MD06G1238500.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
36926793 .. 36931196
4404 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1238500.v1.1.491

Sequence Viewer

Length: 1134 bp
ATGGCGGCGTCGGCGGCGTCAAATTCGAAGGAGGAAGTGAAGATGAAGAAGAAGGAAGGATTGGGATGGATAGAGTGGATGAGAGGGTGGTTGTATCTGGCGTACGAGATGCTGTTCCAGAGAATCACGGCCAGCCACTTGCAAAACCCCATGCCTTTGCCTCCCATCAACGATCTCACTTGCATTGTCACTGGATCCACCAGCGGCATCGGCCGCGAAATCGCCAGGCAACTAGCGGAATCAGGCGCGCATGTTGTAATGGCGGTGAGGAATACGAAAGCAGCTAATGAGCTGATCCAGAAGTGGCAAAATGAATGGTCTGGAATGGGGCTTCCTCTCAATATTGAGGTTATGGAACTTGATCTGCTTTCATTGGATTCTGTTGTGAGATTTGCCGAAGCATGGAACGCTCGTTTAGGACCTCTCCATGTTCTTATCAACAATGCTGGGATATTTTCAATTGGAGAGCCGCAAAAGTTTTCTAAAGATGGTTACGAAGAACACTTGCAAGTGAATCATCTGGCTCCAGCGTTGCTATCCGTCTTGCTATTGCCTTCCCTTATTAGAGGATCTCCGAGTCGAATTGTTAATTTGAATTCCGTTATGCATTATGTTGGCTTTGTTGACACAGAAGACATGAACGTTGTTTCCGGGAAAAGAAAATATACAAGCTTAGTGGGTTACTCAAGCAGCAAGTTGGCACAGATTATGTTTAGTAGTGTCCTACATAAGCGGCTGCCTGCTGAATCTGGCATTAGTGTAGTGTGCGTTTCACCTGGAATTGTCCAGACTAATGTTGCAAGGGATCTACCCAGGATTGTTCAGGCTGCGTATCATCTAGTACCTTATTTTATGTTTAGTGCTCAAGAAGGTTCTAGGAGTGCTCTGTTTGCAGCCACTGATCCACAGGTTCCGGAGTACTGTGAATTGTTGAAAACGGATGACTTTCCTGTTTGTGCCTTTATTTCTCAAGATTGCCGTCCAACGAATCCTTCAGAAGAATCGCATAATGTTGACACTTGTCACGAAGTGTGGGAGAAGACATTTGAGATGATTGGCCTTCCTTCTGATGCAGTGGAGAGGCTTATAGAAGGGGAAGAAGTTGCATGCAGATACGGGGCTCATGGGGAGTAG

Protein Analysis

378

Amino Acids

41.73

Weight (kDa)

