(s)	1060
BtgI	CCRYGG	2 cut(s)	179, 489
BtsCI	GGATG	5 cut(s)	772, 1078, 2233, 2495, 3035
BtsI	GCAGTG	1 cut(s)	670
BveI	ACCTGC	1 cut(s)	1178
CfoI	GCGC	6 cut(s)	89, 155, 1567, 1694, 2003, 3078
Cfr10I	RCCGGY	3 cut(s)	110, 149, 155
Cfr13I	GGNCC	1 cut(s)	1861
Cfr42I	CCGCGG	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	1060
CseI	GACGC	3 cut(s)	186, 1031, 2246
Csp6I	GTAC	3 cut(s)	846, 1239, 2346
CviQI	GTAC	3 cut(s)	846, 1239, 2346
DinI	GGCGCC	1 cut(s)	154
DraIII	CACNNNGTG	1 cut(s)	2354
EaeI	YGGCCR	1 cut(s)	2881
Eam1104I	CTCTTC	6 cut(s)	287, 384, 714, 787, 2156, 2519
EarI	CTCTTC	6 cut(s)	287, 384, 714, 787, 2156, 2519
EciI	GGCGGA	4 cut(s)	56, 89, 162, 174
Ecl136II	GAGCTC	1 cut(s)	2041
Eco105I	TACGTA	1 cut(s)	698
Eco130I	CCWWGG	3 cut(s)	2841, 2926, 3102
Eco24I	GRGCYC	2 cut(s)	146, 2043
Eco31I	GGTCTC	2 cut(s)	259, 2762
Eco32I	GATATC	1 cut(s)	1362
Eco47I	GGWCC	1 cut(s)	1861
Eco53kI	GAGCTC	1 cut(s)	2041
Eco57I	CTGAAG	2 cut(s)	485, 1088
Eco72I	CACGTG	2 cut(s)	1721, 2942
Eco81I	CCTNAGG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	2041
EcoRII	CCWGG	1 cut(s)	1847
EcoRV	GATATC	1 cut(s)	1362
EcoT14I	CCWWGG	3 cut(s)	2841, 2926, 3102
EcoT22I	ATGCAT	2 cut(s)	2309, 2515
EcoT38I	GRGCYC	2 cut(s)	146, 2043
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	3 cut(s)	2841, 2926, 3102
Esp3I	CGTCTC	1 cut(s)	468
FaqI	GGGAC	3 cut(s)	1320, 1829, 1847
FauI	CCCGC	2 cut(s)	65, 154
FauNDI	CATATG	1 cut(s)	1453
FbaI	TGATCA	2 cut(s)	1192, 1657
FblI	GTMKAC	3 cut(s)	264, 1389, 2733
FokI	GGATG	5 cut(s)	779, 1085, 2240, 2502, 3022
FriOI	GRGCYC	2 cut(s)	146, 2043
FspBI	CTAG	2 cut(s)	1919, 2234
FspI	TGCGCA	1 cut(s)	1693
GlaI	GCGC	6 cut(s)	88, 154, 1566, 1693, 2002, 3077
GsaI	CCCAGC	5 cut(s)	1326, 1488, 1905, 3043, 3053
GsuI	CTGGAG	2 cut(s)	1449, 2057
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	7 cut(s)	117, 743, 891, 2244, 2382, 2417, 2883
HapII	CCGG	8 cut(s)	111, 139, 150, 156, 323, 410, 1315, 3020
HgaI	GACGC	3 cut(s)	186, 1031, 2246
HhaI	GCGC	6 cut(s)	89, 155, 1567, 1694, 2003, 3078
Hin1I	GRCGYC	2 cut(s)	153, 163
Hin6I	GCGC	6 cut(s)	87, 153, 1565, 1692, 2001, 3076
HinP1I	GCGC	6 cut(s)	87, 153, 1565, 1692, 2001, 3076
HincII	GTYRAC	2 cut(s)	1600, 2967
HindII	GTYRAC	2 cut(s)	1600, 2967
HindIII	AAGCTT	2 cut(s)	1197, 2993
HpaI	GTTAAC	1 cut(s)	2967
HpaII	CCGG	8 cut(s)	111, 139, 150, 156, 323, 410, 1315, 3020
Hpy166II	GTNNAC	9 cut(s)	265, 1390, 1447, 1600, 1676, 1774, 2348, 2734, 2967
Hpy188III	TCNNGA	9 cut(s)	130, 449, 645, 1277, 1590, 2234, 2565, 2740, 2871
