Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Reverse (-)

59707310 .. 59709220

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG411100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAAATTGCAGTGGAAGGATGTATGCACGGTGACCTGGAGAACGTGTACAGAACCCTCCAACACATAGAAAAAGTTCATAACACCAAAATCGACCTCCTCCTCTGCTGCGGCGACTTTCAGGCTGTGAGGAATGAGAAGGATTTGGAGAGCTTGAGTGTGCCCCCCAAGTACCGTTCCATGAACTCCTTCTGGAAGTACTATTCCGGCGAGGAGATCGCTCCCTATCCCACCATATTCATCGGTGGCAATCACGAGGCTTGTAATTATTTGTGGGAACTGTACTACGGTGGGTGGGCGGCACCTAATATATACTTCTTGGGGTTTGCTGGGGTAGTCAAGTTCGGAAACCTTCGCATTGGTGGCCTCTCTGGAATTTATAAGTCGCGAGACTATCGTTCAGGACACTATGAGAGGCCTCCTTATAATGCAAATACCGTCAAGTCTGTATATCATGTTCGTGAGTATGATGTCCACAAACTCATGCAAGTTGAGGAACCAATCGATATTTTTCTTTCACATGATTGGCCTCTTGGCATCACCGATTGTGGGGACTGGAAGCAACTTGTTCGATACAAACCTCATTTTGAGACCGAGGTTCGGGAAAGAACCCTGGGAAGTAAACCTGCTGCTCAATTGCTAGAAAAATTGAAACCACCCTATTGGTTTTCAGCTCATCTACACTGCAAATTTGCTGCTCGTGTTCAGCATGGGGAAGATGGTCCAGTGACGAATTTTCTTGCTCTTGATAAGTGTCTTCCTGGAAAGAAGTTTTTGCAGGTTCTTGATATTGACTCAGAGCCAGGGCCGTACGAGATTCAGTATGATGAAGAATGGCTAGAAATAACTCGGAGGTTTAACCCTATTTTCCCTCTCACAATCAGGAGTGCAAATTTCAGGGGTGTACATATTGACAAGCAAGATTGTCGTCAATGGGTAAGGAGTAAGCTACAAGCAAGAGGAGCCCGACCTTTTGAATTCAGCCAGACAGCTCCATCTTATAATCCCTCTAATTCTGTCTCAAATGGTTCCTCGCCTGGTAGGAGTTTACTATGGGAATCATGTCTCCTTATTCTAATATCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

362

Amino Acids

41.7

Weight (kDa)

