Lariat debranching enzyme, C-terminal domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31770 AT4G31770 |
| fragaria_vesca | FvH4_2g41360 FvH4_6g29560 |
| malus_domestica | MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1 |
| prunus_persica | Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 |
| pyrus_communis | pycom15g04070 |
| rosa_chinensis | RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131 |
| rosa_laevigata | RLG00000011460 RLG00000019443 RLG00000028022 |
| rosa_multiflora | Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00109470 Rroxscaffold_7G00168980 |
| rosa_rugosa | Rorug01G0256500 Rorug02G0323300 Rorug06G0285600 |
| rosa_samantha | Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800 |
| rosa_wichuraiana | Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 470 |
| Acc36I | ACCTGC | 1 cut(s) | 1000 |
| AccBSI | CCGCTC | 1 cut(s) | 415 |
| AciI | CCGC | 7 cut(s) | 111, 415, 500, 571, 629, 872, 1040 |
| AclWI | GGATC | 1 cut(s) | 1030 |
| AcoI | YGGCCR | 2 cut(s) | 208, 416 |
| AcsI | RAATTY | 2 cut(s) | 689, 734 |
| AcuI | CTGAAG | 1 cut(s) | 671 |
| AdeI | CACNNNGTG | 1 cut(s) | 1013 |
| AfaI | GTAC | 3 cut(s) | 162, 200, 990 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 931, 1112 |
| AflIII | ACRYGT | 1 cut(s) | 1012 |
| AgsI | TTSAA | 6 cut(s) | 17, 62, 494, 707, 788, 859 |
| AjnI | CCWGG | 2 cut(s) | 760, 802 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 597, 629 |
| AluBI | AGCT | 3 cut(s) | 674, 946, 1072 |
| AluI | AGCT | 3 cut(s) | 674, 946, 1072 |
| Alw21I | GWGCWC | 2 cut(s) | 437, 1074 |
| Alw26I | GTCTC | 4 cut(s) | 27, 546, 1085, 1239 |
| AlwI | GGATC | 1 cut(s) | 1030 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 803, 992, 1057 |
| AoxI | GGCC | 4 cut(s) | 208, 364, 416, 527 |
| ApeKI | GCWGC | 4 cut(s) | 108, 299, 695, 698 |
| ApoI | RAATTY | 2 cut(s) | 689, 734 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1045, 1077 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 75, 188 |
| AspS9I | GGNCC | 2 cut(s) | 806, 817 |
| AsuHPI | GGTGA | 2 cut(s) | 946, 1095 |
| AsuNHI | GCTAGC | 1 cut(s) | 838 |
| AvaII | GGWCC | 2 cut(s) | 806, 817 |
| BanII | GRGCYC | 1 cut(s) | 1074 |
| Bbv12I | GWGCWC | 2 cut(s) | 437, 1074 |
| BbvI | GCAGC | 4 cut(s) | 95, 286, 682, 685 |
| BccI | CCATC | 5 cut(s) | 446, 713, 1012, 1156, 1207 |
| BceAI | ACGGC | 1 cut(s) | 909 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1115, 1149 |
| BciT130I | CCWGG | 2 cut(s) | 762, 804 |
| BclI | TGATCA | 1 cut(s) | 1234 |
| BcoDI | GTCTC | 4 cut(s) | 27, 546, 1085, 1239 |
| BfaI | CTAG | 5 cut(s) | 38, 165, 641, 839, 947 |
| BfuAI | ACCTGC | 1 cut(s) | 1000 |