Hpy8I	GTNNAC	9 cut(s)	265, 1390, 1447, 1600, 1676, 1774, 2348, 2734, 2967
Hpy99I	CGWCG	4 cut(s)	202, 460, 523, 1025
HpyCH4IV	ACGT	5 cut(s)	163, 242, 697, 1720, 2941
HpySE526I	ACGT	5 cut(s)	163, 242, 697, 1720, 2941
Hsp92I	GRCGYC	2 cut(s)	153, 163
HspAI	GCGC	6 cut(s)	87, 153, 1565, 1692, 2001, 3076
KasI	GGCGCC	1 cut(s)	152
KroI	GCCGGC	3 cut(s)	110, 149, 155
KroNI	GCCGGC	3 cut(s)	112, 151, 157
Ksp22I	TGATCA	2 cut(s)	1192, 1657
KspAI	GTTAAC	1 cut(s)	2967
KspI	CCGCGG	1 cut(s)	182
LmnI	GCTCC	6 cut(s)	65, 141, 1592, 2038, 2256, 2505
Lsp1109I	GCAGC	8 cut(s)	912, 1809, 1912, 2509, 2629, 2761, 2906, 3085
MaeI	CTAG	2 cut(s)	1919, 2234
MaeII	ACGT	5 cut(s)	163, 242, 697, 1720, 2941
MaeIII	GTNAC	6 cut(s)	238, 526, 598, 622, 630, 2548
MbiI	CCGCTC	1 cut(s)	60
MflI	RGATCY	2 cut(s)	2050, 2330
MhlI	GDGCHC	7 cut(s)	146, 996, 1276, 1462, 1678, 1720, 2043
MlsI	TGGCCA	1 cut(s)	2883
MluNI	TGGCCA	1 cut(s)	2883
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	5 cut(s)	461, 575, 638, 1082, 2369
MmeI	TCCRAC	7 cut(s)	542, 744, 1110, 1110, 1253, 1951, 2133
Mox20I	TGGCCA	1 cut(s)	2883
Mph1103I	ATGCAT	2 cut(s)	2309, 2515
MreI	CGCCGGCG	3 cut(s)	110, 149, 155
MroNI	GCCGGC	3 cut(s)	110, 149, 155
MroXI	GAANNNNTTC	2 cut(s)	723, 3097
MscI	TGGCCA	1 cut(s)	2883
MslI	CAYNNNNRTG	2 cut(s)	494, 1452
Msp20I	TGGCCA	1 cut(s)	2883
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	2054
MspI	CCGG	8 cut(s)	111, 139, 150, 156, 323, 410, 1315, 3020
MspR9I	CCNGG	2 cut(s)	1316, 1849
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	1 cut(s)	1849
MvnI	CGCG	3 cut(s)	72, 181, 233
NaeI	GCCGGC	3 cut(s)	112, 151, 157
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	1316
NdeI	CATATG	1 cut(s)	1453
NgoMIV	GCCGGC	3 cut(s)	110, 149, 155
NlaIV	GGNNCC	3 cut(s)	143, 154, 1863
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	5 cut(s)	238, 526, 598, 622, 630
NsbI	TGCGCA	1 cut(s)	1693
NsiI	ATGCAT	2 cut(s)	2309, 2515
NspI	RCATGY	9 cut(s)	733, 944, 1371, 1581, 1692, 1910, 2007, 2320, 2346
NspV	TTCGAA	2 cut(s)	2783, 3085
OliI	CACNNNNGTG	1 cut(s)	494
PaeI	GCATGC	3 cut(s)	1581, 1692, 1910
PciI	ACATGT	3 cut(s)	729, 940, 1367
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PctI	GAATGC	1 cut(s)	862
PdiI	GCCGGC	3 cut(s)	112, 151, 157
PdmI	GAANNNNTTC	2 cut(s)	723, 3097
PflMI	CCANNNNNTGG	3 cut(s)	1417, 2022, 3011
PfoI	TCCNGGA	1 cut(s)	1314
PleI	GAGTC	5 cut(s)	460, 575, 637, 1082, 2369
PluTI	GGCGCC	1 cut(s)	156
PmaCI	CACGTG	2 cut(s)	1721, 2942
PmlI	CACGTG	2 cut(s)	1721, 2942
