RchiOBHm_Chr2g0135121

Lariat debranching

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
52186825 .. 52188216
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50607

Sequence Viewer

Length: 1392 bp
ATGAAAATTGCAGTAGAAGGTTGCATGCATGGTGACCTCGACAATGTCTACAGGACCCTCCAACATATCGAAAGAATCCACGACACCAAAATCGACCTCCTCCTCTGCTGCGGCGACTTTCAGGCCGTCAGGAATGAACACGATTTGAAGAGCTTAAAGGCGTCTCCAAAACACCGGAAGATGAACTCCTTTTGGAAGTACTATTCCGGCGAGGCCATCGCTCCCTATCCCACCATATTCATCGGCGGCAACCACGAAGCTTCTAACTATCTCTGGGAACTCTACTACGGAGGTTGGGCCGCACCTAACATATACTTCTTAGGGTTTGCTGGGGTCGTCAAGTTCGGACACCTTCGCATTGGTGGCCTCTCTGGTATTTATAAATCGCGAGATCACTATAGTTCAGGACACTATGAGAGGCCTCCTTATAATGAACAGACCATCAAGTCTGTATATCATGTTCGCGAGTATGACGTACACAAACTCATGCAGGTTGAGGAACCGATAGATATTTTTCTTTCACATGATTGGCCTGTAAACATCACTGATCATGGAGACTTGAAGCAACTCCTTCAAAAGAAACCATTTTTTACGAAGGAGGTTCGGGAGAAAAAGCTGGGAAGTGATGCTGCTGCTTACTTGCTAGAGAAACTGAAACCACCCTATTGGTTTTCAGCTCATCTGCACTGCAAATTTGCAGCTCGTGTTCAACACGGTGGGGAAGGGGGTCCGGTGACGAATTTTCTTGCTCTTGATAAGTGTGGTGAACATAGGGACTTTCTGCAGGTTATTGATGTTGAATCAGGGCCAGGGCCTTATGAGATTCAATATGATGAGGAATGGCTCGAAATAACTAGACGGTTTAACCCTGCTTTCCCTCTCACCATCGCAAGTGCGAATTTCAGTAATGTGTATCTTGACAAGGAAGCTTGTCGAAACTGGGTGAGGAGTAAGCTACAAGCAAGAGGAGCCAGACCTTTTGAATTCTGCCAGACAGCTCCATCCCATAATCCCTCTAAGAAATCTGATGACTCAAGTGGTGCCTTTCCTGTATGTCCTAGGAATCCTCAAACAGAATCTTTGTTGCAGTTTCTGGAACTTCCTTACCTTCTTGATAACATGTCAGAATCTTCGGATGCAACAAGAAATTCTTTTCCATCTAGCCATGGTTATAATAACCCCAAAGAAATTTTCATTGATGATGCGGATGAGTCAGATCCAGCAAGAAATTTTTTTCCATCAAGCAGTAGTTACAATAACCCCGAAGAGATTTTCATTGATGATGCGGATGAGTCAGATCCAGCAAGAAATTTTTTTCCATCAAGCAGTAGTTACAATAACCCCGAAGAGATTTTTATTGATGATGTGGATGACTCAGATCCAGAAGAATGA

Protein Analysis

463

Amino Acids

52.93

Weight (kDa)

