Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002005

Physical Location & Seq

Genomic Coordinates Forward (+)

3027296 .. 3030179

Gene Structure 2884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1043800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAAGATTGCAGTCGAAGGTTGCATGCACGGCGACCTCGACAACGTCTACCGAACCCTCCAACACTACGAAAAGCTTCACGACACCACCATCGACCTCCTCCTCTGCTGCGGCGACTTTCAGGCTGTGAGGAATGAGAAGGACTTGGATAGCTTAAATGTGCCTCACAAGTTCAGGAGCATGAACACATTCTGGAAGTATTATTCCGGGGAGGCAGTGGCTCCGTACCCGACCATATTCATCGGTGGGAATCACGAGGCTTCCAATTACTTGTGGGAACTGTATTATGGAGGATGGGCAGCACCTAATATTTACTTCTTGGGGTTTGCTGGTGTAGTCAAGTTCGGAAACCTTCGGATTGGTGGACTCTCTGGAATTTATAAACAGCCCAATTTTCTAAAAGGACACTTTGAGAGGCCTCCTTTTAATGATAGTACTATCAGGTCCGTGTATCATGTTCGTGAGTATGATTTCCACAAACTCATGCAAGTTGAGGAACCAATTGATATTTTTCTTTCGCATGATTGGCCTGTTGGTATCACGGATTGTGGGGACTGGAAGAAACTTGTTCAGCAAAAACCATATTTTAGGCAGGAGGTTCAAGAAAGAAAGCTTGGAAGTAAACCAGCTGCTCAATTGCTTGAAAAACTGAAACCACCTTATTGGTTTTCAGCTCATTTACACTGCAAATTTGCTGCTCGTGTTCAACATGGGGAAGATGGTCCAGTGACGAACTTTCTTGCTCTTGATAAGTGCCAACCTGGACGTAAATTTCTACAGGTTATTGAAATTGAATCAGAACCGGGCCCTTATGAGATTCAGTACGATGAAGAATGGCTAGAAATAACTCGGCGGTTTAACTCTATTTTCCCTCTCACTACCAGAAGTGCAAATCTTTGGAATGTACGTCTTGACAAACAAGAATGTCGTCAGTGGGTCAGGAGCAAGTTACAAGCAAGAGGGGCCAGACCCTTTGAATTCACTCAGACAGTTCCACCATACAATCCCTCTCAATCTGTCACTTATGGTTCCTTCCCTGGACACGTTCGGAGTCCTCAGACAGAATCTCTATTGCAGTTTCTGGAACTTCCTTACCTTCTTGATAACGTGTCACAATCATCCGAAGTACTCCCAAGTCCTCCTAGAGGTTCTGTTGAAGAGAACAGTGAAGACATTCCCATTGATGATGTGGATGAGTTGGAAGAAGATGCTGTGGATTGCGAAAACGAAAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

413

Amino Acids

47.57

Weight (kDa)

