Rw0G013580

Lariat debranching

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00611
Physical Location & Seq
Forward (+)
36131 .. 37521
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013580.1

Sequence Viewer

Length: 1224 bp
ATGAAAATTGCAGTTGAAGGTTGCATGCATGGTGACCTCGACAATGTCTACAGGACCCTCCAACATATTGAAAGAATTCACAACACCAAAATCGACCTCCTCCTCTGCTGCGGTGACTTTCAGGCCGTCAGGAATGAACACGATTTGAAGAGCTTAAAGGTGTCTCCAAAACACCGGAACATGAACTCCTTTTGGAAGTACTATTCCGGCGAGGCCATCGCTCCCTATCCCACCATATTCATCGGCGGCAACCACGAAGCTTCTAACTATCTCTGGGAACTCTACTACGGAGGTTGGGCCGCACCAAATATATACTTCTTAGGGTTTGCTGGGGTCGTCAAGTTCGGACACCTTCGCATTGGTGGCCTCTCTGGTATTTATAAATCGCGAGATCATTATAGTTCAGGACACTATGAGAGGCCTCCTTATAATGAACATACCATCAAGTCTGTATATCATGTTCGCGAGTATGACGTACACAAACTCATGCAGGTTGAGGAACCGATCGATATTTTTCTTTCACATGATTGGCCTGTAAACATCACTGATCATGGAGACTTGAAGAAACTCCTTCAAAAGAAACCATTTTTTACGAAGGAGGTTCGGGAGAAAAAGCTGGGAACTCATCTGCACTGCAAATTTGCAGCTCGTGTTCAACACGGTGGGGAAGGTGGTCCGGTGACGAATTTTCTTGCTCTTGATAAGTGTGGTGAACATAGGGACTTTCTGCAGGTTATTGATGTTGAATCAGGGCCAGGGCCTTATGAGATTCAATATGATGAGGAATGGCTCGAAATAACTAGACGGTTTAACCCTGCTTTCCCTCTCACCATCGCAAGTGCGAATTTCAGTAATGTGTATCTTGACAAGGAAGCTTGTCGAAACTGGGTGAGGAGTAAGCTACAAGCAAGAGGAGCCAGACCTTTTGAATTCTGCCAGACAGCTCCATCCCATAATCCCTCTAAGAAATCTGATGACTCAAGTGGTGCCTTTCCTGTATGTCCTAGGAATCCTCAAACAGAATCTTTGTTGCAGTTTCTGGAACTTCCTTACCTTCTTGATAACATGTCAGAATCTTCGGATGCAACAAGAAATTCTTTTCCATCTAGCCATGGTTATAATAACCCCAAAGAAATTTTCATTGATGATGCGGATGACAGTAGTTACAATAACCCCGAAGAGATTTTTATTGATGATGTGGATGACTCAGATCCAGAAGAATGA

Protein Analysis

407

Amino Acids

46.63

Weight (kDa)