7.19

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	1 - 229	6.9e-15	Calcineurin-like phosphoesterase
DBR1	PF05011	243 - 338	7.2e-23	Lariat debranching enzyme, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	381, 426, 1002
Acc36I	ACCTGC	2 cut(s)	634, 769
AccB1I	GGYRCC	1 cut(s)	301
AccII	CGCG	1 cut(s)	388
AciI	CCGC	2 cut(s)	111, 299
AcsI	RAATTY	5 cut(s)	375, 689, 733, 892, 977
AfaI	GTAC	6 cut(s)	50, 173, 200, 284, 812, 906
AfiI	CCNNNNNNNGG	2 cut(s)	549, 600
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	652, 977
AjnI	CCWGG	5 cut(s)	36, 612, 760, 802, 1036
AluBI	AGCT	4 cut(s)	153, 674, 949, 992
AluI	AGCT	4 cut(s)	153, 674, 949, 992
Alw26I	GTCTC	4 cut(s)	384, 584, 1024, 1070
AoxI	GGCC	4 cut(s)	364, 416, 527, 806
ApeKI	GCWGC	3 cut(s)	108, 629, 695
ApoI	RAATTY	5 cut(s)	375, 689, 733, 892, 977
Asp700I	GAANNNNTTC	2 cut(s)	75, 188
AspS9I	GGNCC	2 cut(s)	722, 806
AsuHPI	GGTGA	2 cut(s)	44, 532
AvaII	GGWCC	1 cut(s)	722
BaeGI	GKGCMC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	967
BauI	CACGAG	2 cut(s)	254, 699
BbsI	GAAGAC	1 cut(s)	749
BbvI	GCAGC	3 cut(s)	95, 616, 682
BccI	CCATC	2 cut(s)	713, 1003
BceAI	ACGGC	1 cut(s)	793
BcgI	CGANNNNNNTGC	4 cut(s)	551, 585, 908, 942
BciT130I	CCWGG	5 cut(s)	38, 614, 762, 804, 1038
BcoDI	GTCTC	4 cut(s)	384, 584, 1024, 1070
BfaI	CTAG	2 cut(s)	641, 839
BfuAI	ACCTGC	2 cut(s)	634, 769
BisI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
BlsI	GCNGC	5 cut(s)	110, 113, 301, 631, 697
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	5 cut(s)	38, 614, 762, 804, 1038
Bme18I	GGWCC	1 cut(s)	722
BmgT120I	GGNCC	2 cut(s)	722, 806
BmiI	GGNNCC	4 cut(s)	303, 498, 964, 1030
BmrFI	CCNGG	5 cut(s)	38, 614, 762, 804, 1038
BmsI	GCATC	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	749
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	175
Bsa29I	ATCGAT	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	4 cut(s)	594, 612, 613, 803
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 600
Bse1I	ACTGG	2 cut(s)	560, 725
BseBI	CCWGG	5 cut(s)	38, 614, 762, 804, 1038
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	4 cut(s)	594, 612, 613, 803
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	549, 600
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	2 cut(s)	560, 725
BseRI	GAGGAG	4 cut(s)	89, 92, 227, 975
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	95, 616, 682
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	4 cut(s)	366, 418, 529, 808
BshNI	GGYRCC	1 cut(s)	301
BshVI	ATCGAT	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	207
BsiWI	CGTACG	1 cut(s)	810
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	549, 600
BsmAI	GTCTC	4 cut(s)	384, 584, 1024, 1070
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	4 cut(s)	366, 418, 529, 808
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	165, 967
Bsp1407I	TGTACA	2 cut(s)	48, 904
Bsp143I	GATC	1 cut(s)	216
Bsp68I	TCGCGA	1 cut(s)	388
BspACI	CCGC	2 cut(s)	111, 299
BspANI	GGCC	4 cut(s)	366, 418, 529, 808
BspCNI	CTCAG	1 cut(s)	809
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	388
BspLI	GGNNCC	4 cut(s)	303, 498, 964, 1030
BspMI	ACCTGC	2 cut(s)	634, 769
BspT107I	GGYRCC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	584
BsrGI	TGTACA	2 cut(s)	48, 904
BsrI	ACTGG	2 cut(s)	560, 725
BssECI	CCNNGG	4 cut(s)	594, 612, 613, 803
BssMI	GATC	1 cut(s)	216
BssSI	CACGAG	2 cut(s)	254, 699
Bst2BI	CACGAG	2 cut(s)	254, 699
Bst2UI	CCWGG	5 cut(s)	38, 614, 762, 804, 1038
Bst4CI	ACNGT	5 cut(s)	32, 176, 282, 290, 439
BstAUI	TGTACA	2 cut(s)	48, 904
BstDEI	CTNAG	1 cut(s)	796
BstEII	GGTNACC	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	388
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	4 cut(s)	384, 584, 1024, 1070
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 962
BstNI	CCWGG	5 cut(s)	38, 614, 762, 804, 1038
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	5 cut(s)	36, 612, 760, 802, 1036
BstSLI	GKGCMC	1 cut(s)	165
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	3 cut(s)	95, 616, 682
BstV2I	GAAGAC	1 cut(s)	749
BstXI	CCANNNNNNTGG	1 cut(s)	663
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	4 cut(s)	366, 418, 529, 808
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	26
BtsI	GCAGTG	2 cut(s)	18, 682
BtsIMutI	CAGTG	3 cut(s)	18, 682, 732
BtuMI	TCGCGA	1 cut(s)	388
BveI	ACCTGC	2 cut(s)	634, 769
Cfr13I	GGNCC	2 cut(s)	722, 806
