Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Reverse (-)

63207051 .. 63211338

Gene Structure 4288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG404800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1992 bp

ATGAAAATAGCAGTGGAAGGATGTATGCACGGTGACCTGGAGAACGTGTACAGAACCCTCCAACACATAGAAAAAGTTCATAACACCAAAATCGACCTCCTCCTCTGCTGCGGCGACTTCCAGGCTGTGAGGAATGAGAAGGATTTGGAGAGCTTGAGTGTGCCCCCCAAGTACCGGTCCATGAACTCCTTCTGGAAGTACTATTCCGGCGAGGAGATCGCTCCCTATCCCACCATATTCATCGGTGGCAATCACGAAGCTTCTAATTATTTGTGGGAACTGTACTACGGAGGGTGGGCGGCACCTAATATTTACTTCTTGGGGTTTGCTGGGGTAGTCAAGTTCGGAAACCTTCGCATTGGTGGCCTCTCTGGAATTTATAAGTCGCGAGACTATCGTTCAGGACACTATGAGAGGCCTCCTTATAATGCAAATACCGTCAAGTCTGTATATCATGTTCGTGAGTATGATGTCCACAAACTCATGCAAGTTGAGGAACCAATCGATATTTTTCTTTCACATGATTGGCCTCTTGGCATCACCGATTGTGGGGACTGGAAGCAACTTGTTCGATACAAACCTCATTTTGAGACCGAAGTTCGGGAAAGAACCCTGGGAAGTAAACCTGCTGCTCAATTGCTAGAAAAATTGAAACCACCCTATTGGTTTTCAGCTCATCTACACTGCAAATTTGCTGCTCGTGTTCAGCATGGGGAAGATGGCCCCGTGACGAATTTTCTTGCTCTTGATAAGTGTCCTCCTGGAAAGAAGTTTTTGCAGGTTCTTGATATTGACTCAGGGCCAGGGCCGTACGAGATTCAGTATGATGAAGAATGGCTAGAAATAACTCGGAGGTTTAACCCTATTTTCCCTCTCACAATCAGGAGTGCAAATTTCAGGGGTGTACATATTGACAAGCAAGATTGTCGTCAATGGGTAAGGACTAAGCTACAACAAGAGGAGCCCGACCTTTTGAATTCAGCCAGACAGCTCCATCTTATAATCCCTCTAATTCTGTCTCAAATGGTTCCTCGCCTGTTTCTGGAACTCCCTTATCTTCTTGATGACATGTTAGAATCTTCGGAAGTATCCAGGAGTCCTTTTCCATCAAGCGATAGAGACGACAGCGAAGAGATTCCCATTGATGATGTGGATGAGTTAGAAGACCTTGCTGAAGAGGCTGGAGATGCTGAACATGAAGATGCTTCCTGTGCAAGTGCAGACCTCACATTGAATTTCTACTCAACTTCATGCCCTTCTGCTGAGCTTGTGGTCAGAAACACAGTCAGATCAGCTTCAAACATGGACCCTACTGTCCCGGGGAAGCTCCTACGCTTGCTCTTCCATGACTGCTTTGTGGAGGGTTGTGATGCCTCTGTGCTTCTACAAGGAAATGGAACTGAGAGAAGCGATCCAGCAAACCAATCTCTGGGAGGGTTTTCAGTTATTGATTCAGCAAAAAGACTGCTTGAAATTTTCTGTCCAGGAACTGTTTCTTGTGCTGACATTGTTGCTTTGGCTGCTAGAGATGCTGTTGAACTTACGGGAGGACCTGTGGTTCATATTCCAACTGGTAGGCGAGATGGGAAGGTTTCATCAGCTTCCAATGTCAGGCCTAATATTGTAGATACAAGCTTTACAATGACTGAGATGATAAAGCTCTTCTCTTCTAAAGGCTTGTCTTTGGAGGACCTTGTAACCCTCTCAGGAGCTCACACTATAGGAGCAGCTCATTGCAGTGCATTCAGTGACCGGTTCCAAGAAGACTCGAAAGGAAAATTCACACTCATTGACACATCTTTAGACAATGGCTATGCAGAGAAGCTCATGAAACAGTGCCCTCCAGGCGCAAATCCATCTATAACAGTCCAAAATGATCCTGAACTTCCTTTGTGTTTGATAATCATTACTACGGCAATCTATTGGCCCACAGAGGGCTGTTTCAATCAGATTCTGTCCTGTTCACCGACAGTAGATCCAGCAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