5.32

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	1 - 229	5.4e-14	Calcineurin-like phosphoesterase
DBR1	PF05011	243 - 364	3.5e-27	Lariat debranching enzyme, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31770 AT4G31770
fragaria_vesca	FvH4_2g41360 FvH4_6g29560
malus_domestica	MD08G1051300.v1.1 MD13G1228500.v1.1 MD15G1043800.v1.1
prunus_persica	Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1 Prupe.1G397300_v2.0.a1
pyrus_communis	pycom15g04070
rosa_chinensis	RchiOBHm_Chr1g0357361 RchiOBHm_Chr2g0135121 RchiOBHm_Chr6g0299131
rosa_laevigata	RLG00000011460 RLG00000019443 RLG00000028022
rosa_multiflora	Rmu_co8086444.1_g000001 Rmu_sc0001385.1_g000017 Rmu_sc0001434.1_g000018 Rmu_sc0003543.1_g000005
rosa_roxburghii	Rroxscaffold_2G00109470 Rroxscaffold_7G00168980
rosa_rugosa	Rorug01G0256500 Rorug02G0323300 Rorug06G0285600
rosa_samantha	Rh1AG270400 Rh1CG254100 Rh1CG254200 Rh2AG371700 Rh2BG379800 Rh2CG358900 Rh2DG396400 Rh6AG396600 Rh6BG404800 Rh6BG405000 Rh6CG411100 Rh6DG397800
rosa_wichuraiana	Rw0G013580 Rw1G023910 Rw1G023940 Rw6G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	2 cut(s)	111, 853
AcsI	RAATTY	5 cut(s)	375, 689, 770, 977, 1231
AfaI	GTAC	5 cut(s)	227, 436, 824, 906, 1128
AfiI	CCNNNNNNNGG	1 cut(s)	1145
AflIII	ACRYGT	2 cut(s)	1042, 1107
AgsI	TTSAA	7 cut(s)	602, 644, 707, 788, 794, 977, 1157
AjnI	CCWGG	2 cut(s)	760, 1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
AluBI	AGCT	5 cut(s)	76, 153, 613, 629, 674
AluI	AGCT	5 cut(s)	76, 153, 613, 629, 674
AlwNI	CAGNNNCTG	1 cut(s)	1081
AoxI	GGCC	4 cut(s)	416, 527, 805, 963
ApaI	GGGCCC	1 cut(s)	809
ApeKI	GCWGC	4 cut(s)	108, 299, 629, 695
ApoI	RAATTY	5 cut(s)	375, 689, 770, 977, 1231
Asp700I	GAANNNNTTC	3 cut(s)	75, 188, 1173
AspS9I	GGNCC	5 cut(s)	444, 722, 805, 806, 963
AsuC2I	CCSGG	2 cut(s)	208, 804
AvaII	GGWCC	2 cut(s)	444, 722
BaeGI	GKGCMC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	809
BauI	CACGAG	2 cut(s)	254, 699
BbsI	GAAGAC	1 cut(s)	1176
BbvI	GCAGC	4 cut(s)	95, 311, 616, 682
BccI	CCATC	3 cut(s)	98, 288, 713
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	762, 1038
BcnI	CCSGG	2 cut(s)	208, 804
BfaI	CTAG	2 cut(s)	839, 1143
BfmI	CTRYAG	1 cut(s)	776
BisI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
BlsI	GCNGC	5 cut(s)	110, 113, 301, 631, 697
BmcAI	AGTACT	2 cut(s)	436, 1128
Bme1390I	CCNGG	4 cut(s)	208, 762, 804, 1038
Bme18I	GGWCC	2 cut(s)	444, 722
BmgT120I	GGNCC	5 cut(s)	444, 722, 805, 806, 963
BmiI	GGNNCC	5 cut(s)	222, 498, 807, 964, 1030
BmrFI	CCNGG	4 cut(s)	208, 762, 804, 1038
BmsI	GCATC	1 cut(s)	1198
BpiI	GAAGAC	1 cut(s)	1176
BpuMI	CCSGG	2 cut(s)	208, 804
BsaJI	CCNNGG	2 cut(s)	207, 1036
Bsc4I	CCNNNNNNNGG	1 cut(s)	1145
Bse1I	ACTGG	2 cut(s)	560, 725
BseBI	CCWGG	2 cut(s)	762, 1038
BseDI	CCNNGG	2 cut(s)	207, 1036
BseGI	GGATG	3 cut(s)	299, 1118, 1198
BseLI	CCNNNNNNNGG	1 cut(s)	1145
BseMII	CTCAG	2 cut(s)	998, 1070
BseNI	ACTGG	2 cut(s)	560, 725
BseRI	GAGGAG	2 cut(s)	89, 92
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	4 cut(s)	95, 311, 616, 682
BshFI	GGCC	4 cut(s)	418, 529, 807, 965
BsiSI	CCGG	2 cut(s)	207, 803
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	1145
