AT4G31770

Lariat debranching enzyme, C-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
15370061 .. 15372942
2882 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31770.2

Sequence Viewer

Length: 1257 bp
ATGAAGATTGCAATTGAAGGTTGTATGCATGGAGACCTAGACAATGTGTATAAAACAATTCAACATTACGAACAGATTCACAACACTAAAGTCGATCTCCTCCTCTGCTGCGGCGATTTTCAGGCTGTTAGAAATGAGAAAGACATGGATAGCCTTAACGTACCTAGAAAATACAGAGAGATGAAATCTTTCTGGAAGTACTACTCCGGCCAAGAAGTTGCTCCGATTCCCACAATTTTCATTGGTGGGAATCATGAGGCTTCTAACTACTTATGGGAATTGTATTATGGGGGTTGGGCTGCCACCAATATTTACTTTTTGGGTTTTGCTGGAGTTGTCAAGTTTGGTAATGTGCGAATTGGTGGCCTTTCTGGTATATACAATGAGCGTCATTACCGTTCAGGACACTTTGAGCGGCCACCATATAACGAGAGCACCATCAGATCGGTCTATCATGTTCGTGACTATGATGTCCAGAAGTTGATGCAACTTGAAGAGCCGCTTGATATATTTCTATCACATGATTGGCCTGTTGGAATCACTGATTATGGAGACTCAGAATCACTTATGCGGCAAAAACCATACTTTCGTCAAGAGATCGAGGAAAAAACTCTTGGAAGTAAACCAGCGGCTCTACTGCTAGAAAAACTGAAGCCTCAATATTGGTTTTCAGCTCATTTACATTGCAAATTTGCTGCTGCTGTTCAACACGGGAATGATGGGTCAGTGACAAAATTTCTTGCCCTCGATAAATGCCTTCCAGGGAAAAAGTTTTTACAGATTATTGAAATCGAATCAGAGCCTGGACCCTTTGAGGTCCTATACGATGAAGAGTGGCTAGCAATCACACGAAAGTTCAATTCTATTTTCCCGCTAACAAGGAGATACACAAACGTCAGCACTGCTGGAACTATACAAGAGAGCCGTGAGTGGGTGAGGAAGAAGCTAGAAGAAAGGCAATTTAAACCTTTTGAGTTTGCGAGAACAGTACCTGCATATAACCCATCACAACGTGTATTTGATTCCATTCCTGAGATCCCGCAGAATCCCCAGACGCTGTCTTTGTTAGAGCTCCTTGGTCTCCCATATCTCCTTGATTCATCACCAGTAACAGGGGAAAGAACCGATATCCCTGCTTCACTGGCTCCATCAGATCTTCCGACATATGATAGCGAAGAAATCCCAATTGATGACATTGATGAAATAGAAGAGATGGAGGAAGCAAAAGCAGATGATCATACAAGAGACGATGCATGA

Protein Analysis

418

Amino Acids

48.17

Weight (kDa)