| BglII | AGATCT | 1 cut(s) | 1153 |
| BisI | GCNGC | 9 cut(s) | 109, 112, 300, 416, 500, 572, 630, 696, 699 |
| BlsI | GCNGC | 9 cut(s) | 110, 113, 301, 417, 501, 573, 631, 697, 700 |
| BmcAI | AGTACT | 1 cut(s) | 200 |
| Bme1390I | CCNGG | 2 cut(s) | 762, 804 |
| Bme18I | GGWCC | 2 cut(s) | 806, 817 |
| BmgT120I | GGNCC | 2 cut(s) | 806, 817 |
| BmiI | GGNNCC | 2 cut(s) | 808, 1146 |
| BmrFI | CCNGG | 2 cut(s) | 762, 804 |
| BmsI | GCATC | 2 cut(s) | 474, 1240 |
| BmtI | GCTAGC | 1 cut(s) | 842 |
| BpmI | CTGGAG | 1 cut(s) | 351 |
| BsaI | GGTCTC | 2 cut(s) | 27, 1085 |
| BsaJI | CCNNGG | 2 cut(s) | 761, 1075 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 931, 1112 |
| Bse1I | ACTGG | 2 cut(s) | 1106, 1146 |
| Bse3DI | GCAATG | 1 cut(s) | 682 |
| BseBI | CCWGG | 2 cut(s) | 762, 804 |
| BseDI | CCNNGG | 2 cut(s) | 761, 1075 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 931, 1112 |
| BseMI | GCAATG | 1 cut(s) | 682 |
| BseMII | CTCAG | 2 cut(s) | 570, 1023 |
| BseNI | ACTGG | 2 cut(s) | 1106, 1146 |
| BseRI | GAGGAG | 2 cut(s) | 89, 92 |
| BseXI | GCAGC | 4 cut(s) | 95, 286, 682, 685 |
| BshFI | GGCC | 4 cut(s) | 210, 366, 418, 529 |
| BsiHKAI | GWGCWC | 2 cut(s) | 437, 1074 |
| BsiSI | CCGG | 1 cut(s) | 207 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 931, 1112 |
| BsmAI | GTCTC | 4 cut(s) | 27, 546, 1085, 1239 |
| BsmBI | CGTCTC | 1 cut(s) | 1239 |
| BsnI | GGCC | 4 cut(s) | 210, 366, 418, 529 |
| Bso31I | GGTCTC | 2 cut(s) | 27, 1085 |
| Bsp1286I | GDGCHC | 2 cut(s) | 437, 1074 |
| Bsp143I | GATC | 6 cut(s) | 94, 443, 597, 1035, 1153, 1234 |
| BspACI | CCGC | 7 cut(s) | 111, 415, 500, 571, 629, 872, 1040 |
| BspANI | GGCC | 4 cut(s) | 210, 366, 418, 529 |
| BspCNI | CTCAG | 2 cut(s) | 569, 1024 |
| BspHI | TCATGA | 1 cut(s) | 253 |
| BspLI | GGNNCC | 2 cut(s) | 808, 1146 |
| BspMI | ACCTGC | 1 cut(s) | 1000 |
| BspOI | GCTAGC | 1 cut(s) | 842 |
| BspPI | GGATC | 1 cut(s) | 1030 |
| BspQI | GCTCTTC | 1 cut(s) | 489 |
| BspTNI | GGTCTC | 2 cut(s) | 27, 1085 |
| BsrBI | CCGCTC | 1 cut(s) | 415 |
| BsrDI | GCAATG | 1 cut(s) | 682 |
| BsrI | ACTGG | 2 cut(s) | 1106, 1146 |
| BssECI | CCNNGG | 2 cut(s) | 761, 1075 |
| BssMI | GATC | 6 cut(s) | 94, 443, 597, 1035, 1153, 1234 |
| BssT1I | CCWWGG | 1 cut(s) | 1075 |
| Bst2UI | CCWGG | 2 cut(s) | 762, 804 |
| Bst4CI | ACNGT | 2 cut(s) | 398, 988 |
| Bst6I | CTCTTC | 3 cut(s) | 489, 825, 1203 |
| BstC8I | GCNNGC | 1 cut(s) | 840 |
| BstDEI | CTNAG | 2 cut(s) | 556, 1032 |
| BstKTI | GATC | 6 cut(s) | 97, 446, 600, 1038, 1156, 1237 |
| BstMAI | GTCTC | 4 cut(s) | 27, 546, 1085, 1239 |