663

Amino Acids

74.13

Weight (kDa)

5.1

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	1 - 229	1.9e-14	Calcineurin-like phosphoesterase
DBR1	PF05011	243 - 324	1e-17	Lariat debranching enzyme, C-terminal domain
peroxidase	PF00141	425 - 629	9.6e-65	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	381, 426, 1001
AasI	GACNNNNNNGTC	1 cut(s)	1313
Acc36I	ACCTGC	2 cut(s)	634, 769
AccB1I	GGYRCC	1 cut(s)	301
AccB7I	CCANNNNNTGG	1 cut(s)	1429
AccII	CGCG	1 cut(s)	388
AciI	CCGC	2 cut(s)	111, 299
AclWI	GGATC	3 cut(s)	1406, 1871, 1970
AcsI	RAATTY	8 cut(s)	375, 689, 733, 892, 976, 1234, 1473, 1778
AcuI	CTGAAG	1 cut(s)	1194
AfaI	GTAC	6 cut(s)	50, 173, 200, 284, 812, 906
AfiI	CCNNNNNNNGG	7 cut(s)	174, 549, 600, 1042, 1429, 1611, 1934
AflIII	ACRYGT	2 cut(s)	45, 1068
AgeI	ACCGGT	2 cut(s)	174, 1752
AgsI	TTSAA	7 cut(s)	652, 976, 1234, 1299, 1472, 1538, 1945
AjnI	CCWGG	8 cut(s)	36, 120, 612, 760, 802, 1091, 1483, 1843
AloI	GAACNNNNNNTCC	2 cut(s)	1542, 1574
Alw21I	GWGCWC	1 cut(s)	1714
Alw26I	GTCTC	4 cut(s)	384, 584, 1023, 1113
AlwI	GGATC	3 cut(s)	1406, 1871, 1970
AlwNI	CAGNNNCTG	2 cut(s)	1490, 1954
Ama87I	CYCGRG	1 cut(s)	1318
AoxI	GGCC	8 cut(s)	364, 416, 527, 721, 800, 806, 1613, 1925
ApeKI	GCWGC	5 cut(s)	108, 629, 695, 1520, 1727
ApoI	RAATTY	8 cut(s)	375, 689, 733, 892, 976, 1234, 1473, 1778
AsiGI	ACCGGT	2 cut(s)	174, 1752
Asp700I	GAANNNNTTC	4 cut(s)	75, 188, 1134, 1492
AspLEI	GCGC	1 cut(s)	1850
AspS9I	GGNCC	8 cut(s)	177, 722, 800, 806, 1306, 1550, 1690, 1926
AsuC2I	CCSGG	2 cut(s)	1319, 1320
AsuHPI	GGTGA	3 cut(s)	44, 532, 1956
AvaI	CYCGRG	1 cut(s)	1318
AvaII	GGWCC	4 cut(s)	177, 1306, 1550, 1690
BaeGI	GKGCMC	2 cut(s)	165, 1841
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	2 cut(s)	966, 1714
BauI	CACGAG	1 cut(s)	699
BbsI	GAAGAC	2 cut(s)	1170, 1770
Bbv12I	GWGCWC	1 cut(s)	1714
BbvI	GCAGC	5 cut(s)	95, 616, 682, 1507, 1739
BccI	CCATC	5 cut(s)	713, 1002, 1114, 1577, 1864
BceAI	ACGGC	2 cut(s)	793, 1929
BcgI	CGANNNNNNTGC	4 cut(s)	551, 585, 908, 942
BciT130I	CCWGG	8 cut(s)	38, 122, 614, 762, 804, 1093, 1485, 1845
BciVI	GTATCC	1 cut(s)	1099
BcnI	CCSGG	2 cut(s)	1319, 1320
BcoDI	GTCTC	4 cut(s)	384, 584, 1023, 1113
BfaI	CTAG	3 cut(s)	641, 839, 1524
BfmI	CTRYAG	1 cut(s)	1719
BfuAI	ACCTGC	2 cut(s)	634, 769
BfuI	GTATCC	1 cut(s)	1099