5.09

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 1 - 229 5.5e-14 Calcineurin-like phosphoesterase
DBR1 PF05011 242 - 362 3.7e-29 Lariat debranching enzyme, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
Acc36I ACCTGC 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 415
AciI CCGC 7 cut(s) 111, 415, 500, 571, 629, 872, 1040
AclWI GGATC 1 cut(s) 1030
AcoI YGGCCR 2 cut(s) 208, 416
AcsI RAATTY 2 cut(s) 689, 734
AcuI CTGAAG 1 cut(s) 671
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 3 cut(s) 162, 200, 990
AfiI CCNNNNNNNGG 2 cut(s) 931, 1112
AflIII ACRYGT 1 cut(s) 1012
AgsI TTSAA 6 cut(s) 17, 62, 494, 707, 788, 859
AjnI CCWGG 2 cut(s) 760, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AluBI AGCT 3 cut(s) 674, 946, 1072
AluI AGCT 3 cut(s) 674, 946, 1072
Alw21I GWGCWC 2 cut(s) 437, 1074
Alw26I GTCTC 4 cut(s) 27, 546, 1085, 1239
AlwI GGATC 1 cut(s) 1030
AlwNI CAGNNNCTG 3 cut(s) 803, 992, 1057
AoxI GGCC 4 cut(s) 208, 364, 416, 527
ApeKI GCWGC 4 cut(s) 108, 299, 695, 698
ApoI RAATTY 2 cut(s) 689, 734
ArsI GACNNNNNNTTYG 2 cut(s) 1045, 1077
Asp700I GAANNNNTTC 2 cut(s) 75, 188
AspS9I GGNCC 2 cut(s) 806, 817
AsuHPI GGTGA 2 cut(s) 946, 1095
AsuNHI GCTAGC 1 cut(s) 838
AvaII GGWCC 2 cut(s) 806, 817
BanII GRGCYC 1 cut(s) 1074
Bbv12I GWGCWC 2 cut(s) 437, 1074
BbvI GCAGC 4 cut(s) 95, 286, 682, 685
BccI CCATC 5 cut(s) 446, 713, 1012, 1156, 1207
BceAI ACGGC 1 cut(s) 909
BcgI CGANNNNNNTGC 2 cut(s) 1115, 1149
BciT130I CCWGG 2 cut(s) 762, 804
BclI TGATCA 1 cut(s) 1234
BcoDI GTCTC 4 cut(s) 27, 546, 1085, 1239
BfaI CTAG 5 cut(s) 38, 165, 641, 839, 947
BfuAI ACCTGC 1 cut(s) 1000
BglII AGATCT 1 cut(s) 1153
BisI GCNGC 9 cut(s) 109, 112, 300, 416, 500, 572, 630, 696, 699
BlsI GCNGC 9 cut(s) 110, 113, 301, 417, 501, 573, 631, 697, 700
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 2 cut(s) 762, 804
Bme18I GGWCC 2 cut(s) 806, 817
BmgT120I GGNCC 2 cut(s) 806, 817
BmiI GGNNCC 2 cut(s) 808, 1146
BmrFI CCNGG 2 cut(s) 762, 804
BmsI GCATC 2 cut(s) 474, 1240
BmtI GCTAGC 1 cut(s) 842
BpmI CTGGAG 1 cut(s) 351
BsaI GGTCTC 2 cut(s) 27, 1085
BsaJI CCNNGG 2 cut(s) 761, 1075
Bsc4I CCNNNNNNNGG 2 cut(s) 931, 1112
Bse1I ACTGG 2 cut(s) 1106, 1146
Bse3DI GCAATG 1 cut(s) 682
BseBI CCWGG 2 cut(s) 762, 804
BseDI CCNNGG 2 cut(s) 761, 1075
BseLI CCNNNNNNNGG 2 cut(s) 931, 1112
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 2 cut(s) 570, 1023
BseNI ACTGG 2 cut(s) 1106, 1146
BseRI GAGGAG 2 cut(s) 89, 92
BseXI GCAGC 4 cut(s) 95, 286, 682, 685
BshFI GGCC 4 cut(s) 210, 366, 418, 529
BsiHKAI GWGCWC 2 cut(s) 437, 1074
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 931, 1112
BsmAI GTCTC 4 cut(s) 27, 546, 1085, 1239
BsmBI CGTCTC 1 cut(s) 1239
BsnI GGCC 4 cut(s) 210, 366, 418, 529
Bso31I GGTCTC 2 cut(s) 27, 1085
Bsp1286I GDGCHC 2 cut(s) 437, 1074
Bsp143I GATC 6 cut(s) 94, 443, 597, 1035, 1153, 1234
BspACI CCGC 7 cut(s) 111, 415, 500, 571, 629, 872, 1040
BspANI GGCC 4 cut(s) 210, 366, 418, 529
BspCNI CTCAG 2 cut(s) 569, 1024
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 808, 1146
BspMI ACCTGC 1 cut(s) 1000
BspOI GCTAGC 1 cut(s) 842
BspPI GGATC 1 cut(s) 1030
BspQI GCTCTTC 1 cut(s) 489
BspTNI GGTCTC 2 cut(s) 27, 1085
BsrBI CCGCTC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 682
BsrI ACTGG 2 cut(s) 1106, 1146
BssECI CCNNGG 2 cut(s) 761, 1075