| BstMBI | GATC | 6 cut(s) | 94, 443, 597, 1035, 1153, 1234 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1142 |
| BstNI | CCWGG | 2 cut(s) | 762, 804 |
| BstSCI | CCNGG | 2 cut(s) | 760, 802 |
| BstV1I | GCAGC | 4 cut(s) | 95, 286, 682, 685 |
| BstX2I | RGATCY | 2 cut(s) | 1035, 1153 |
| BstYI | RGATCY | 2 cut(s) | 1035, 1153 |
| BsuRI | GGCC | 4 cut(s) | 210, 366, 418, 529 |
| BtsI | GCAGTG | 1 cut(s) | 900 |
| BtsIMutI | CAGTG | 4 cut(s) | 540, 732, 900, 1139 |
| BveI | ACCTGC | 1 cut(s) | 1000 |
| Cac8I | GCNNGC | 1 cut(s) | 840 |
| CaiI | CAGNNNCTG | 3 cut(s) | 803, 992, 1057 |
| CciI | TCATGA | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 2 cut(s) | 806, 817 |
| CseI | GACGC | 2 cut(s) | 377, 1063 |
| Csp6I | GTAC | 3 cut(s) | 161, 199, 989 |
| CviAII | CATG | 6 cut(s) | 29, 145, 254, 455, 521, 1254 |
| CviQI | GTAC | 3 cut(s) | 161, 199, 989 |
| DdeI | CTNAG | 2 cut(s) | 556, 1032 |
| DpnI | GATC | 6 cut(s) | 96, 445, 599, 1037, 1155, 1236 |
| DpnII | GATC | 6 cut(s) | 94, 443, 597, 1035, 1153, 1234 |
| DraI | TTTAAA | 1 cut(s) | 964 |
| DraIII | CACNNNGTG | 1 cut(s) | 1013 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 470 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 470 |
| EaeI | YGGCCR | 2 cut(s) | 208, 416 |
| Eam1104I | CTCTTC | 3 cut(s) | 489, 825, 1203 |
| EarI | CTCTTC | 3 cut(s) | 489, 825, 1203 |
| Ecl136II | GAGCTC | 1 cut(s) | 1072 |
| Eco130I | CCWWGG | 1 cut(s) | 1075 |
| Eco24I | GRGCYC | 1 cut(s) | 1074 |
| Eco31I | GGTCTC | 2 cut(s) | 27, 1085 |
| Eco32I | GATATC | 1 cut(s) | 1129 |
| Eco47I | GGWCC | 2 cut(s) | 806, 817 |
| Eco53kI | GAGCTC | 1 cut(s) | 1072 |
| Eco57I | CTGAAG | 1 cut(s) | 671 |
| EcoICRI | GAGCTC | 1 cut(s) | 1072 |
| EcoO109I | RGGNCCY | 1 cut(s) | 817 |
| EcoRII | CCWGG | 2 cut(s) | 760, 802 |
| EcoRV | GATATC | 1 cut(s) | 1129 |
| EcoT14I | CCWWGG | 1 cut(s) | 1075 |
| EcoT22I | ATGCAT | 2 cut(s) | 30, 1255 |
| EcoT38I | GRGCYC | 1 cut(s) | 1074 |
| ErhI | CCWWGG | 1 cut(s) | 1075 |
| Esp3I | CGTCTC | 1 cut(s) | 1239 |
| FaeI | CATG | 6 cut(s) | 32, 148, 257, 458, 524, 1257 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 486, 518 |
| FatI | CATG | 6 cut(s) | 28, 144, 253, 454, 520, 1253 |
| FauI | CCCGC | 2 cut(s) | 879, 1047 |
| FauNDI | CATATG | 1 cut(s) | 1165 |
| FbaI | TGATCA | 1 cut(s) | 1234 |
| Fnu4HI | GCNGC | 9 cut(s) | 109, 112, 300, 416, 500, 572, 630, 696, 699 |
| FriOI | GRGCYC | 1 cut(s) | 1074 |
| Fsp4HI | GCNGC | 9 cut(s) | 109, 112, 300, 416, 500, 572, 630, 696, 699 |
| FspBI | CTAG | 5 cut(s) | 38, 165, 641, 839, 947 |
| GluI | GCNGC | 9 cut(s) | 109, 112, 300, 416, 500, 572, 630, 696, 699 |
| GsuI | CTGGAG | 1 cut(s) | 351 |
| HaeIII | GGCC | 4 cut(s) | 210, 366, 418, 529 |