PpsI	GAGTC	5 cut(s)	460, 575, 637, 1082, 2369
Ppu21I	YACGTR	3 cut(s)	698, 1721, 2942
PscI	ACATGT	3 cut(s)	729, 940, 1367
PshAI	GACNNNNGTC	1 cut(s)	524
PshBI	ATTAAT	1 cut(s)	1889
Psp124BI	GAGCTC	1 cut(s)	2043
Psp6I	CCWGG	1 cut(s)	1847
PspCI	CACGTG	2 cut(s)	1721, 2942
PspFI	CCCAGC	5 cut(s)	1322, 1484, 1901, 3039, 3049
PspGI	CCWGG	1 cut(s)	1847
PspN4I	GGNNCC	3 cut(s)	143, 154, 1863
PspPI	GGNCC	1 cut(s)	1861
PstI	CTGCAG	1 cut(s)	420
PsuI	RGATCY	2 cut(s)	2050, 2330
RsaI	GTAC	3 cut(s)	847, 1240, 2347
RsaNI	GTAC	3 cut(s)	846, 1239, 2346
RseI	CAYNNNNRTG	2 cut(s)	494, 1452
SacI	GAGCTC	1 cut(s)	2043
SacII	CCGCGG	1 cut(s)	182
Sau96I	GGNCC	1 cut(s)	1861
ScaI	AGTACT	1 cut(s)	847
SchI	GAGTC	5 cut(s)	461, 575, 638, 1082, 2369
ScrFI	CCNGG	2 cut(s)	1316, 1849
SduI	GDGCHC	7 cut(s)	146, 996, 1276, 1462, 1678, 1720, 2043
SfcI	CTRYAG	5 cut(s)	416, 849, 1647, 2129, 2814
SfoI	GGCGCC	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	182
SfuI	TTCGAA	2 cut(s)	2783, 3085
SgrAI	CRCCGGYG	3 cut(s)	110, 149, 155
SgrBI	CCGCGG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	1861
SmiMI	CAYNNNNRTG	2 cut(s)	494, 1452
SmlI	CTYRAG	5 cut(s)	545, 1275, 2054, 2259, 2633
SmoI	CTYRAG	5 cut(s)	545, 1275, 2054, 2259, 2633
SnaBI	TACGTA	1 cut(s)	698
SphI	GCATGC	3 cut(s)	1581, 1692, 1910
SspDI	GGCGCC	1 cut(s)	152
SspI	AATATT	1 cut(s)	3082
SspMI	CTAG	2 cut(s)	1919, 2234
SstI	GAGCTC	1 cut(s)	2043
StyD4I	CCNGG	2 cut(s)	1314, 1847
StyI	CCWWGG	3 cut(s)	2841, 2926, 3102
TaiI	ACGT	5 cut(s)	166, 245, 700, 1723, 2944
TaqI	TCGA	8 cut(s)	215, 558, 826, 1060, 1549, 1957, 2783, 3085
TaqII	GACCGA	1 cut(s)	264
TatI	WGTACW	3 cut(s)	845, 1238, 2345
TauI	GCSGC	6 cut(s)	72, 117, 178, 181, 508, 2371
TseFI	GTSAC	5 cut(s)	238, 526, 598, 622, 630
TseI	GCWGC	8 cut(s)	900, 1797, 1925, 2497, 2642, 2774, 2894, 3073
Tsp45I	GTSAC	5 cut(s)	238, 526, 598, 622, 630
TspGWI	ACGGA	2 cut(s)	536, 2341
Van91I	CCANNNNNTGG	3 cut(s)	1417, 2022, 3011
Vha464I	CTTAAG	1 cut(s)	2054
VneI	GTGCAC	1 cut(s)	1674
VpaK11BI	GGWCC	1 cut(s)	1861
VspI	ATTAAT	1 cut(s)	1889
XapI	RAATTY	2 cut(s)	2829, 3094
XbaI	TCTAGA	1 cut(s)	2233
XceI	RCATGY	9 cut(s)	733, 944, 1371, 1581, 1692, 1910, 2007, 2320, 2346
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1855, 2206
XmiI	GTMKAC	3 cut(s)	264, 1389, 2733
XmnI	GAANNNNTTC	2 cut(s)	723, 3097
XspI	CTAG	2 cut(s)	1919, 2234
ZraI	GACGTC	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	847
Zsp2I	ATGCAT	2 cut(s)	2309, 2515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.