BssMI GATC 6 cut(s) 94, 443, 597, 1035, 1153, 1234
BssT1I CCWWGG 1 cut(s) 1075
Bst2UI CCWGG 2 cut(s) 762, 804
Bst4CI ACNGT 2 cut(s) 398, 988
Bst6I CTCTTC 3 cut(s) 489, 825, 1203
BstC8I GCNNGC 1 cut(s) 840
BstDEI CTNAG 2 cut(s) 556, 1032
BstKTI GATC 6 cut(s) 97, 446, 600, 1038, 1156, 1237
BstMAI GTCTC 4 cut(s) 27, 546, 1085, 1239
BstMBI GATC 6 cut(s) 94, 443, 597, 1035, 1153, 1234
BstMWI GCNNNNNNNGC 1 cut(s) 1142
BstNI CCWGG 2 cut(s) 762, 804
BstSCI CCNGG 2 cut(s) 760, 802
BstV1I GCAGC 4 cut(s) 95, 286, 682, 685
BstX2I RGATCY 2 cut(s) 1035, 1153
BstYI RGATCY 2 cut(s) 1035, 1153
BsuRI GGCC 4 cut(s) 210, 366, 418, 529
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 4 cut(s) 540, 732, 900, 1139
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 1 cut(s) 840
CaiI CAGNNNCTG 3 cut(s) 803, 992, 1057
CciI TCATGA 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 806, 817
CseI GACGC 2 cut(s) 377, 1063
Csp6I GTAC 3 cut(s) 161, 199, 989
CviAII CATG 6 cut(s) 29, 145, 254, 455, 521, 1254
CviQI GTAC 3 cut(s) 161, 199, 989
DdeI CTNAG 2 cut(s) 556, 1032
DpnI GATC 6 cut(s) 96, 445, 599, 1037, 1155, 1236
DpnII GATC 6 cut(s) 94, 443, 597, 1035, 1153, 1234
DraI TTTAAA 1 cut(s) 964
DraIII CACNNNGTG 1 cut(s) 1013
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
EaeI YGGCCR 2 cut(s) 208, 416
Eam1104I CTCTTC 3 cut(s) 489, 825, 1203
EarI CTCTTC 3 cut(s) 489, 825, 1203
Ecl136II GAGCTC 1 cut(s) 1072
Eco130I CCWWGG 1 cut(s) 1075
Eco24I GRGCYC 1 cut(s) 1074
Eco31I GGTCTC 2 cut(s) 27, 1085
Eco32I GATATC 1 cut(s) 1129
Eco47I GGWCC 2 cut(s) 806, 817
Eco53kI GAGCTC 1 cut(s) 1072
Eco57I CTGAAG 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 1072
EcoO109I RGGNCCY 1 cut(s) 817
EcoRII CCWGG 2 cut(s) 760, 802
EcoRV GATATC 1 cut(s) 1129
EcoT14I CCWWGG 1 cut(s) 1075
EcoT22I ATGCAT 2 cut(s) 30, 1255
EcoT38I GRGCYC 1 cut(s) 1074
ErhI CCWWGG 1 cut(s) 1075
Esp3I CGTCTC 1 cut(s) 1239
FaeI CATG 6 cut(s) 32, 148, 257, 458, 524, 1257
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FatI CATG 6 cut(s) 28, 144, 253, 454, 520, 1253
FauI CCCGC 2 cut(s) 879, 1047
FauNDI CATATG 1 cut(s) 1165
FbaI TGATCA 1 cut(s) 1234
Fnu4HI GCNGC 9 cut(s) 109, 112, 300, 416, 500, 572, 630, 696, 699
FriOI GRGCYC 1 cut(s) 1074
Fsp4HI GCNGC 9 cut(s) 109, 112, 300, 416, 500, 572, 630, 696, 699
FspBI CTAG 5 cut(s) 38, 165, 641, 839, 947
GluI GCNGC 9 cut(s) 109, 112, 300, 416, 500, 572, 630, 696, 699
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 4 cut(s) 210, 366, 418, 529
HapII CCGG 1 cut(s) 207
HgaI GACGC 2 cut(s) 377, 1063
Hin1II CATG 6 cut(s) 32, 148, 257, 458, 524, 1257
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 946, 1095
Hpy166II GTNNAC 1 cut(s) 623
Hpy188I TCNGA 6 cut(s) 225, 443, 559, 799, 1153, 1161
Hpy188III TCNNGA 7 cut(s) 193, 254, 402, 461, 475, 593, 1031
Hpy8I GTNNAC 1 cut(s) 623
HpyAV CCTTC 2 cut(s) 11, 767
HpyCH4III ACNGT 2 cut(s) 398, 988
HpyCH4IV ACGT 3 cut(s) 159, 894, 1012
HpyCH4V TGCA 6 cut(s) 11, 28, 487, 687, 995, 1253
HpyF10VI GCNNNNNNNGC 1 cut(s) 1142
HpyF3I CTNAG 2 cut(s) 556, 1032
HpySE526I ACGT 3 cut(s) 159, 894, 1012
Hsp92II CATG 6 cut(s) 32, 148, 257, 458, 524, 1257
Ksp22I TGATCA 1 cut(s) 1234
Kzo9I GATC 6 cut(s) 94, 443, 597, 1035, 1153, 1234
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 3 cut(s) 226, 1077, 1150
Lsp1109I GCAGC 4 cut(s) 95, 286, 682, 685