5.53

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KR PF08659 60 - 170 1.6e-09 KR domain
adh_short PF00106 61 - 205 2.7e-25 short chain dehydrogenase
adh_short_C2 PF13561 67 - 272 5.9e-18 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 215 - 270 2.9e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 216, 248
AccIII TCCGGA 1 cut(s) 913
AciI CCGC 8 cut(s) 5, 14, 204, 214, 236, 263, 470, 733
AclI AACGTT 1 cut(s) 642
AclWI GGATC 6 cut(s) 189, 202, 289, 577, 813, 896
AcoI YGGCCR 2 cut(s) 129, 211
AcsI RAATTY 2 cut(s) 22, 595
AcuI CTGAAG 1 cut(s) 978
AcyI GRCGYC 2 cut(s) 8, 17
AdeI CACNNNGTG 1 cut(s) 1030
AfaI GTAC 3 cut(s) 104, 843, 920
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 3 cut(s) 459, 595, 934
AjnI CCWGG 3 cut(s) 224, 775, 812
AjuI GAANNNNNNNTTGG 4 cut(s) 44, 76, 976, 1008
AloI GAACNNNNNNTCC 2 cut(s) 632, 664
AluBI AGCT 3 cut(s) 284, 292, 672
AluI AGCT 3 cut(s) 284, 292, 672
Alw21I GWGCWC 2 cut(s) 865, 886
AlwI GGATC 6 cut(s) 189, 202, 289, 577, 813, 896
AlwNI CAGNNNCTG 1 cut(s) 899
Aor13HI TCCGGA 1 cut(s) 913
AoxI GGCC 3 cut(s) 129, 211, 1057
ApeKI GCWGC 5 cut(s) 281, 690, 736, 827, 893
ApoI RAATTY 2 cut(s) 22, 595
AspLEI GCGC 2 cut(s) 248, 250
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 2 cut(s) 277, 765
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 419
BamHI GGATCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 1123
BbsI GAAGAC 2 cut(s) 639, 1046
Bbv12I GWGCWC 2 cut(s) 865, 886
BbvI GCAGC 5 cut(s) 293, 702, 723, 814, 905
BccI CCATC 3 cut(s) 60, 173, 482
BceAI ACGGC 2 cut(s) 144, 963
BciT130I CCWGG 3 cut(s) 226, 777, 814
BcnI CCSGG 1 cut(s) 652
BfaI CTAG 3 cut(s) 233, 839, 876
BmcAI AGTACT 1 cut(s) 920
Bme1390I CCNGG 4 cut(s) 226, 652, 777, 814
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 3 cut(s) 196, 525, 912
BmrFI CCNGG 4 cut(s) 226, 652, 777, 814
BmsI GCATC 3 cut(s) 99, 216, 1060
BoxI GACNNNNGTC 1 cut(s) 1020
BpiI GAAGAC 2 cut(s) 639, 1046
BpmI CTGGAG 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 3 cut(s) 670, 849, 954
BpuMI CCSGG 1 cut(s) 652
BsaHI GRCGYC 2 cut(s) 8, 17
BsaJI CCNNGG 1 cut(s) 812
BsaWI WCCGGW 1 cut(s) 913
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 913
BseBI CCWGG 3 cut(s) 226, 777, 814
BseDI CCNNGG 1 cut(s) 812
BseGI GGATG 3 cut(s) 71, 84, 946
BseLI CCNNNNNNNGG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 196
BsePI GCGCGC 1 cut(s) 246
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 5 cut(s) 293, 702, 723, 814, 905
BseYI CCCAGC 1 cut(s) 446
Bsh1236I CGCG 2 cut(s) 216, 248
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 131, 213, 1059
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 865, 886
BsiSI CCGG 2 cut(s) 651, 914
BsiWI CGTACG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 402
BsnI GGCC 3 cut(s) 131, 213, 1059
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 865, 886, 1123
Bsp13I TCCGGA 1 cut(s) 913
Bsp143I GATC 7 cut(s) 172, 194, 294, 361, 569, 805, 901
BspACI CCGC 8 cut(s) 5, 14, 204, 214, 236, 263, 470, 733
BspANI GGCC 3 cut(s) 131, 213, 1059
BspEI TCCGGA 1 cut(s) 913
BspFNI CGCG 2 cut(s) 216, 248
BspLI GGNNCC 3 cut(s) 196, 525, 912
BspPI GGATC 6 cut(s) 189, 202, 289, 577, 813, 896
BspT104I TTCGAA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 812
BssHII GCGCGC 1 cut(s) 246
BssMI GATC 7 cut(s) 172, 194, 294, 361, 569, 805, 901
BssNI GRCGYC 2 cut(s) 8, 17
Bst2UI CCWGG 3 cut(s) 226, 777, 814