BglI	GCCNNNNNGGC	1 cut(s)	1845
BisI	GCNGC	7 cut(s)	109, 112, 300, 630, 696, 1521, 1728
BlpI	GCTNAGC	1 cut(s)	1263
BlsI	GCNGC	7 cut(s)	110, 113, 301, 631, 697, 1522, 1729
BmcAI	AGTACT	1 cut(s)	200
Bme18I	GGWCC	4 cut(s)	177, 1306, 1550, 1690
BmeT110I	CYCGRG	1 cut(s)	1318
BmgT120I	GGNCC	8 cut(s)	177, 722, 800, 806, 1306, 1550, 1690, 1926
BmiI	GGNNCC	7 cut(s)	303, 498, 724, 963, 1029, 1308, 1757
BmsI	GCATC	5 cut(s)	546, 1177, 1192, 1360, 1519
BpiI	GAAGAC	2 cut(s)	1170, 1770
BpmI	CTGGAG	3 cut(s)	59, 1203, 1827
Bpu1102I	GCTNAGC	1 cut(s)	1263
BpuEI	CTTGAG	1 cut(s)	175
BpuMI	CCSGG	2 cut(s)	1319, 1320
Bsa29I	ATCGAT	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	612, 613, 803, 1318, 1319
BsaWI	WCCGGW	2 cut(s)	174, 1752
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 1539, 1569
Bsc4I	CCNNNNNNNGG	7 cut(s)	174, 549, 600, 1042, 1429, 1611, 1934
Bse118I	RCCGGY	2 cut(s)	174, 1752
Bse1I	ACTGG	2 cut(s)	560, 1576
Bse3DI	GCAATG	1 cut(s)	1732
BseBI	CCWGG	8 cut(s)	38, 122, 614, 762, 804, 1093, 1485, 1845
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	5 cut(s)	612, 613, 803, 1318, 1319
BseGI	GGATG	2 cut(s)	26, 1159
BseLI	CCNNNNNNNGG	7 cut(s)	174, 549, 600, 1042, 1429, 1611, 1934
BseMI	GCAATG	1 cut(s)	1732
BseMII	CTCAG	5 cut(s)	810, 1254, 1392, 1638, 1719
BseNI	ACTGG	2 cut(s)	560, 1576
BseRI	GAGGAG	4 cut(s)	89, 92, 227, 974
BseSI	GKGCMC	2 cut(s)	165, 1841
BseXI	GCAGC	5 cut(s)	95, 616, 682, 1507, 1739
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	1239
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	8 cut(s)	366, 418, 529, 723, 802, 808, 1615, 1927
BshNI	GGYRCC	1 cut(s)	301
BshTI	ACCGGT	2 cut(s)	174, 1752
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	1714
BsiHKCI	CYCGRG	1 cut(s)	1318
BsiSI	CCGG	4 cut(s)	175, 207, 1319, 1753
BsiWI	CGTACG	1 cut(s)	810
BslFI	GGGAC	2 cut(s)	566, 1301
BslI	CCNNNNNNNGG	7 cut(s)	174, 549, 600, 1042, 1429, 1611, 1934
BsmAI	GTCTC	4 cut(s)	384, 584, 1023, 1113
BsmBI	CGTCTC	1 cut(s)	1113
BsmFI	GGGAC	2 cut(s)	566, 1301
BsmI	GAATGC	1 cut(s)	1742
BsnI	GGCC	8 cut(s)	366, 418, 529, 723, 802, 808, 1615, 1927
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	1318
Bsp1286I	GDGCHC	4 cut(s)	165, 966, 1714, 1841
Bsp1407I	TGTACA	2 cut(s)	48, 904
Bsp143I	GATC	5 cut(s)	216, 1289, 1411, 1876, 1975
