FvH4_6g29560

Lariat debranching

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
22819330 .. 22820355
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29560.t1

Sequence Viewer

Length: 1026 bp
ATGAACTCCTTTTGGAAGTACTATTCCGGCGAGGCCATAGCTCCCTATCCCACCATATTCATCGGCGGCAACCATGAAGCTTCCAACTATCTCTGGGAGCTCTACTACGGAGGTTGGGCGGCGCCTAACATATACTTCTTAGGGTTTGCTGGAGTCGTCAAGTTCGGAAACCTTCGCATCGGTGGCCTCTCTGGACTTTATGGACCAAAACACTATAGATTAGGACACTATGAGAGGCCTCCTTATAATGAAGGTACCATCAAGTCTCTATATCATGTTCGTGAGTATAACGTTCACAAACTCATGCAAGTAGAAGAACCGATTGACATTTTTCTCTCACATGATTGGCCTGTAGGCATCACACTCAAGGAACTCTTTAAATTTAAAAAAGATTTTGAGCAGGATATCAAGGACAGAAGGCTGGGAAGTGAAGCTGCTGCTCAATTGCTACAGAAACTGAAACCACCCTATTGGTTTTCAGCTCATCTTCACTGCAAATTTGCAGCTCGTGTTCGGCACGGGGAAGATGGTCCGGTGACGAATTTTCTTGCTCTTAATAAGTGTTGTAGAGAAAGTAAGGGCGAATTTCTGCAGGTTATTGACGTTGAATCAGGGCCGGGGCCTTATGAGATTCAGTATGATGAGGAATGGCTCGGAATAACCAGACAGTTCAACTCAGTTTTCCCTCTCACGGTTGCAAGTGCGAATTTCAGTAATGTGTATCTCGACAAGGAAGCTTGCCAAAACTGGGTGAGGAGTAAGCTACAAGCAAGAGGAGCCAGACCTTTTGAATTCTGCCGGACAGTTCCATCCCATGATCCGGATTCCACTAACAAATTTGATAGCTCGAGGGGTGCCTTTCCTGGATGTAATAGGAATCCTCAAACAGAATCTTTGTTGCAGTTTCTGGAACTTCCTTATCTTCTTGATAACATGTCAGAATCTTTGGATGCAGCAAGGAGTTCTGTCCCATCAATCAAAGAGATTTTCATCGATGATGTGGATGAGTCTGATCCAGAAGAATGA

Protein Analysis

342

Amino Acids

39.02

Weight (kDa)