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	4 cut(s)	418, 529, 807, 965
Bsp120I	GGGCCC	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	809
BspACI	CCGC	2 cut(s)	111, 853
BspANI	GGCC	4 cut(s)	418, 529, 807, 965
BspCNI	CTCAG	2 cut(s)	997, 1069
BspHI	TCATGA	1 cut(s)	1235
BspLI	GGNNCC	5 cut(s)	222, 498, 807, 964, 1030
BsrI	ACTGG	2 cut(s)	560, 725
BssECI	CCNNGG	2 cut(s)	207, 1036
BssSI	CACGAG	2 cut(s)	254, 699
Bst2BI	CACGAG	2 cut(s)	254, 699
Bst2UI	CCWGG	2 cut(s)	762, 1038
Bst4CI	ACNGT	3 cut(s)	282, 991, 1166
Bst6I	CTCTTC	1 cut(s)	1152
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	984, 1056
BstENI	CCTNNNNNAGG	1 cut(s)	1143
BstF5I	GGATG	3 cut(s)	299, 1118, 1198
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 526, 962
BstNI	CCWGG	2 cut(s)	762, 1038
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	4 cut(s)	206, 760, 802, 1036
BstSFI	CTRYAG	1 cut(s)	776
BstSLI	GKGCMC	1 cut(s)	809
BstV1I	GCAGC	4 cut(s)	95, 311, 616, 682
BstV2I	GAAGAC	1 cut(s)	1176
BstXI	CCANNNNNNTGG	1 cut(s)	663
BsuRI	GGCC	4 cut(s)	418, 529, 807, 965
BtsCI	GGATG	3 cut(s)	299, 1118, 1198
BtsI	GCAGTG	2 cut(s)	222, 682
BtsIMutI	CAGTG	5 cut(s)	222, 682, 732, 938, 1171
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	1081
CciI	TCATGA	1 cut(s)	1235
Cfr13I	GGNCC	5 cut(s)	444, 722, 805, 806, 963
Csp6I	GTAC	5 cut(s)	226, 435, 823, 905, 1127
CviAII	CATG	7 cut(s)	25, 181, 455, 484, 521, 710, 1236
CviQI	GTAC	5 cut(s)	226, 435, 823, 905, 1127
DdeI	CTNAG	2 cut(s)	984, 1056
Eam1104I	CTCTTC	1 cut(s)	1152
EarI	CTCTTC	1 cut(s)	1152
Eco147I	AGGCCT	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	809
Eco47I	GGWCC	2 cut(s)	444, 722
EcoNI	CCTNNNNNAGG	1 cut(s)	1143
EcoO109I	RGGNCCY	1 cut(s)	806
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	2 cut(s)	760, 1036
EcoT38I	GRGCYC	1 cut(s)	809
FaeI	CATG	7 cut(s)	28, 184, 458, 487, 524, 713, 1239
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	7 cut(s)	24, 180, 454, 483, 520, 709, 1235
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
FokI	GGATG	3 cut(s)	306, 1105, 1205
FriOI	GRGCYC	1 cut(s)	809
Fsp4HI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
FspBI	CTAG	2 cut(s)	839, 1143
GluI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
HaeIII	GGCC	4 cut(s)	418, 529, 807, 965
HapII	CCGG	2 cut(s)	207, 803
Hin1II	CATG	7 cut(s)	28, 184, 458, 487, 524, 713, 1239
HindIII	AAGCTT	2 cut(s)	74, 611
HinfI	GANTC	6 cut(s)	250, 366, 794, 817, 1051, 1064
HpaII	CCGG	2 cut(s)	207, 803
Hpy166II	GTNNAC	3 cut(s)	49, 365, 623
Hpy188I	TCNGA	7 cut(s)	347, 357, 799, 987, 1050, 1059, 1123
Hpy8I	GTNNAC	3 cut(s)	49, 365, 623
HpyAV	CCTTC	5 cut(s)	11, 133, 362, 1042, 1106
HpyCH4III	ACNGT	3 cut(s)	282, 991, 1166
HpyCH4IV	ACGT	5 cut(s)	45, 766, 907, 1044, 1107
HpyCH4V	TGCA	7 cut(s)	11, 24, 28, 487, 687, 890, 1075
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 526, 962
HpyF3I	CTNAG	2 cut(s)	984, 1056
HpySE526I	ACGT	5 cut(s)	45, 766, 907, 1044, 1107
Hsp92II	CATG	7 cut(s)	28, 184, 458, 487, 524, 713, 1239
LmnI	GCTCC	3 cut(s)	177, 226, 942
Lsp1109I	GCAGC	4 cut(s)	95, 311, 616, 682
LweI	GCATC	1 cut(s)	1198
MaeI	CTAG	2 cut(s)	839, 1143