Bsp1720I	GCTNAGC	1 cut(s)	1263
Bsp68I	TCGCGA	1 cut(s)	388
BspACI	CCGC	2 cut(s)	111, 299
BspANI	GGCC	8 cut(s)	366, 418, 529, 723, 802, 808, 1615, 1927
BspCNI	CTCAG	5 cut(s)	809, 1255, 1393, 1639, 1718
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	1827
BspLI	GGNNCC	7 cut(s)	303, 498, 724, 963, 1029, 1308, 1757
BspMI	ACCTGC	2 cut(s)	634, 769
BspPI	GGATC	3 cut(s)	1406, 1871, 1970
BspQI	GCTCTTC	2 cut(s)	1346, 1667
BspT107I	GGYRCC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	1732
BsrFI	RCCGGY	2 cut(s)	174, 1752
BsrGI	TGTACA	2 cut(s)	48, 904
BsrI	ACTGG	2 cut(s)	560, 1576
BssAI	RCCGGY	2 cut(s)	174, 1752
BssECI	CCNNGG	5 cut(s)	612, 613, 803, 1318, 1319
BssMI	GATC	5 cut(s)	216, 1289, 1411, 1876, 1975
BssSI	CACGAG	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	699
Bst2UI	CCWGG	8 cut(s)	38, 122, 614, 762, 804, 1093, 1485, 1845
Bst4CI	ACNGT	9 cut(s)	32, 282, 439, 1285, 1315, 1492, 1836, 1867, 1972
Bst6I	CTCTTC	5 cut(s)	1125, 1170, 1346, 1667, 1672
BstAUI	TGTACA	2 cut(s)	48, 904
BstC8I	GCNNGC	1 cut(s)	1337
BstDEI	CTNAG	6 cut(s)	796, 945, 1263, 1401, 1647, 1705
BstEII	GGTNACC	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	26, 1159
BstFNI	CGCG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	1850
BstKTI	GATC	5 cut(s)	219, 1292, 1414, 1879, 1978
BstMAI	GTCTC	4 cut(s)	384, 584, 1023, 1113
BstMBI	GATC	5 cut(s)	216, 1289, 1411, 1876, 1975
BstMWI	GCNNNNNNNGC	7 cut(s)	363, 1178, 1187, 1211, 1520, 1529, 1845
BstNI	CCWGG	8 cut(s)	38, 122, 614, 762, 804, 1093, 1485, 1845
BstNSI	RCATGY	1 cut(s)	1072
BstPI	GGTNACC	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	1719
BstSLI	GKGCMC	2 cut(s)	165, 1841
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	5 cut(s)	95, 616, 682, 1507, 1739
BstV2I	GAAGAC	2 cut(s)	1170, 1770
BstX2I	RGATCY	1 cut(s)	1975
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	1975
Bsu15I	ATCGAT	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	1099
BsuRI	GGCC	8 cut(s)	366, 418, 529, 723, 802, 808, 1615, 1927
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	26, 1159
BtsI	GCAGTG	3 cut(s)	18, 682, 1744
BtsIMutI	CAGTG	5 cut(s)	18, 682, 1744, 1753, 1841
BtuMI	TCGCGA	1 cut(s)	388
BveI	ACCTGC	2 cut(s)	634, 769
Cac8I	GCNNGC	1 cut(s)	1337
CaiI	CAGNNNCTG	2 cut(s)	1490, 1954
CciI	TCATGA	1 cut(s)	1827