LweI GCATC 2 cut(s) 474, 1240
MaeI CTAG 5 cut(s) 38, 165, 641, 839, 947
MaeII ACGT 3 cut(s) 159, 894, 1012
MaeIII GTNAC 3 cut(s) 461, 727, 1108
MalI GATC 6 cut(s) 96, 445, 599, 1037, 1155, 1236
MbiI CCGCTC 1 cut(s) 415
MboI GATC 6 cut(s) 94, 443, 597, 1035, 1153, 1234
MboII GAAGA 8 cut(s) 16, 506, 842, 952, 962, 1148, 1187, 1220
MfeI CAATTG 2 cut(s) 12, 1185
MflI RGATCY 2 cut(s) 1035, 1153
MhlI GDGCHC 2 cut(s) 437, 1074
MlyI GAGTC 1 cut(s) 548
MmeI TCCRAC 2 cut(s) 514, 1184
MnlI CCTC 9 cut(s) 110, 113, 250, 595, 666, 755, 808, 930, 1210
Mph1103I ATGCAT 2 cut(s) 30, 1255
MroXI GAANNNNTTC 2 cut(s) 75, 188
MseI TTAA 2 cut(s) 156, 963
MslI CAYNNNNRTG 2 cut(s) 459, 714
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 762, 804
MunI CAATTG 2 cut(s) 12, 1185
MvaI CCWGG 2 cut(s) 762, 804
MwoI GCNNNNNNNGC 1 cut(s) 1142
NdeI CATATG 1 cut(s) 1165
NdeII GATC 6 cut(s) 94, 443, 597, 1035, 1153, 1234
NheI GCTAGC 1 cut(s) 838
NlaIII CATG 6 cut(s) 32, 148, 257, 458, 524, 1257
NlaIV GGNNCC 2 cut(s) 808, 1146
NmuCI GTSAC 2 cut(s) 461, 727
NsiI ATGCAT 2 cut(s) 30, 1255
PagI TCATGA 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 489
PdmI GAANNNNTTC 2 cut(s) 75, 188
PfeI GAWTC 9 cut(s) 76, 226, 250, 537, 560, 794, 1022, 1045, 1097
PflFI GACNNNGTC 1 cut(s) 1057
PkrI GCNGC 9 cut(s) 110, 113, 301, 417, 501, 573, 631, 697, 700
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 817
Psp124BI GAGCTC 1 cut(s) 1074
Psp5II RGGWCCY 1 cut(s) 817
Psp6I CCWGG 2 cut(s) 760, 802
PspGI CCWGG 2 cut(s) 760, 802
PspN4I GGNNCC 2 cut(s) 808, 1146
PspPI GGNCC 2 cut(s) 806, 817
PspPPI RGGWCCY 1 cut(s) 817
PstNI CAGNNNCTG 3 cut(s) 803, 992, 1057
PsuI RGATCY 2 cut(s) 1035, 1153
PsyI GACNNNGTC 1 cut(s) 1057
RsaI GTAC 3 cut(s) 162, 200, 990
RsaNI GTAC 3 cut(s) 161, 199, 989
RseI CAYNNNNRTG 2 cut(s) 459, 714
SacI GAGCTC 1 cut(s) 1074
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 156, 963
SatI GCNGC 9 cut(s) 109, 112, 300, 416, 500, 572, 630, 696, 699
Sau3AI GATC 6 cut(s) 94, 443, 597, 1035, 1153, 1234
Sau96I GGNCC 2 cut(s) 806, 817
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 2 cut(s) 762, 804
SduI GDGCHC 2 cut(s) 437, 1074
SfaNI GCATC 2 cut(s) 474, 1240
SinI GGWCC 2 cut(s) 806, 817
SmiMI CAYNNNNRTG 2 cut(s) 459, 714
SsiI CCGC 7 cut(s) 111, 415, 500, 571, 629, 872, 1040
SspI AATATT 2 cut(s) 310, 662
SspMI CTAG 5 cut(s) 38, 165, 641, 839, 947
SstI GAGCTC 1 cut(s) 1074
StyD4I CCNGG 2 cut(s) 760, 802
StyI CCWWGG 1 cut(s) 1075
TaaI ACNGT 2 cut(s) 398, 988
TaiI ACGT 3 cut(s) 162, 897, 1015
TaqI TCGA 4 cut(s) 93, 600, 747, 792
TaqII GACCGA 1 cut(s) 436
TatI WGTACW 1 cut(s) 198
TauI GCSGC 5 cut(s) 114, 418, 502, 574, 632
TfiI GAWTC 9 cut(s) 76, 226, 250, 537, 560, 794, 1022, 1045, 1097
Tru1I TTAA 2 cut(s) 156, 963
Tru9I TTAA 2 cut(s) 156, 963
TscAI CASTG 4 cut(s) 547, 732, 907, 1146
TseFI GTSAC 2 cut(s) 461, 727
TseI GCWGC 4 cut(s) 108, 299, 695, 698
Tsp45I GTSAC 2 cut(s) 461, 727
TspDTI ATGAA 6 cut(s) 17, 197, 229, 843, 1089, 1215
TspRI CASTG 4 cut(s) 547, 732, 907, 1146
Tth111I GACNNNGTC 1 cut(s) 1057
VpaK11BI GGWCC 2 cut(s) 806, 817
XapI RAATTY 2 cut(s) 689, 734
XmnI GAANNNNTTC 2 cut(s) 75, 188
XspI CTAG 5 cut(s) 38, 165, 641, 839, 947
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 2 cut(s) 30, 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.