5.66

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 1 - 176 7.9e-11 Calcineurin-like phosphoesterase
DBR1 PF05011 227 - 350 1e-25 Lariat debranching enzyme, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 381, 429, 1119
Acc36I ACCTGC 2 cut(s) 481, 721
AccB1I GGYRCC 1 cut(s) 986
AccI GTMKAC 1 cut(s) 48
AccII CGCG 2 cut(s) 388, 465
AciI CCGC 4 cut(s) 111, 246, 300, 1151
AclWI GGATC 1 cut(s) 1205
AcsI RAATTY 7 cut(s) 75, 638, 685, 844, 929, 1093, 1134
AfaI GTAC 2 cut(s) 200, 477
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 9 cut(s) 17, 71, 148, 562, 575, 656, 746, 773, 929
AjnI CCWGG 1 cut(s) 754
AjuI GAANNNNNNNTTGG 2 cut(s) 1121, 1153
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 7 cut(s) 153, 260, 616, 647, 875, 901, 944
AluI AGCT 7 cut(s) 153, 260, 616, 647, 875, 901, 944
Alw26I GTCTC 2 cut(s) 168, 549
AlwI GGATC 1 cut(s) 1205
AlwNI CAGNNNCTG 1 cut(s) 1039
AoxI GGCC 8 cut(s) 123, 213, 297, 364, 419, 530, 752, 758
ApeKI GCWGC 2 cut(s) 108, 644
ApoI RAATTY 7 cut(s) 75, 638, 685, 844, 929, 1093, 1134
Asp700I GAANNNNTTC 1 cut(s) 75
AspA2I CCTAGG 1 cut(s) 1004
AspS9I GGNCC 5 cut(s) 54, 297, 674, 752, 758
AsuHPI GGTGA 6 cut(s) 44, 125, 691, 722, 820, 901
AvaII GGWCC 2 cut(s) 54, 674
AvrII CCTAGG 1 cut(s) 1004
BanI GGYRCC 1 cut(s) 986
BauI CACGAG 1 cut(s) 648
BbvI GCAGC 2 cut(s) 95, 656
BccI CCATC 5 cut(s) 224, 449, 839, 955, 1111
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 756
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 168, 549
BfaI CTAG 3 cut(s) 801, 1005, 1107
BfmI CTRYAG 2 cut(s) 49, 728
BfuAI ACCTGC 2 cut(s) 481, 721
BisI GCNGC 4 cut(s) 109, 247, 300, 645
BlnI CCTAGG 1 cut(s) 1004
BlsI GCNGC 4 cut(s) 110, 248, 301, 646
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 2 cut(s) 54, 674
BmgT120I GGNCC 5 cut(s) 54, 297, 674, 752, 758
BmiI GGNNCC 4 cut(s) 56, 501, 916, 988
BmrFI CCNGG 1 cut(s) 756
BmrI ACTGGG 1 cut(s) 895
BmsI GCATC 2 cut(s) 1072, 1138
BmuI ACTGGG 1 cut(s) 895
BpuEI CTTGAG 1 cut(s) 964
Bsa29I ATCGAT 1 cut(s) 507
BsaJI CCNNGG 3 cut(s) 755, 1004, 1111
BsaWI WCCGGW 2 cut(s) 174, 676
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse1I ACTGG 1 cut(s) 890
BseBI CCWGG 1 cut(s) 756
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 3 cut(s) 755, 1004, 1111
BseGI GGATG 4 cut(s) 947, 1087, 1159, 1207
BseMII CTCAG 1 cut(s) 1221
BseNI ACTGG 1 cut(s) 890
BseRI GAGGAG 4 cut(s) 89, 92, 907, 927
BseXI GCAGC 2 cut(s) 95, 656
BseYI CCCAGC 2 cut(s) 329, 616
BsgI GTGCAG 1 cut(s) 614
Bsh1236I CGCG 2 cut(s) 388, 465
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 754, 760
BshNI GGYRCC 1 cut(s) 986
BshVI ATCGAT 1 cut(s) 507
BsiEI CGRYCG 1 cut(s) 507
BsiSI CCGG 3 cut(s) 175, 207, 677
BslFI GGGAC 1 cut(s) 734
BsmAI GTCTC 2 cut(s) 168, 549
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 754, 760
Bsp143I GATC 4 cut(s) 391, 504, 547, 1210
Bsp19I CCATGG 1 cut(s) 1111
Bsp68I TCGCGA 2 cut(s) 388, 465
BspACI CCGC 4 cut(s) 111, 246, 300, 1151
BspANI GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 754, 760
BspCNI CTCAG 1 cut(s) 1220
BspDI ATCGAT 1 cut(s) 507
BspFNI CGCG 2 cut(s) 388, 465
BspLI GGNNCC 4 cut(s) 56, 501, 916, 988
BspMAI CTGCAG 1 cut(s) 732
BspMI ACCTGC 2 cut(s) 481, 721
BspPI GGATC 1 cut(s) 1205
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 986
BsrI ACTGG 1 cut(s) 890
BssECI CCNNGG 3 cut(s) 755, 1004, 1111
BssMI GATC 4 cut(s) 391, 504, 547, 1210
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 2 cut(s) 1004, 1111