CfoI	GCGC	1 cut(s)	1850
Cfr10I	RCCGGY	2 cut(s)	174, 1752
Cfr13I	GGNCC	8 cut(s)	177, 722, 800, 806, 1306, 1550, 1690, 1926
Cfr9I	CCCGGG	1 cut(s)	1318
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	6 cut(s)	49, 172, 199, 283, 811, 905
CspAI	ACCGGT	2 cut(s)	174, 1752
CviQI	GTAC	6 cut(s)	49, 172, 199, 283, 811, 905
DdeI	CTNAG	6 cut(s)	796, 945, 1263, 1401, 1647, 1705
DpnI	GATC	5 cut(s)	218, 1291, 1413, 1878, 1977
DpnII	GATC	5 cut(s)	216, 1289, 1411, 1876, 1975
DrdI	GACNNNNNNGTC	1 cut(s)	1313
DseDI	GACNNNNNNGTC	1 cut(s)	1313
Eam1104I	CTCTTC	5 cut(s)	1125, 1170, 1346, 1667, 1672
EarI	CTCTTC	5 cut(s)	1125, 1170, 1346, 1667, 1672
Ecl136II	GAGCTC	1 cut(s)	1712
Eco147I	AGGCCT	2 cut(s)	418, 1615
Eco24I	GRGCYC	2 cut(s)	966, 1714
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	4 cut(s)	177, 1306, 1550, 1690
Eco53kI	GAGCTC	1 cut(s)	1712
Eco57I	CTGAAG	1 cut(s)	1194
Eco88I	CYCGRG	1 cut(s)	1318
Eco91I	GGTNACC	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	1712
EcoO109I	RGGNCCY	2 cut(s)	1550, 1690
EcoO65I	GGTNACC	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	976
EcoRII	CCWGG	8 cut(s)	36, 120, 612, 760, 802, 1091, 1483, 1843
EcoT38I	GRGCYC	2 cut(s)	966, 1714
Esp3I	CGTCTC	1 cut(s)	1113
FaqI	GGGAC	2 cut(s)	566, 1301
Fnu4HI	GCNGC	7 cut(s)	109, 112, 300, 630, 696, 1521, 1728
FokI	GGATG	2 cut(s)	33, 1166
FriOI	GRGCYC	2 cut(s)	966, 1714
Fsp4HI	GCNGC	7 cut(s)	109, 112, 300, 630, 696, 1521, 1728
FspBI	CTAG	3 cut(s)	641, 839, 1524
GlaI	GCGC	1 cut(s)	1849
GluI	GCNGC	7 cut(s)	109, 112, 300, 630, 696, 1521, 1728
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	3 cut(s)	59, 1203, 1827
HaeIII	GGCC	8 cut(s)	366, 418, 529, 723, 802, 808, 1615, 1927
HapII	CCGG	4 cut(s)	175, 207, 1319, 1753
HhaI	GCGC	1 cut(s)	1850
Hin6I	GCGC	1 cut(s)	1848
HinP1I	GCGC	1 cut(s)	1848
HindIII	AAGCTT	2 cut(s)	258, 1633
HinfI	GANTC	8 cut(s)	794, 817, 1076, 1096, 1135, 1451, 1766, 1951
HpaII	CCGG	4 cut(s)	175, 207, 1319, 1753
HphI	GGTGA	3 cut(s)	44, 532, 1956
Hpy166II	GTNNAC	5 cut(s)	49, 475, 623, 905, 1964
Hpy188I	TCNGA	6 cut(s)	347, 852, 1084, 1277, 1289, 1950
Hpy8I	GTNNAC	5 cut(s)	49, 475, 623, 905, 1964
HpyAV	CCTTC	6 cut(s)	11, 133, 199, 362, 1266, 1582
HpyCH4III	ACNGT	9 cut(s)	32, 282, 439, 1285, 1315, 1492, 1836, 1867, 1972
