Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Reverse (-)

22386633 .. 22387304

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1228500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAATTAGAGGTTTCTAATTACTTGTGGGAAATGTACTATGGAGGATGGGCAGCACCTAATATATACTTCTTGGGGTTTGCTGGTGTAGTCAAGTTCGGAAACCTTCGAATTGGTGGACTCTCTGGAATTTATAAACAGCCCGATTTTCTTAAAGGACACTTTGACAGGCCTCCTTATAATGGTCATACTATTAGGTCAGTATATCATGTTCGTGAGTATGATTTCCACAAACTCATGCAAGTTGAGGAACCAGTCGATATTTTTCTTTCACATGATTGCCCTGTTGGCATCACTGATTGTGGGGACTGGAAGGAACTTGTTCGGGAAAAACCAGATTTTAAGCAGGAGGTAATTGCAAGAACGGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

125

Amino Acids

14.46

Weight (kDa)

6.19

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	135, 180
AcsI	RAATTY	1 cut(s)	129
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	321
AsuII	TTCGAA	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	252
BmsI	GCATC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	254, 314
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	254, 314
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	109
BspANI	GGCC	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	254, 314
BstBI	TTCGAA	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	3 cut(s)	209, 238, 275
CviJI	RGCY	2 cut(s)	142, 172
CviKI_1	RGCY	2 cut(s)	142, 172
CviQI	GTAC	1 cut(s)	37
Eco147I	AGGCCT	1 cut(s)	172
FaeI	CATG	3 cut(s)	212, 241, 278
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	208, 237, 274
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	212, 241, 278
HinfI	GANTC	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	126, 215, 326
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	116, 307
HpyCH4V	TGCA	2 cut(s)	241, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	212, 241, 278
LpnPI	CCDG	8 cut(s)	69, 111, 154, 267, 295, 297, 332, 348
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	300
MluCI	AATT	5 cut(s)	5, 19, 111, 129, 354
MlyI	GAGTC	1 cut(s)	114
MnlI	CCTC	5 cut(s)	4, 38, 183, 241, 343
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	2 cut(s)	153, 342
MslI	CAYNNNNRTG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	288
NlaIII	CATG	3 cut(s)	212, 241, 278
NlaIV	GGNNCC	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PsiI	TTATAA	2 cut(s)	135, 180
PspN4I	GGNNCC	1 cut(s)	252
PsrI	GAACNNNNNNTAC	2 cut(s)	195, 227
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	153, 342
SatI	GCNGC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	114
SetI	ASST	5 cut(s)	15, 61, 108, 200, 354
SfaNI	GCATC	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	5 cut(s)	5, 19, 111, 129, 354
SseBI	AGGCCT	1 cut(s)	172
StuI	AGGCCT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	109, 258
TasI	AATT	5 cut(s)	5, 19, 111, 129, 354
TatI	WGTACW	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	153, 342
Tru9I	TTAA	2 cut(s)	153, 342
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.