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 3 cut(s) 662, 807, 1160
Bst6I CTCTTC 2 cut(s) 143, 1173
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 319, 963, 1207
BstDSI CCRYGG 1 cut(s) 1111
BstEII GGTNACC 1 cut(s) 32
BstF5I GGATG 4 cut(s) 947, 1087, 1159, 1207
BstFNI CGCG 2 cut(s) 388, 465
BstKTI GATC 4 cut(s) 394, 507, 550, 1213
BstMAI GTCTC 2 cut(s) 168, 549
BstMBI GATC 4 cut(s) 391, 504, 547, 1210
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 2 cut(s) 363, 914
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 2 cut(s) 28, 1069
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 2 cut(s) 49, 728
BstUI CGCG 2 cut(s) 388, 465
BstV1I GCAGC 2 cut(s) 95, 656
BstX2I RGATCY 1 cut(s) 1210
BstYI RGATCY 1 cut(s) 1210
Bsu15I ATCGAT 1 cut(s) 507
BsuRI GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 754, 760
BsuTUI ATCGAT 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 1111
BtgZI GCGATG 2 cut(s) 202, 817
BtsCI GGATG 4 cut(s) 947, 1087, 1159, 1207
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 2 cut(s) 543, 631
BtuMI TCGCGA 2 cut(s) 388, 465
BveI ACCTGC 2 cut(s) 481, 721
Cac8I GCNNGC 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 1039
Cfr13I GGNCC 5 cut(s) 54, 297, 674, 752, 758
ClaI ATCGAT 1 cut(s) 507
Csp6I GTAC 2 cut(s) 199, 476
CviAII CATG 9 cut(s) 25, 29, 181, 458, 487, 524, 551, 1066, 1112
CviQI GTAC 2 cut(s) 199, 476
DdeI CTNAG 3 cut(s) 319, 963, 1207
DpnI GATC 4 cut(s) 393, 506, 549, 1212
DpnII GATC 4 cut(s) 391, 504, 547, 1210
Eam1104I CTCTTC 2 cut(s) 143, 1173
EarI CTCTTC 2 cut(s) 143, 1173
Eco130I CCWWGG 2 cut(s) 1004, 1111
Eco147I AGGCCT 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 54, 674
Eco91I GGTNACC 1 cut(s) 32
EcoO109I RGGNCCY 2 cut(s) 54, 758
EcoO65I GGTNACC 1 cut(s) 32
EcoRI GAATTC 2 cut(s) 75, 929
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 2 cut(s) 1004, 1111
EcoT22I ATGCAT 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 1004, 1111
FaeI CATG 9 cut(s) 28, 32, 184, 461, 490, 527, 554, 1069, 1115
FalI AAGNNNNNCTT 2 cut(s) 1081, 1113
FaqI GGGAC 1 cut(s) 734
FatI CATG 9 cut(s) 24, 28, 180, 457, 486, 523, 550, 1065, 1111
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 109, 247, 300, 645
FokI GGATG 4 cut(s) 934, 1094, 1166, 1214
Fsp4HI GCNGC 4 cut(s) 109, 247, 300, 645
FspBI CTAG 3 cut(s) 801, 1005, 1107
GluI GCNGC 4 cut(s) 109, 247, 300, 645
GsaI CCCAGC 2 cut(s) 333, 620
HaeIII GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 754, 760
HapII CCGG 3 cut(s) 175, 207, 677
Hin1II CATG 9 cut(s) 28, 32, 184, 461, 490, 527, 554, 1069, 1115
HindIII AAGCTT 2 cut(s) 258, 873
HinfI GANTC 7 cut(s) 746, 769, 977, 1009, 1022, 1073, 1205
HpaII CCGG 3 cut(s) 175, 207, 677
HphI GGTGA 6 cut(s) 44, 125, 691, 722, 820, 901
Hpy166II GTNNAC 4 cut(s) 49, 478, 538, 713
Hpy188I TCNGA 5 cut(s) 347, 973, 1072, 1081, 1210
Hpy8I GTNNAC 4 cut(s) 49, 478, 538, 713
HpyAV CCTTC 6 cut(s) 11, 362, 581, 589, 662, 1064
HpyCH4III ACNGT 3 cut(s) 662, 807, 1160
HpyCH4IV ACGT 1 cut(s) 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 914
HpyF3I CTNAG 3 cut(s) 319, 963, 1207
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 9 cut(s) 28, 32, 184, 461, 490, 527, 554, 1069, 1115
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 4 cut(s) 391, 504, 547, 1210
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 3 cut(s) 226, 914, 949
Lsp1109I GCAGC 2 cut(s) 95, 656
LweI GCATC 2 cut(s) 1072, 1138
MaeI CTAG 3 cut(s) 801, 1005, 1107