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	6 cut(s)	49, 172, 199, 283, 811, 905
CviAII	CATG	7 cut(s)	181, 455, 484, 521, 710, 1062, 1083
CviQI	GTAC	6 cut(s)	49, 172, 199, 283, 811, 905
DdeI	CTNAG	1 cut(s)	796
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	967
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	722
Eco91I	GGTNACC	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	5 cut(s)	36, 612, 760, 802, 1036
EcoT38I	GRGCYC	1 cut(s)	967
FaeI	CATG	7 cut(s)	184, 458, 487, 524, 713, 1065, 1086
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	7 cut(s)	180, 454, 483, 520, 709, 1061, 1082
Fnu4HI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
FokI	GGATG	1 cut(s)	33
FriOI	GRGCYC	1 cut(s)	967
Fsp4HI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
FspBI	CTAG	2 cut(s)	641, 839
GluI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	4 cut(s)	366, 418, 529, 808
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	7 cut(s)	184, 458, 487, 524, 713, 1065, 1086
HinfI	GANTC	3 cut(s)	794, 817, 1058
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	44, 532
Hpy166II	GTNNAC	5 cut(s)	49, 475, 623, 905, 1049
Hpy188I	TCNGA	3 cut(s)	347, 799, 852
Hpy8I	GTNNAC	5 cut(s)	49, 475, 623, 905, 1049
HpyAV	CCTTC	4 cut(s)	11, 133, 199, 362
HpyCH4III	ACNGT	5 cut(s)	32, 176, 282, 290, 439
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	7 cut(s)	11, 28, 431, 487, 687, 778, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 962
HpyF3I	CTNAG	1 cut(s)	796
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	7 cut(s)	184, 458, 487, 524, 713, 1065, 1086
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	3 cut(s)	226, 962, 997
Lsp1109I	GCAGC	3 cut(s)	95, 616, 682
LweI	GCATC	1 cut(s)	546
MaeI	CTAG	2 cut(s)	641, 839
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	32, 727
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	3 cut(s)	728, 749, 842
MfeI	CAATTG	1 cut(s)	635
MhlI	GDGCHC	2 cut(s)	165, 967
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	1 cut(s)	85
MroXI	GAANNNNTTC	2 cut(s)	75, 188
MseI	TTAA	1 cut(s)	858
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	5 cut(s)	38, 614, 762, 804, 1038
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	5 cut(s)	38, 614, 762, 804, 1038
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	363, 962
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	7 cut(s)	184, 458, 487, 524, 713, 1065, 1086
NlaIV	GGNNCC	4 cut(s)	303, 498, 964, 1030
NmuCI	GTSAC	2 cut(s)	32, 727
NruI	TCGCGA	1 cut(s)	388
PasI	CCCWGGG	1 cut(s)	613
PceI	AGGCCT	1 cut(s)	418
PdmI	GAANNNNTTC	2 cut(s)	75, 188
PfeI	GAWTC	2 cut(s)	817, 1058
Pfl23II	CGTACG	1 cut(s)	810
PfoI	TCCNGGA	1 cut(s)	760
PkrI	GCNGC	5 cut(s)	110, 113, 301, 631, 697
PleI	GAGTC	1 cut(s)	788
PpsI	GAGTC	1 cut(s)	788
PsiI	TTATAA	3 cut(s)	381, 426, 1002
Psp6I	CCWGG	5 cut(s)	36, 612, 760, 802, 1036
PspEI	GGTNACC	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	5 cut(s)	36, 612, 760, 802, 1036
PspLI	CGTACG	1 cut(s)	810
PspN4I	GGNNCC	4 cut(s)	303, 498, 964, 1030
PspPI	GGNCC	2 cut(s)	722, 806
PsrI	GAACNNNNNNTAC	2 cut(s)	441, 473
RruI	TCGCGA	1 cut(s)	388
RsaI	GTAC	6 cut(s)	50, 173, 200, 284, 812, 906
RsaNI	GTAC	6 cut(s)	49, 172, 199, 283, 811, 905
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	858
SatI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	2 cut(s)	722, 806
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	5 cut(s)	38, 614, 762, 804, 1038
SduI	GDGCHC	2 cut(s)	165, 967
SfaNI	GCATC	1 cut(s)	546
SinI	GGWCC	1 cut(s)	722
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	111, 299
SspMI	CTAG	2 cut(s)	641, 839
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	5 cut(s)	36, 612, 760, 802, 1036
TaaI	ACNGT	5 cut(s)	32, 176, 282, 290, 439
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	93, 504, 571
TaqII	GACCGA	1 cut(s)	608
TatI	WGTACW	4 cut(s)	48, 198, 282, 904
TauI	GCSGC	2 cut(s)	114, 302
TfiI	GAWTC	2 cut(s)	817, 1058
Tru1I	TTAA	1 cut(s)	858
Tru9I	TTAA	1 cut(s)	858
TscAI	CASTG	3 cut(s)	18, 689, 732
TseFI	GTSAC	2 cut(s)	32, 727
TseI	GCWGC	3 cut(s)	108, 629, 695
Tsp45I	GTSAC	2 cut(s)	32, 727
TspDTI	ATGAA	5 cut(s)	17, 68, 197, 229, 843
TspRI	CASTG	3 cut(s)	18, 689, 732
VpaK11BI	GGWCC	1 cut(s)	722
XapI	RAATTY	5 cut(s)	375, 689, 733, 892, 977
XmnI	GAANNNNTTC	2 cut(s)	75, 188
XspI	CTAG	2 cut(s)	641, 839
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.