5.64

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBR1 PF05011 179 - 306 1.1e-20 Lariat debranching enzyme, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 583
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 3 cut(s) 121, 254, 854
AccIII TCCGGA 1 cut(s) 820
AciI CCGC 2 cut(s) 66, 119
AclI AACGTT 1 cut(s) 291
AclWI GGATC 2 cut(s) 812, 1007
AcsI RAATTY 7 cut(s) 380, 497, 541, 584, 706, 791, 836
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 2 cut(s) 20, 256
AfiI CCNNNNNNNGG 3 cut(s) 691, 748, 820
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 3 cut(s) 608, 673, 791
AjnI CCWGG 1 cut(s) 862
AluBI AGCT 9 cut(s) 41, 80, 100, 434, 482, 506, 737, 763, 846
AluI AGCT 9 cut(s) 41, 80, 100, 434, 482, 506, 737, 763, 846
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 812, 1007
AlwNI CAGNNNCTG 2 cut(s) 457, 907
Ama87I CYCGRG 1 cut(s) 847
Aor13HI TCCGGA 1 cut(s) 820
AoxI GGCC 6 cut(s) 33, 184, 236, 347, 614, 620
ApeKI GCWGC 4 cut(s) 434, 437, 503, 953
ApoI RAATTY 7 cut(s) 380, 497, 541, 584, 706, 791, 836
Asp718I GGTACC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 4 cut(s) 203, 530, 614, 620
AsuC2I CCSGG 1 cut(s) 618
AsuHPI GGTGA 2 cut(s) 547, 763
AvaI CYCGRG 1 cut(s) 847
AvaII GGWCC 2 cut(s) 203, 530
BanI GGYRCC 3 cut(s) 121, 254, 854
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 421, 424, 515, 965
BccI CCATC 4 cut(s) 266, 521, 817, 979
BciT130I CCWGG 1 cut(s) 864
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 270
BfmI CTRYAG 4 cut(s) 214, 351, 449, 590
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 6 cut(s) 67, 120, 435, 438, 504, 954
BlsI GCNGC 6 cut(s) 68, 121, 436, 439, 505, 955
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 618, 864
Bme18I GGWCC 2 cut(s) 203, 530
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 4 cut(s) 203, 530, 614, 620
BmiI GGNNCC 5 cut(s) 123, 256, 621, 778, 856
BmrFI CCNGG 2 cut(s) 618, 864
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 3 cut(s) 186, 366, 940
BmuI ACTGGG 1 cut(s) 757
BpmI CTGGAG 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 618
Bsa29I ATCGAT 1 cut(s) 993
BsaBI GATNNNNATC 1 cut(s) 989
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 617
BsaWI WCCGGW 2 cut(s) 532, 820
Bsc4I CCNNNNNNNGG 3 cut(s) 691, 748, 820
Bse1I ACTGG 1 cut(s) 752
Bse8I GATNNNNATC 1 cut(s) 989
BseAI TCCGGA 1 cut(s) 820
BseBI CCWGG 1 cut(s) 864
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 4 cut(s) 809, 872, 955, 1009
BseJI GATNNNNATC 1 cut(s) 989
BseLI CCNNNNNNNGG 3 cut(s) 691, 748, 820
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 1 cut(s) 752
BseRI GAGGAG 2 cut(s) 769, 789
BseXI GCAGC 4 cut(s) 421, 424, 515, 965
BseYI CCCAGC 1 cut(s) 421
BshFI GGCC 6 cut(s) 35, 186, 238, 349, 616, 622
BshNI GGYRCC 3 cut(s) 121, 254, 854
BshVI ATCGAT 1 cut(s) 993
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 5 cut(s) 27, 533, 617, 799, 821
BslFI GGGAC 1 cut(s) 953
BslI CCNNNNNNNGG 3 cut(s) 691, 748, 820
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 953
BsnI GGCC 6 cut(s) 35, 186, 238, 349, 616, 622
BsoBI CYCGRG 1 cut(s) 847
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 820
Bsp143I GATC 2 cut(s) 817, 1012
BspACI CCGC 2 cut(s) 66, 119
BspANI GGCC 6 cut(s) 35, 186, 238, 349, 616, 622
BspCNI CTCAG 1 cut(s) 689
BspDI ATCGAT 1 cut(s) 993
BspEI TCCGGA 1 cut(s) 820
BspLI GGNNCC 5 cut(s) 123, 256, 621, 778, 856
BspMAI CTGCAG 1 cut(s) 594
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 2 cut(s) 812, 1007
BspT107I GGYRCC 3 cut(s) 121, 254, 854
BsrI ACTGG 1 cut(s) 752
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 2 cut(s) 817, 1012
BssNI GRCGYC 1 cut(s) 122
BssSI CACGAG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 3 cut(s) 669, 694, 805
BstACI GRCGYC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 739
BstDEI CTNAG 2 cut(s) 139, 676
BstF5I GGATG 4 cut(s) 809, 872, 955, 1009
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 820, 1015
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 817, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 183, 776
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 2 cut(s) 616, 862
BstSFI CTRYAG 4 cut(s) 214, 351, 449, 590
BstV1I GCAGC 4 cut(s) 421, 424, 515, 965
BstXI CCANNNNNNTGG 1 cut(s) 471
Bsu15I ATCGAT 1 cut(s) 993
BsuRI GGCC 6 cut(s) 35, 186, 238, 349, 616, 622
BsuTUI ATCGAT 1 cut(s) 993
BtsCI GGATG 4 cut(s) 809, 872, 955, 1009
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 739
CaiI CAGNNNCTG 2 cut(s) 457, 907
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 4 cut(s) 203, 530, 614, 620
ClaI ATCGAT 1 cut(s) 993
Csp6I GTAC 2 cut(s) 19, 255
CviAII CATG 6 cut(s) 74, 275, 304, 341, 815, 934
CviQI GTAC 2 cut(s) 19, 255
DdeI CTNAG 2 cut(s) 139, 676
DinI GGCGCC 1 cut(s) 123
DpnI GATC 2 cut(s) 819, 1014
DpnII GATC 2 cut(s) 817, 1012
DraI TTTAAA 2 cut(s) 379, 385
Ecl136II GAGCTC 1 cut(s) 100
Eco147I AGGCCT 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 102
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 203, 530
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 847