| HapII | CCGG | 1 cut(s) | 207 |
| HgaI | GACGC | 2 cut(s) | 377, 1063 |
| Hin1II | CATG | 6 cut(s) | 32, 148, 257, 458, 524, 1257 |
| HpaII | CCGG | 1 cut(s) | 207 |
| HphI | GGTGA | 2 cut(s) | 946, 1095 |
| Hpy166II | GTNNAC | 1 cut(s) | 623 |
| Hpy188I | TCNGA | 6 cut(s) | 225, 443, 559, 799, 1153, 1161 |
| Hpy188III | TCNNGA | 7 cut(s) | 193, 254, 402, 461, 475, 593, 1031 |
| Hpy8I | GTNNAC | 1 cut(s) | 623 |
| HpyAV | CCTTC | 2 cut(s) | 11, 767 |
| HpyCH4III | ACNGT | 2 cut(s) | 398, 988 |
| HpyCH4IV | ACGT | 3 cut(s) | 159, 894, 1012 |
| HpyCH4V | TGCA | 6 cut(s) | 11, 28, 487, 687, 995, 1253 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1142 |
| HpyF3I | CTNAG | 2 cut(s) | 556, 1032 |
| HpySE526I | ACGT | 3 cut(s) | 159, 894, 1012 |
| Hsp92II | CATG | 6 cut(s) | 32, 148, 257, 458, 524, 1257 |
| Ksp22I | TGATCA | 1 cut(s) | 1234 |
| Kzo9I | GATC | 6 cut(s) | 94, 443, 597, 1035, 1153, 1234 |
| LguI | GCTCTTC | 1 cut(s) | 489 |
| LmnI | GCTCC | 3 cut(s) | 226, 1077, 1150 |
| Lsp1109I | GCAGC | 4 cut(s) | 95, 286, 682, 685 |
| LweI | GCATC | 2 cut(s) | 474, 1240 |
| MaeI | CTAG | 5 cut(s) | 38, 165, 641, 839, 947 |
| MaeII | ACGT | 3 cut(s) | 159, 894, 1012 |
| MaeIII | GTNAC | 3 cut(s) | 461, 727, 1108 |
| MalI | GATC | 6 cut(s) | 96, 445, 599, 1037, 1155, 1236 |
| MbiI | CCGCTC | 1 cut(s) | 415 |
| MboI | GATC | 6 cut(s) | 94, 443, 597, 1035, 1153, 1234 |
| MboII | GAAGA | 8 cut(s) | 16, 506, 842, 952, 962, 1148, 1187, 1220 |
| MfeI | CAATTG | 2 cut(s) | 12, 1185 |
| MflI | RGATCY | 2 cut(s) | 1035, 1153 |
| MhlI | GDGCHC | 2 cut(s) | 437, 1074 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| MmeI | TCCRAC | 2 cut(s) | 514, 1184 |
| MnlI | CCTC | 9 cut(s) | 110, 113, 250, 595, 666, 755, 808, 930, 1210 |
| Mph1103I | ATGCAT | 2 cut(s) | 30, 1255 |
| MroXI | GAANNNNTTC | 2 cut(s) | 75, 188 |
| MseI | TTAA | 2 cut(s) | 156, 963 |
| MslI | CAYNNNNRTG | 2 cut(s) | 459, 714 |
| MspA1I | CMGCKG | 1 cut(s) | 629 |
| MspI | CCGG | 1 cut(s) | 207 |
| MspR9I | CCNGG | 2 cut(s) | 762, 804 |
| MunI | CAATTG | 2 cut(s) | 12, 1185 |
| MvaI | CCWGG | 2 cut(s) | 762, 804 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1142 |
| NdeI | CATATG | 1 cut(s) | 1165 |
| NdeII | GATC | 6 cut(s) | 94, 443, 597, 1035, 1153, 1234 |
| NheI | GCTAGC | 1 cut(s) | 838 |
| NlaIII | CATG | 6 cut(s) | 32, 148, 257, 458, 524, 1257 |
| NlaIV | GGNNCC | 2 cut(s) | 808, 1146 |
| NmuCI | GTSAC | 2 cut(s) | 461, 727 |
| NsiI | ATGCAT | 2 cut(s) | 30, 1255 |
| PagI | TCATGA | 1 cut(s) | 253 |
| PciSI | GCTCTTC | 1 cut(s) | 489 |
| PdmI | GAANNNNTTC | 2 cut(s) | 75, 188 |
| PfeI | GAWTC | 9 cut(s) | 76, 226, 250, 537, 560, 794, 1022, 1045, 1097 |