Bst4CI ACNGT 1 cut(s) 923
BstACI GRCGYC 2 cut(s) 8, 17
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 4 cut(s) 133, 248, 741, 1108
BstDEI CTNAG 1 cut(s) 673
BstF5I GGATG 3 cut(s) 71, 84, 946
BstFNI CGCG 2 cut(s) 216, 248
BstHHI GCGC 2 cut(s) 248, 250
BstKTI GATC 7 cut(s) 175, 197, 297, 364, 572, 808, 904
BstMBI GATC 7 cut(s) 172, 194, 294, 361, 569, 805, 901
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 6 cut(s) 11, 14, 210, 213, 407, 890
BstNI CCWGG 3 cut(s) 226, 777, 814
BstNSI RCATGY 2 cut(s) 254, 1110
BstPAI GACNNNNGTC 1 cut(s) 1020
BstSCI CCNGG 4 cut(s) 224, 650, 775, 812
BstUI CGCG 2 cut(s) 216, 248
BstV1I GCAGC 5 cut(s) 293, 702, 723, 814, 905
BstV2I GAAGAC 2 cut(s) 639, 1046
BstX2I RGATCY 3 cut(s) 194, 569, 805
BstYI RGATCY 3 cut(s) 194, 569, 805
BstZI CGGCCG 1 cut(s) 211
BsuRI GGCC 3 cut(s) 131, 213, 1059
BtsCI GGATG 3 cut(s) 71, 84, 946
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 3 cut(s) 189, 897, 1080
Cac8I GCNNGC 4 cut(s) 133, 248, 741, 1108
CaiI CAGNNNCTG 1 cut(s) 899
CfoI GCGC 2 cut(s) 248, 250
Cfr13I GGNCC 1 cut(s) 419
CseI GACGC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 103, 842, 919
CspCI CAANNNNNGTGG 2 cut(s) 657, 692
CviAII CATG 7 cut(s) 151, 251, 402, 428, 637, 1107, 1124
CviQI GTAC 3 cut(s) 103, 842, 919
DdeI CTNAG 1 cut(s) 673
DpnI GATC 7 cut(s) 174, 196, 296, 363, 571, 807, 903
DpnII GATC 7 cut(s) 172, 194, 294, 361, 569, 805, 901
DraIII CACNNNGTG 1 cut(s) 1030
EaeI YGGCCR 2 cut(s) 129, 211
EagI CGGCCG 1 cut(s) 211
EclXI CGGCCG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 1123
Eco47I GGWCC 1 cut(s) 419
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 978
EcoO109I RGGNCCY 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 595
EcoRII CCWGG 3 cut(s) 224, 775, 812
EcoT22I ATGCAT 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 1123
FaeI CATG 7 cut(s) 154, 254, 405, 431, 640, 1110, 1127
FatI CATG 7 cut(s) 150, 250, 401, 427, 636, 1106, 1123
FokI GGATG 3 cut(s) 78, 91, 953
FriOI GRGCYC 1 cut(s) 1123
FspBI CTAG 3 cut(s) 233, 839, 876
GlaI GCGC 2 cut(s) 247, 249
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 3 cut(s) 131, 213, 1059
HapII CCGG 2 cut(s) 651, 914
HgaI GACGC 1 cut(s) 6
HhaI GCGC 2 cut(s) 248, 250
Hin1I GRCGYC 2 cut(s) 8, 17
Hin1II CATG 7 cut(s) 154, 254, 405, 431, 640, 1110, 1127
Hin6I GCGC 2 cut(s) 246, 248
HinP1I GCGC 2 cut(s) 246, 248
HincII GTYRAC 2 cut(s) 625, 1015
HindII GTYRAC 2 cut(s) 625, 1015
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 8 cut(s) 123, 239, 377, 514, 577, 746, 988, 1001
HpaII CCGG 2 cut(s) 651, 914
HphI GGTGA 2 cut(s) 277, 765
Hpy166II GTNNAC 2 cut(s) 625, 1015
Hpy188I TCNGA 3 cut(s) 576, 997, 1069
Hpy188III TCNNGA 8 cut(s) 118, 298, 321, 787, 866, 914, 971, 1025
Hpy8I GTNNAC 2 cut(s) 625, 1015
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 9 cut(s) 22, 46, 50, 564, 863, 1002, 1070, 1074, 1085
HpyCH4III ACNGT 1 cut(s) 923
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 9 cut(s) 142, 183, 508, 607, 800, 893, 1073, 1106, 1110
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 14, 210, 213, 407, 890
HpyF3I CTNAG 1 cut(s) 673
HpySE526I ACGT 1 cut(s) 642
Hsp92I GRCGYC 2 cut(s) 8, 17
Hsp92II CATG 7 cut(s) 154, 254, 405, 431, 640, 1110, 1127
HspAI GCGC 2 cut(s) 246, 248
Kpn2I TCCGGA 1 cut(s) 913
Kzo9I GATC 7 cut(s) 172, 194, 294, 361, 569, 805, 901
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 5 cut(s) 293, 702, 723, 814, 905