HpyCH4IV	ACGT	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	7 cut(s)	363, 1178, 1187, 1211, 1520, 1529, 1845
HpyF3I	CTNAG	6 cut(s)	796, 945, 1263, 1401, 1647, 1705
HpySE526I	ACGT	1 cut(s)	45
HspAI	GCGC	1 cut(s)	1848
Kzo9I	GATC	5 cut(s)	216, 1289, 1411, 1876, 1975
LguI	GCTCTTC	2 cut(s)	1346, 1667
LmnI	GCTCC	6 cut(s)	226, 961, 996, 1332, 1709, 1724
Lsp1109I	GCAGC	5 cut(s)	95, 616, 682, 1507, 1739
LweI	GCATC	5 cut(s)	546, 1177, 1192, 1360, 1519
MaeI	CTAG	3 cut(s)	641, 839, 1524
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	4 cut(s)	32, 727, 1696, 1748
MalI	GATC	5 cut(s)	218, 1291, 1413, 1878, 1977
MboI	GATC	5 cut(s)	216, 1289, 1411, 1876, 1975
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	1 cut(s)	1975
MhlI	GDGCHC	4 cut(s)	165, 966, 1714, 1841
MlyI	GAGTC	3 cut(s)	788, 1105, 1760
MmeI	TCCRAC	2 cut(s)	85, 1592
MroXI	GAANNNNTTC	4 cut(s)	75, 188, 1134, 1492
MseI	TTAA	1 cut(s)	858
MslI	CAYNNNNRTG	3 cut(s)	459, 1200, 1737
MspI	CCGG	4 cut(s)	175, 207, 1319, 1753
MunI	CAATTG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	1742
MvaI	CCWGG	8 cut(s)	38, 122, 614, 762, 804, 1093, 1485, 1845
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	7 cut(s)	363, 1178, 1187, 1211, 1520, 1529, 1845
NciI	CCSGG	2 cut(s)	1319, 1320
NdeII	GATC	5 cut(s)	216, 1289, 1411, 1876, 1975
NlaIV	GGNNCC	7 cut(s)	303, 498, 724, 963, 1029, 1308, 1757
NmuCI	GTSAC	3 cut(s)	32, 727, 1748
NruI	TCGCGA	1 cut(s)	388
NspI	RCATGY	1 cut(s)	1072
PagI	TCATGA	1 cut(s)	1827
PasI	CCCWGGG	1 cut(s)	613
PceI	AGGCCT	2 cut(s)	418, 1615
PciI	ACATGT	1 cut(s)	1068
PciSI	GCTCTTC	2 cut(s)	1346, 1667
PctI	GAATGC	1 cut(s)	1742
PdmI	GAANNNNTTC	4 cut(s)	75, 188, 1134, 1492
PfeI	GAWTC	5 cut(s)	817, 1076, 1135, 1451, 1951
Pfl23II	CGTACG	1 cut(s)	810
PflMI	CCANNNNNTGG	1 cut(s)	1429
PfoI	TCCNGGA	3 cut(s)	760, 1091, 1483
PinAI	ACCGGT	2 cut(s)	174, 1752
PkrI	GCNGC	7 cut(s)	110, 113, 301, 631, 697, 1522, 1729
PleI	GAGTC	3 cut(s)	788, 1104, 1760
PpsI	GAGTC	3 cut(s)	788, 1104, 1760
PpuMI	RGGWCCY	2 cut(s)	1550, 1690
PscI	ACATGT	1 cut(s)	1068
PsiI	TTATAA	3 cut(s)	381, 426, 1001
Psp124BI	GAGCTC	1 cut(s)	1714
Psp5II	RGGWCCY	2 cut(s)	1550, 1690
Psp6I	CCWGG	8 cut(s)	36, 120, 612, 760, 802, 1091, 1483, 1843
PspEI	GGTNACC	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	8 cut(s)	36, 120, 612, 760, 802, 1091, 1483, 1843