| PflFI | GACNNNGTC | 1 cut(s) | 1057 |
| PkrI | GCNGC | 9 cut(s) | 110, 113, 301, 417, 501, 573, 631, 697, 700 |
| PleI | GAGTC | 1 cut(s) | 548 |
| PpsI | GAGTC | 1 cut(s) | 548 |
| PpuMI | RGGWCCY | 1 cut(s) | 817 |
| Psp124BI | GAGCTC | 1 cut(s) | 1074 |
| Psp5II | RGGWCCY | 1 cut(s) | 817 |
| Psp6I | CCWGG | 2 cut(s) | 760, 802 |
| PspGI | CCWGG | 2 cut(s) | 760, 802 |
| PspN4I | GGNNCC | 2 cut(s) | 808, 1146 |
| PspPI | GGNCC | 2 cut(s) | 806, 817 |
| PspPPI | RGGWCCY | 1 cut(s) | 817 |
| PstNI | CAGNNNCTG | 3 cut(s) | 803, 992, 1057 |
| PsuI | RGATCY | 2 cut(s) | 1035, 1153 |
| PsyI | GACNNNGTC | 1 cut(s) | 1057 |
| RsaI | GTAC | 3 cut(s) | 162, 200, 990 |
| RsaNI | GTAC | 3 cut(s) | 161, 199, 989 |
| RseI | CAYNNNNRTG | 2 cut(s) | 459, 714 |
| SacI | GAGCTC | 1 cut(s) | 1074 |
| SapI | GCTCTTC | 1 cut(s) | 489 |
| SaqAI | TTAA | 2 cut(s) | 156, 963 |
| SatI | GCNGC | 9 cut(s) | 109, 112, 300, 416, 500, 572, 630, 696, 699 |
| Sau3AI | GATC | 6 cut(s) | 94, 443, 597, 1035, 1153, 1234 |
| Sau96I | GGNCC | 2 cut(s) | 806, 817 |
| ScaI | AGTACT | 1 cut(s) | 200 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 2 cut(s) | 762, 804 |
| SduI | GDGCHC | 2 cut(s) | 437, 1074 |
| SfaNI | GCATC | 2 cut(s) | 474, 1240 |
| SinI | GGWCC | 2 cut(s) | 806, 817 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 459, 714 |
| SsiI | CCGC | 7 cut(s) | 111, 415, 500, 571, 629, 872, 1040 |
| SspI | AATATT | 2 cut(s) | 310, 662 |
| SspMI | CTAG | 5 cut(s) | 38, 165, 641, 839, 947 |
| SstI | GAGCTC | 1 cut(s) | 1074 |
| StyD4I | CCNGG | 2 cut(s) | 760, 802 |
| StyI | CCWWGG | 1 cut(s) | 1075 |
| TaaI | ACNGT | 2 cut(s) | 398, 988 |
| TaiI | ACGT | 3 cut(s) | 162, 897, 1015 |
| TaqI | TCGA | 4 cut(s) | 93, 600, 747, 792 |
| TaqII | GACCGA | 1 cut(s) | 436 |
| TatI | WGTACW | 1 cut(s) | 198 |
| TauI | GCSGC | 5 cut(s) | 114, 418, 502, 574, 632 |
| TfiI | GAWTC | 9 cut(s) | 76, 226, 250, 537, 560, 794, 1022, 1045, 1097 |
| Tru1I | TTAA | 2 cut(s) | 156, 963 |
| Tru9I | TTAA | 2 cut(s) | 156, 963 |
| TscAI | CASTG | 4 cut(s) | 547, 732, 907, 1146 |
| TseFI | GTSAC | 2 cut(s) | 461, 727 |
| TseI | GCWGC | 4 cut(s) | 108, 299, 695, 698 |
| Tsp45I | GTSAC | 2 cut(s) | 461, 727 |
| TspDTI | ATGAA | 6 cut(s) | 17, 197, 229, 843, 1089, 1215 |
| TspRI | CASTG | 4 cut(s) | 547, 732, 907, 1146 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1057 |
| VpaK11BI | GGWCC | 2 cut(s) | 806, 817 |
| XapI | RAATTY | 2 cut(s) | 689, 734 |
| XmnI | GAANNNNTTC | 2 cut(s) | 75, 188 |
| XspI | CTAG | 5 cut(s) | 38, 165, 641, 839, 947 |
| ZrmI | AGTACT | 1 cut(s) | 200 |
| Zsp2I | ATGCAT | 2 cut(s) | 30, 1255 |