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 791
EcoRII CCWGG 1 cut(s) 862
EcoRV GATATC 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
FaeI CATG 6 cut(s) 77, 278, 307, 344, 818, 937
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 953
FatI CATG 6 cut(s) 73, 274, 303, 340, 814, 933
Fnu4HI GCNGC 6 cut(s) 67, 120, 435, 438, 504, 954
FokI GGATG 4 cut(s) 796, 879, 962, 1016
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 6 cut(s) 67, 120, 435, 438, 504, 954
GlaI GCGC 1 cut(s) 123
GluI GCNGC 6 cut(s) 67, 120, 435, 438, 504, 954
GsaI CCCAGC 1 cut(s) 425
GsuI CTGGAG 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 6 cut(s) 35, 186, 238, 349, 616, 622
HapII CCGG 5 cut(s) 27, 533, 617, 799, 821
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 6 cut(s) 77, 278, 307, 344, 818, 937
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HindIII AAGCTT 2 cut(s) 78, 735
HinfI GANTC 8 cut(s) 153, 608, 631, 824, 877, 890, 941, 1007
HpaII CCGG 5 cut(s) 27, 533, 617, 799, 821
HphI GGTGA 2 cut(s) 547, 763
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 4 cut(s) 167, 656, 940, 1012
Hpy188III TCNNGA 7 cut(s) 192, 281, 725, 821, 908, 926, 1016
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 182, 245, 411
HpyCH4III ACNGT 3 cut(s) 669, 694, 805
HpyCH4IV ACGT 2 cut(s) 291, 603
HpyCH4V TGCA 7 cut(s) 307, 495, 503, 592, 698, 901, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 776
HpyF3I CTNAG 2 cut(s) 139, 676
HpySE526I ACGT 2 cut(s) 291, 603
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 6 cut(s) 77, 278, 307, 344, 818, 937
HspAI GCGC 1 cut(s) 122
KasI GGCGCC 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 820
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 817, 1012
LmnI GCTCC 3 cut(s) 46, 97, 776
Lsp1109I GCAGC 4 cut(s) 421, 424, 515, 965
LweI GCATC 3 cut(s) 186, 366, 940
MaeII ACGT 2 cut(s) 291, 603
MaeIII GTNAC 1 cut(s) 535
MalI GATC 2 cut(s) 819, 1014
MboI GATC 2 cut(s) 817, 1012
MboII GAAGA 4 cut(s) 326, 479, 536, 914
MfeI CAATTG 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 8 cut(s) 380, 443, 497, 541, 584, 706, 791, 836
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 2 cut(s) 162, 1016
MmeI TCCRAC 1 cut(s) 108
MroI TCCGGA 1 cut(s) 820
MseI TTAA 3 cut(s) 378, 384, 555
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 5 cut(s) 27, 533, 617, 799, 821
MspR9I CCNGG 2 cut(s) 618, 864
MunI CAATTG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 864
MwoI GCNNNNNNNGC 2 cut(s) 183, 776
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 1 cut(s) 618
NdeII GATC 2 cut(s) 817, 1012
NlaIII CATG 6 cut(s) 77, 278, 307, 344, 818, 937
NlaIV GGNNCC 5 cut(s) 123, 256, 621, 778, 856
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 1 cut(s) 937
PaeR7I CTCGAG 1 cut(s) 847
PceI AGGCCT 1 cut(s) 238
PciI ACATGT 1 cut(s) 933
PfeI GAWTC 6 cut(s) 608, 631, 824, 877, 890, 941
PfoI TCCNGGA 1 cut(s) 862
PkrI GCNGC 6 cut(s) 68, 121, 436, 439, 505, 955
PleI GAGTC 2 cut(s) 161, 1015
PluTI GGCGCC 1 cut(s) 125
PpsI GAGTC 2 cut(s) 161, 1015
PscI ACATGT 1 cut(s) 933
PsiI TTATAA 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 102
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 421
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 5 cut(s) 123, 256, 621, 778, 856
PspPI GGNCC 4 cut(s) 203, 530, 614, 620
PspXI VCTCGAGB 1 cut(s) 847
PstI CTGCAG 1 cut(s) 594
PstNI CAGNNNCTG 2 cut(s) 457, 907
RsaI GTAC 2 cut(s) 20, 256
RsaNI GTAC 2 cut(s) 19, 255
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 378, 384, 555
SatI GCNGC 6 cut(s) 67, 120, 435, 438, 504, 954
Sau3AI GATC 2 cut(s) 817, 1012
Sau96I GGNCC 4 cut(s) 203, 530, 614, 620
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 2 cut(s) 162, 1016
ScrFI CCNGG 2 cut(s) 618, 864
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 3 cut(s) 186, 366, 940
SfcI CTRYAG 4 cut(s) 214, 351, 449, 590
SfoI GGCGCC 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 847
SinI GGWCC 2 cut(s) 203, 530
SlaI CTCGAG 1 cut(s) 847
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 365, 847
SmoI CTYRAG 2 cut(s) 365, 847
Sse9I AATT 8 cut(s) 380, 443, 497, 541, 584, 706, 791, 836
SseBI AGGCCT 1 cut(s) 238
SsiI CCGC 2 cut(s) 66, 119
SspDI GGCGCC 1 cut(s) 121
SstI GAGCTC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 616, 862
TaaI ACNGT 3 cut(s) 669, 694, 805
TaiI ACGT 2 cut(s) 294, 606
TaqI TCGA 3 cut(s) 726, 848, 993
TasI AATT 8 cut(s) 380, 443, 497, 541, 584, 706, 791, 836
TatI WGTACW 1 cut(s) 18
TauI GCSGC 2 cut(s) 69, 122
TfiI GAWTC 6 cut(s) 608, 631, 824, 877, 890, 941
Tru1I TTAA 3 cut(s) 378, 384, 555
Tru9I TTAA 3 cut(s) 378, 384, 555
TscAI CASTG 1 cut(s) 497
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 4 cut(s) 434, 437, 503, 953
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 5 cut(s) 17, 49, 90, 264, 979
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 497
VpaK11BI GGWCC 2 cut(s) 203, 530
XapI RAATTY 7 cut(s) 380, 497, 541, 584, 706, 791, 836
XceI RCATGY 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 847
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.