5.26

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 1 - 230 1.2e-14 Calcineurin-like phosphoesterase
DBR1 PF05011 245 - 368 1.3e-25 Lariat debranching enzyme, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 381, 429, 1173
AasI GACNNNNNNGTC 1 cut(s) 445
Acc36I ACCTGC 2 cut(s) 481, 775
AccB1I GGYRCC 1 cut(s) 1040
AccI GTMKAC 1 cut(s) 48
AccII CGCG 2 cut(s) 388, 465
AciI CCGC 5 cut(s) 111, 246, 300, 1205, 1286
AclWI GGATC 3 cut(s) 1211, 1292, 1373
AcsI RAATTY 8 cut(s) 692, 739, 898, 983, 1147, 1188, 1228, 1309
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 2 cut(s) 200, 477
AflIII ACRYGT 1 cut(s) 1119
AgsI TTSAA 7 cut(s) 148, 562, 575, 710, 800, 827, 983
AjnI CCWGG 1 cut(s) 808
AjuI GAANNNNNNNTTGG 2 cut(s) 1175, 1207
AluBI AGCT 8 cut(s) 153, 260, 616, 677, 701, 929, 955, 998
AluI AGCT 8 cut(s) 153, 260, 616, 677, 701, 929, 955, 998
Alw26I GTCTC 2 cut(s) 168, 549
AlwI GGATC 3 cut(s) 1211, 1292, 1373
AlwNI CAGNNNCTG 1 cut(s) 1093
AoxI GGCC 8 cut(s) 123, 213, 297, 364, 419, 530, 806, 812
ApeKI GCWGC 4 cut(s) 108, 629, 632, 698
ApoI RAATTY 8 cut(s) 692, 739, 898, 983, 1147, 1188, 1228, 1309
AspA2I CCTAGG 1 cut(s) 1058
AspS9I GGNCC 5 cut(s) 54, 297, 728, 806, 812
AsuHPI GGTGA 5 cut(s) 44, 745, 776, 874, 955
AvaII GGWCC 2 cut(s) 54, 728
AvrII CCTAGG 1 cut(s) 1058
BanI GGYRCC 1 cut(s) 1040
BauI CACGAG 1 cut(s) 702
BbvI GCAGC 4 cut(s) 95, 616, 619, 710
BccI CCATC 7 cut(s) 224, 449, 893, 1009, 1165, 1246, 1327
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 810
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 168, 549
BfaI CTAG 4 cut(s) 644, 855, 1059, 1161
BfmI CTRYAG 3 cut(s) 49, 397, 782
BfuAI ACCTGC 2 cut(s) 481, 775
BisI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
BlnI CCTAGG 1 cut(s) 1058
BlsI GCNGC 7 cut(s) 110, 113, 248, 301, 631, 634, 700
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 810
Bme18I GGWCC 2 cut(s) 54, 728
BmgT120I GGNCC 5 cut(s) 54, 297, 728, 806, 812
BmiI GGNNCC 5 cut(s) 56, 501, 729, 970, 1042
BmrFI CCNGG 1 cut(s) 810
BmrI ACTGGG 1 cut(s) 949
BmsI GCATC 4 cut(s) 616, 1126, 1192, 1273
BmuI ACTGGG 1 cut(s) 949
BpuEI CTTGAG 1 cut(s) 1018
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 809, 1058, 1165
BsaWI WCCGGW 2 cut(s) 174, 730
Bse1I ACTGG 1 cut(s) 944
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 3 cut(s) 809, 1058, 1165
BseGI GGATG 5 cut(s) 1001, 1141, 1213, 1294, 1375
BseMII CTCAG 1 cut(s) 1389
BseNI ACTGG 1 cut(s) 944
BseRI GAGGAG 4 cut(s) 89, 92, 961, 981
BseXI GCAGC 4 cut(s) 95, 616, 619, 710
BseYI CCCAGC 2 cut(s) 329, 616
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 2 cut(s) 388, 465
BshFI GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 808, 814
BshNI GGYRCC 1 cut(s) 1040
BsiSI CCGG 3 cut(s) 175, 207, 731
BslFI GGGAC 1 cut(s) 788
BsmAI GTCTC 2 cut(s) 168, 549
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 808, 814
Bsp143I GATC 5 cut(s) 391, 547, 1216, 1297, 1378
Bsp19I CCATGG 1 cut(s) 1165
Bsp68I TCGCGA 2 cut(s) 388, 465
BspACI CCGC 5 cut(s) 111, 246, 300, 1205, 1286
BspANI GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 808, 814
BspCNI CTCAG 1 cut(s) 1388
BspFNI CGCG 2 cut(s) 388, 465
BspLI GGNNCC 5 cut(s) 56, 501, 729, 970, 1042
BspMAI CTGCAG 1 cut(s) 786
BspMI ACCTGC 2 cut(s) 481, 775
BspPI GGATC 3 cut(s) 1211, 1292, 1373
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 1040
BsrI ACTGG 1 cut(s) 944
BssECI CCNNGG 3 cut(s) 809, 1058, 1165
BssMI GATC 5 cut(s) 391, 547, 1216, 1297, 1378
BssNI GRCGYC 1 cut(s) 161
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 2 cut(s) 1058, 1165
Bst2BI CACGAG 1 cut(s) 702