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 4 cut(s) 32, 113, 679, 1163
MalI GATC 4 cut(s) 393, 506, 549, 1212
MboI GATC 4 cut(s) 391, 504, 547, 1210
MboII GAAGA 4 cut(s) 160, 574, 1068, 1190
MflI RGATCY 1 cut(s) 1210
MluCI AATT 8 cut(s) 6, 75, 638, 685, 844, 929, 1093, 1134
MlyI GAGTC 2 cut(s) 971, 1199
MmeI TCCRAC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 30
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 2 cut(s) 155, 810
MspI CCGG 3 cut(s) 175, 207, 677
MspR9I CCNGG 1 cut(s) 756
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 2 cut(s) 388, 465
MwoI GCNNNNNNNGC 2 cut(s) 363, 914
NcoI CCATGG 1 cut(s) 1111
NdeII GATC 4 cut(s) 391, 504, 547, 1210
NlaIII CATG 9 cut(s) 28, 32, 184, 461, 490, 527, 554, 1069, 1115
NlaIV GGNNCC 4 cut(s) 56, 501, 916, 988
NmuCI GTSAC 3 cut(s) 32, 113, 679
NruI TCGCGA 2 cut(s) 388, 465
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 2 cut(s) 28, 1069
PaeI GCATGC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 421
PciI ACATGT 1 cut(s) 1065
PciSI GCTCTTC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 5 cut(s) 746, 769, 1009, 1022, 1073
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 4 cut(s) 110, 248, 301, 646
Ple19I CGATCG 1 cut(s) 507
PleI GAGTC 2 cut(s) 971, 1199
PpsI GAGTC 2 cut(s) 971, 1199
PpuMI RGGWCCY 1 cut(s) 54
PscI ACATGT 1 cut(s) 1065
PsiI TTATAA 3 cut(s) 381, 429, 1119
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 754
PspEI GGTNACC 1 cut(s) 32
PspFI CCCAGC 2 cut(s) 329, 616
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 4 cut(s) 56, 501, 916, 988
PspPI GGNCC 5 cut(s) 54, 297, 674, 752, 758
PspPPI RGGWCCY 1 cut(s) 54
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
PstI CTGCAG 1 cut(s) 732
PstNI CAGNNNCTG 1 cut(s) 1039
PsuI RGATCY 1 cut(s) 1210
PsyI GACNNNGTC 1 cut(s) 44
PvuI CGATCG 1 cut(s) 507
RruI TCGCGA 2 cut(s) 388, 465
RsaI GTAC 2 cut(s) 200, 477
RsaNI GTAC 2 cut(s) 199, 476
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 155, 810
SatI GCNGC 4 cut(s) 109, 247, 300, 645
Sau3AI GATC 4 cut(s) 391, 504, 547, 1210
Sau96I GGNCC 5 cut(s) 54, 297, 674, 752, 758
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 2 cut(s) 971, 1199
ScrFI CCNGG 1 cut(s) 756
SfaNI GCATC 2 cut(s) 1072, 1138
SfcI CTRYAG 2 cut(s) 49, 728
SinI GGWCC 2 cut(s) 54, 674
SmlI CTYRAG 1 cut(s) 979
SmoI CTYRAG 1 cut(s) 979
SphI GCATGC 1 cut(s) 28
Sse9I AATT 8 cut(s) 6, 75, 638, 685, 844, 929, 1093, 1134
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 4 cut(s) 111, 246, 300, 1151
SspMI CTAG 3 cut(s) 801, 1005, 1107
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 2 cut(s) 1004, 1111
TaaI ACNGT 3 cut(s) 662, 807, 1160
TaiI ACGT 1 cut(s) 477
TaqI TCGA 5 cut(s) 39, 93, 507, 792, 880
TasI AATT 8 cut(s) 6, 75, 638, 685, 844, 929, 1093, 1134
TatI WGTACW 1 cut(s) 198
TauI GCSGC 2 cut(s) 249, 302
TfiI GAWTC 5 cut(s) 746, 769, 1009, 1022, 1073
Tru1I TTAA 2 cut(s) 155, 810
Tru9I TTAA 2 cut(s) 155, 810
TscAI CASTG 2 cut(s) 550, 638
TseFI GTSAC 3 cut(s) 32, 113, 679
TseI GCWGC 2 cut(s) 108, 644
Tsp45I GTSAC 3 cut(s) 32, 113, 679
TspDTI ATGAA 6 cut(s) 17, 150, 197, 229, 447, 1129
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 550, 638
Tth111I GACNNNGTC 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 54, 674
XapI RAATTY 7 cut(s) 75, 638, 685, 844, 929, 1093, 1134
XceI RCATGY 2 cut(s) 28, 1069
XmaJI CCTAGG 1 cut(s) 1004
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 3 cut(s) 801, 1005, 1107
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.