PspLI	CGTACG	1 cut(s)	810
PspN4I	GGNNCC	7 cut(s)	303, 498, 724, 963, 1029, 1308, 1757
PspPI	GGNCC	8 cut(s)	177, 722, 800, 806, 1306, 1550, 1690, 1926
PspPPI	RGGWCCY	2 cut(s)	1550, 1690
PsrI	GAACNNNNNNTAC	2 cut(s)	441, 473
PstNI	CAGNNNCTG	2 cut(s)	1490, 1954
PsuI	RGATCY	1 cut(s)	1975
RruI	TCGCGA	1 cut(s)	388
RsaI	GTAC	6 cut(s)	50, 173, 200, 284, 812, 906
RsaNI	GTAC	6 cut(s)	49, 172, 199, 283, 811, 905
RseI	CAYNNNNRTG	3 cut(s)	459, 1200, 1737
SacI	GAGCTC	1 cut(s)	1714
SapI	GCTCTTC	2 cut(s)	1346, 1667
SaqAI	TTAA	1 cut(s)	858
SatI	GCNGC	7 cut(s)	109, 112, 300, 630, 696, 1521, 1728
Sau3AI	GATC	5 cut(s)	216, 1289, 1411, 1876, 1975
Sau96I	GGNCC	8 cut(s)	177, 722, 800, 806, 1306, 1550, 1690, 1926
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	3 cut(s)	788, 1105, 1760
SduI	GDGCHC	4 cut(s)	165, 966, 1714, 1841
SfaNI	GCATC	5 cut(s)	546, 1177, 1192, 1360, 1519
SfcI	CTRYAG	1 cut(s)	1719
SinI	GGWCC	4 cut(s)	177, 1306, 1550, 1690
SmaI	CCCGGG	1 cut(s)	1320
SmiMI	CAYNNNNRTG	3 cut(s)	459, 1200, 1737
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SseBI	AGGCCT	2 cut(s)	418, 1615
SsiI	CCGC	2 cut(s)	111, 299
SspI	AATATT	2 cut(s)	310, 1621
SspMI	CTAG	3 cut(s)	641, 839, 1524
SstI	GAGCTC	1 cut(s)	1714
StuI	AGGCCT	2 cut(s)	418, 1615
TaaI	ACNGT	9 cut(s)	32, 282, 439, 1285, 1315, 1492, 1836, 1867, 1972
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	4 cut(s)	93, 504, 571, 1769
TaqII	GACCGA	1 cut(s)	608
TatI	WGTACW	4 cut(s)	48, 198, 282, 904
TauI	GCSGC	2 cut(s)	114, 302
TfiI	GAWTC	5 cut(s)	817, 1076, 1135, 1451, 1951
Tru1I	TTAA	1 cut(s)	858
Tru9I	TTAA	1 cut(s)	858
TscAI	CASTG	5 cut(s)	18, 689, 1744, 1753, 1841
TseFI	GTSAC	3 cut(s)	32, 727, 1748
TseI	GCWGC	5 cut(s)	108, 629, 695, 1520, 1727
Tsp45I	GTSAC	3 cut(s)	32, 727, 1748
TspGWI	ACGGA	1 cut(s)	303
TspMI	CCCGGG	1 cut(s)	1318
TspRI	CASTG	5 cut(s)	18, 689, 1744, 1753, 1841
Van91I	CCANNNNNTGG	1 cut(s)	1429
VpaK11BI	GGWCC	4 cut(s)	177, 1306, 1550, 1690
XapI	RAATTY	8 cut(s)	375, 689, 733, 892, 976, 1234, 1473, 1778
XceI	RCATGY	1 cut(s)	1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1147
XmaI	CCCGGG	1 cut(s)	1318
XmnI	GAANNNNTTC	4 cut(s)	75, 188, 1134, 1492
XspI	CTAG	3 cut(s)	641, 839, 1524
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.