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 2 cut(s) 716, 861
Bst6I CTCTTC 3 cut(s) 143, 1260, 1341
BstACI GRCGYC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 319, 1017, 1375
BstDSI CCRYGG 1 cut(s) 1165
BstEII GGTNACC 1 cut(s) 32
BstF5I GGATG 5 cut(s) 1001, 1141, 1213, 1294, 1375
BstFNI CGCG 2 cut(s) 388, 465
BstKTI GATC 5 cut(s) 394, 550, 1219, 1300, 1381
BstMAI GTCTC 2 cut(s) 168, 549
BstMBI GATC 5 cut(s) 391, 547, 1216, 1297, 1378
BstMWI GCNNNNNNNGC 2 cut(s) 363, 968
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 2 cut(s) 28, 1123
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 808
BstSFI CTRYAG 3 cut(s) 49, 397, 782
BstUI CGCG 2 cut(s) 388, 465
BstV1I GCAGC 4 cut(s) 95, 616, 619, 710
BstX2I RGATCY 3 cut(s) 1216, 1297, 1378
BstXI CCANNNNNNTGG 1 cut(s) 666
BstYI RGATCY 3 cut(s) 1216, 1297, 1378
BsuRI GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 808, 814
BtgI CCRYGG 1 cut(s) 1165
BtgZI GCGATG 2 cut(s) 202, 871
BtsCI GGATG 5 cut(s) 1001, 1141, 1213, 1294, 1375
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 543, 685
BtuMI TCGCGA 2 cut(s) 388, 465
BveI ACCTGC 2 cut(s) 481, 775
Cac8I GCNNGC 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 1093
Cfr13I GGNCC 5 cut(s) 54, 297, 728, 806, 812
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 199, 476
CviAII CATG 8 cut(s) 25, 29, 458, 487, 524, 551, 1120, 1166
CviQI GTAC 2 cut(s) 199, 476
DdeI CTNAG 3 cut(s) 319, 1017, 1375
DpnI GATC 5 cut(s) 393, 549, 1218, 1299, 1380
DpnII GATC 5 cut(s) 391, 547, 1216, 1297, 1378
DrdI GACNNNNNNGTC 1 cut(s) 445
DseDI GACNNNNNNGTC 1 cut(s) 445
Eam1104I CTCTTC 3 cut(s) 143, 1260, 1341
EarI CTCTTC 3 cut(s) 143, 1260, 1341
Eco130I CCWWGG 2 cut(s) 1058, 1165
Eco147I AGGCCT 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 54, 728
Eco91I GGTNACC 1 cut(s) 32
EcoO109I RGGNCCY 2 cut(s) 54, 812
EcoO65I GGTNACC 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 808
EcoT14I CCWWGG 2 cut(s) 1058, 1165
EcoT22I ATGCAT 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 1058, 1165
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 8 cut(s) 28, 32, 461, 490, 527, 554, 1123, 1169
FalI AAGNNNNNCTT 2 cut(s) 1135, 1167
FaqI GGGAC 1 cut(s) 788
FatI CATG 8 cut(s) 24, 28, 457, 486, 523, 550, 1119, 1165
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
FokI GGATG 5 cut(s) 988, 1148, 1220, 1301, 1382
Fsp4HI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
FspBI CTAG 4 cut(s) 644, 855, 1059, 1161
GluI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
GsaI CCCAGC 2 cut(s) 333, 620
HaeIII GGCC 8 cut(s) 125, 215, 299, 366, 421, 532, 808, 814
HapII CCGG 3 cut(s) 175, 207, 731
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 8 cut(s) 28, 32, 461, 490, 527, 554, 1123, 1169
HindIII AAGCTT 2 cut(s) 258, 927
HpaII CCGG 3 cut(s) 175, 207, 731
HphI GGTGA 5 cut(s) 44, 745, 776, 874, 955
Hpy166II GTNNAC 4 cut(s) 49, 478, 538, 767
Hpy188I TCNGA 7 cut(s) 347, 1027, 1126, 1135, 1216, 1297, 1378
Hpy8I GTNNAC 4 cut(s) 49, 478, 538, 767
HpyAV CCTTC 6 cut(s) 11, 362, 581, 589, 716, 1118
HpyCH4III ACNGT 2 cut(s) 716, 861
HpyCH4IV ACGT 1 cut(s) 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 968
HpyF3I CTNAG 3 cut(s) 319, 1017, 1375
HpySE526I ACGT 1 cut(s) 474
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 8 cut(s) 28, 32, 461, 490, 527, 554, 1123, 1169
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 5 cut(s) 391, 547, 1216, 1297, 1378
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 3 cut(s) 226, 968, 1003
Lsp1109I GCAGC 4 cut(s) 95, 616, 619, 710
LweI GCATC 4 cut(s) 616, 1126, 1192, 1273
MaeI CTAG 4 cut(s) 644, 855, 1059, 1161