LweI GCATC 3 cut(s) 99, 216, 1060
MaeI CTAG 3 cut(s) 233, 839, 876
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 4 cut(s) 187, 491, 680, 1022
MalI GATC 7 cut(s) 174, 196, 296, 363, 571, 807, 903
MboI GATC 7 cut(s) 172, 194, 294, 361, 569, 805, 901
MboII GAAGA 8 cut(s) 52, 58, 61, 509, 644, 1010, 1051, 1109
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 3 cut(s) 194, 569, 805
MhlI GDGCHC 3 cut(s) 865, 886, 1123
MluCI AATT 7 cut(s) 22, 459, 582, 589, 595, 780, 926
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 1007
MnlI CCTC 9 cut(s) 25, 77, 171, 261, 340, 345, 432, 560, 1074
Mph1103I ATGCAT 1 cut(s) 609
MroI TCCGGA 1 cut(s) 913
MseI TTAA 1 cut(s) 588
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 2 cut(s) 651, 914
MspR9I CCNGG 4 cut(s) 226, 652, 777, 814
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 3 cut(s) 226, 777, 814
MvnI CGCG 2 cut(s) 216, 248
MwoI GCNNNNNNNGC 6 cut(s) 11, 14, 210, 213, 407, 890
NciI CCSGG 1 cut(s) 652
NdeII GATC 7 cut(s) 172, 194, 294, 361, 569, 805, 901
NlaIII CATG 7 cut(s) 154, 254, 405, 431, 640, 1110, 1127
NlaIV GGNNCC 3 cut(s) 196, 525, 912
NmuCI GTSAC 2 cut(s) 187, 1022
NsiI ATGCAT 1 cut(s) 609
NspI RCATGY 2 cut(s) 254, 1110
NspV TTCGAA 1 cut(s) 26
PaeI GCATGC 1 cut(s) 1110
PauI GCGCGC 1 cut(s) 246
PfeI GAWTC 7 cut(s) 123, 239, 377, 514, 746, 988, 1001
Pfl23II CGTACG 1 cut(s) 102
PfoI TCCNGGA 1 cut(s) 650
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
PpuMI RGGWCCY 1 cut(s) 419
PshAI GACNNNNGTC 1 cut(s) 1020
Psp1406I AACGTT 1 cut(s) 642
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 224, 775, 812
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 3 cut(s) 224, 775, 812
PspLI CGTACG 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 196, 525, 912
PspPI GGNCC 1 cut(s) 419
PspPPI RGGWCCY 1 cut(s) 419
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 3 cut(s) 194, 569, 805
PteI GCGCGC 1 cut(s) 246
RsaI GTAC 3 cut(s) 104, 843, 920
RsaNI GTAC 3 cut(s) 103, 842, 919
SaqAI TTAA 1 cut(s) 588
Sau3AI GATC 7 cut(s) 172, 194, 294, 361, 569, 805, 901
Sau96I GGNCC 1 cut(s) 419
ScaI AGTACT 1 cut(s) 920
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 4 cut(s) 226, 652, 777, 814
SduI GDGCHC 3 cut(s) 865, 886, 1123
SfaNI GCATC 3 cut(s) 99, 216, 1060
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 3 cut(s) 685, 864, 969
SmoI CTYRAG 3 cut(s) 685, 864, 969
SphI GCATGC 1 cut(s) 1110
Sse9I AATT 7 cut(s) 22, 459, 582, 589, 595, 780, 926
SsiI CCGC 8 cut(s) 5, 14, 204, 214, 236, 263, 470, 733
SspI AATATT 1 cut(s) 343
SspMI CTAG 3 cut(s) 233, 839, 876
StyD4I CCNGG 4 cut(s) 224, 650, 775, 812
TaaI ACNGT 1 cut(s) 923
TaiI ACGT 1 cut(s) 645
TaqI TCGA 2 cut(s) 26, 580
TasI AATT 7 cut(s) 22, 459, 582, 589, 595, 780, 926
TatI WGTACW 1 cut(s) 918
TauI GCSGC 6 cut(s) 8, 17, 207, 216, 472, 736
TfiI GAWTC 7 cut(s) 123, 239, 377, 514, 746, 988, 1001
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 3 cut(s) 196, 904, 1080
TseFI GTSAC 2 cut(s) 187, 1022
TseI GCWGC 5 cut(s) 281, 690, 736, 827, 893
Tsp45I GTSAC 2 cut(s) 187, 1022
TspDTI ATGAA 4 cut(s) 59, 327, 360, 653
TspGWI ACGGA 3 cut(s) 529, 589, 953
TspRI CASTG 3 cut(s) 196, 904, 1080
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 22, 595
XceI RCATGY 2 cut(s) 254, 1110
XspI CTAG 3 cut(s) 233, 839, 876
ZrmI AGTACT 1 cut(s) 920
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.