MaeII	ACGT	5 cut(s)	45, 766, 907, 1044, 1107
MaeIII	GTNAC	4 cut(s)	727, 948, 1018, 1110
MboII	GAAGA	8 cut(s)	16, 571, 728, 842, 1169, 1181, 1214, 1217
MfeI	CAATTG	2 cut(s)	501, 635
MhlI	GDGCHC	1 cut(s)	809
MlyI	GAGTC	2 cut(s)	360, 1060
MmeI	TCCRAC	2 cut(s)	85, 1179
MroXI	GAANNNNTTC	3 cut(s)	75, 188, 1173
MseI	TTAA	3 cut(s)	155, 426, 858
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	207, 803
MspR9I	CCNGG	4 cut(s)	208, 762, 804, 1038
MunI	CAATTG	2 cut(s)	501, 635
MvaI	CCWGG	2 cut(s)	762, 1038
MwoI	GCNNNNNNNGC	3 cut(s)	30, 526, 962
NciI	CCSGG	2 cut(s)	208, 804
NlaIII	CATG	7 cut(s)	28, 184, 458, 487, 524, 713, 1239
NlaIV	GGNNCC	5 cut(s)	222, 498, 807, 964, 1030
NmeAIII	GCCGAG	1 cut(s)	829
NmuCI	GTSAC	3 cut(s)	727, 1018, 1110
NspI	RCATGY	1 cut(s)	28
PaeI	GCATGC	1 cut(s)	28
PagI	TCATGA	1 cut(s)	1235
PceI	AGGCCT	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	3 cut(s)	75, 188, 1173
PfeI	GAWTC	4 cut(s)	250, 794, 817, 1064
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	110, 113, 301, 631, 697
PleI	GAGTC	2 cut(s)	360, 1059
PpsI	GAGTC	2 cut(s)	360, 1059
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	760, 1036
PspGI	CCWGG	2 cut(s)	760, 1036
PspN4I	GGNNCC	5 cut(s)	222, 498, 807, 964, 1030
PspOMI	GGGCCC	1 cut(s)	805
PspPI	GGNCC	5 cut(s)	444, 722, 805, 806, 963
PstNI	CAGNNNCTG	1 cut(s)	1081
PsyI	GACNNNGTC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	5 cut(s)	227, 436, 824, 906, 1128
RsaNI	GTAC	5 cut(s)	226, 435, 823, 905, 1127
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	155, 426, 858
SatI	GCNGC	5 cut(s)	109, 112, 300, 630, 696
Sau96I	GGNCC	5 cut(s)	444, 722, 805, 806, 963
ScaI	AGTACT	2 cut(s)	436, 1128
SchI	GAGTC	2 cut(s)	360, 1060
ScrFI	CCNGG	4 cut(s)	208, 762, 804, 1038
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	1 cut(s)	1198
SfcI	CTRYAG	1 cut(s)	776
SinI	GGWCC	2 cut(s)	444, 722
SmiMI	CAYNNNNRTG	1 cut(s)	459
SphI	GCATGC	1 cut(s)	28
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	111, 853
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	2 cut(s)	839, 1143
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	4 cut(s)	206, 760, 802, 1036
TaaI	ACNGT	3 cut(s)	282, 991, 1166
TaiI	ACGT	5 cut(s)	48, 769, 910, 1047, 1110
TaqI	TCGA	3 cut(s)	15, 39, 93
TatI	WGTACW	2 cut(s)	434, 1126
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	4 cut(s)	250, 794, 817, 1064
Tru1I	TTAA	3 cut(s)	155, 426, 858
Tru9I	TTAA	3 cut(s)	155, 426, 858
TscAI	CASTG	5 cut(s)	222, 689, 732, 938, 1171
TseFI	GTSAC	3 cut(s)	727, 1018, 1110
TseI	GCWGC	4 cut(s)	108, 299, 629, 695
Tsp45I	GTSAC	3 cut(s)	727, 1018, 1110
TspDTI	ATGAA	5 cut(s)	17, 197, 229, 843, 1224
TspGWI	ACGGA	3 cut(s)	213, 436, 557
TspRI	CASTG	5 cut(s)	222, 689, 732, 938, 1171
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	444, 722
XagI	CCTNNNNNAGG	1 cut(s)	1143
XapI	RAATTY	5 cut(s)	375, 689, 770, 977, 1231
XceI	RCATGY	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1186
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	3 cut(s)	75, 188, 1173
XspI	CTAG	2 cut(s)	839, 1143
ZrmI	AGTACT	2 cut(s)	436, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.