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 4 cut(s) 32, 733, 1250, 1331
MalI GATC 5 cut(s) 393, 549, 1218, 1299, 1380
MboI GATC 5 cut(s) 391, 547, 1216, 1297, 1378
MboII GAAGA 5 cut(s) 160, 190, 1122, 1277, 1358
MflI RGATCY 3 cut(s) 1216, 1297, 1378
MluCI AATT 9 cut(s) 6, 692, 739, 898, 983, 1147, 1188, 1228, 1309
MlyI GAGTC 4 cut(s) 1025, 1220, 1301, 1367
MmeI TCCRAC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 30
MseI TTAA 2 cut(s) 155, 864
MspI CCGG 3 cut(s) 175, 207, 731
MspR9I CCNGG 1 cut(s) 810
MvaI CCWGG 1 cut(s) 810
MvnI CGCG 2 cut(s) 388, 465
MwoI GCNNNNNNNGC 2 cut(s) 363, 968
NcoI CCATGG 1 cut(s) 1165
NdeII GATC 5 cut(s) 391, 547, 1216, 1297, 1378
NlaIII CATG 8 cut(s) 28, 32, 461, 490, 527, 554, 1123, 1169
NlaIV GGNNCC 5 cut(s) 56, 501, 729, 970, 1042
NmuCI GTSAC 2 cut(s) 32, 733
NruI TCGCGA 2 cut(s) 388, 465
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 2 cut(s) 28, 1123
PaeI GCATGC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 421
PciI ACATGT 1 cut(s) 1119
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 6 cut(s) 75, 800, 823, 1063, 1076, 1127
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 7 cut(s) 110, 113, 248, 301, 631, 634, 700
PleI GAGTC 4 cut(s) 1025, 1219, 1300, 1367
PpsI GAGTC 4 cut(s) 1025, 1219, 1300, 1367
PpuMI RGGWCCY 1 cut(s) 54
PscI ACATGT 1 cut(s) 1119
PsiI TTATAA 3 cut(s) 381, 429, 1173
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 808
PspEI GGTNACC 1 cut(s) 32
PspFI CCCAGC 2 cut(s) 329, 616
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 5 cut(s) 56, 501, 729, 970, 1042
PspPI GGNCC 5 cut(s) 54, 297, 728, 806, 812
PspPPI RGGWCCY 1 cut(s) 54
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
PstI CTGCAG 1 cut(s) 786
PstNI CAGNNNCTG 1 cut(s) 1093
PsuI RGATCY 3 cut(s) 1216, 1297, 1378
PsyI GACNNNGTC 1 cut(s) 44
RruI TCGCGA 2 cut(s) 388, 465
RsaI GTAC 2 cut(s) 200, 477
RsaNI GTAC 2 cut(s) 199, 476
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 155, 864
SatI GCNGC 7 cut(s) 109, 112, 247, 300, 630, 633, 699
Sau3AI GATC 5 cut(s) 391, 547, 1216, 1297, 1378
Sau96I GGNCC 5 cut(s) 54, 297, 728, 806, 812
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 4 cut(s) 1025, 1220, 1301, 1367
ScrFI CCNGG 1 cut(s) 810
SfaNI GCATC 4 cut(s) 616, 1126, 1192, 1273
SfcI CTRYAG 3 cut(s) 49, 397, 782
SinI GGWCC 2 cut(s) 54, 728
SmlI CTYRAG 1 cut(s) 1033
SmoI CTYRAG 1 cut(s) 1033
SphI GCATGC 1 cut(s) 28
Sse9I AATT 9 cut(s) 6, 692, 739, 898, 983, 1147, 1188, 1228, 1309
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 5 cut(s) 111, 246, 300, 1205, 1286
SspMI CTAG 4 cut(s) 644, 855, 1059, 1161
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 808
StyI CCWWGG 2 cut(s) 1058, 1165
TaaI ACNGT 2 cut(s) 716, 861
TaiI ACGT 1 cut(s) 477
TaqI TCGA 5 cut(s) 39, 69, 93, 846, 934
TasI AATT 9 cut(s) 6, 692, 739, 898, 983, 1147, 1188, 1228, 1309
TatI WGTACW 1 cut(s) 198
TauI GCSGC 3 cut(s) 114, 249, 302
TfiI GAWTC 6 cut(s) 75, 800, 823, 1063, 1076, 1127
Tru1I TTAA 2 cut(s) 155, 864
Tru9I TTAA 2 cut(s) 155, 864
TscAI CASTG 2 cut(s) 550, 692
TseFI GTSAC 2 cut(s) 32, 733
TseI GCWGC 4 cut(s) 108, 629, 632, 698
Tsp45I GTSAC 2 cut(s) 32, 733
TspDTI ATGAA 7 cut(s) 17, 150, 197, 229, 447, 1183, 1264
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 550, 692
Tth111I GACNNNGTC 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 54, 728
XapI RAATTY 8 cut(s) 692, 739, 898, 983, 1147, 1188, 1228, 1309
XceI RCATGY 2 cut(s) 28, 1123
XmaJI CCTAGG 1 cut(s) 1058
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 4 cut(s) 644, 855, 1059, 1161
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.